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Tetsu Narumi

Research Profile

Occupations

Thermodynamics

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Protein Folding

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Siegfried Höfinger; Tetsu Narumi; Sergiu C Pop; Kenji Yasuoka; Angela Acocella; Titus Beu; Francesco Zerbetto
GPU-accelerated computation of electron transfer.
Siegfried Höfinger; Tetsu Narumi; Eiji Yamamoto; Kenji Yasuoka; Francesco Zerbetto; Yoshinori Hirano; Masato Yasui
Structural features of aquaporin 4 supporting the formation of arrays and junctions in biomembranes.
Kazuaki Z Takahashi; Tetsu Narumi; Kenji Yasuoka
A combination of the tree-code and IPS method to simulate large scale systems by molecular dynamics.

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2012: Siegfried Höfinger; Tetsu Narumi; Sergiu C Pop; Kenji Yasuoka; Angela Acocella; Titus Beu; Francesco Zerbetto
GPU-accelerated computation of electron transfer.
Journal of computational chemistry 2012;33(29):2351-6.
2012: Siegfried Höfinger; Tetsu Narumi; Eiji Yamamoto; Kenji Yasuoka; Francesco Zerbetto; Yoshinori Hirano; Masato Yasui
Structural features of aquaporin 4 supporting the formation of arrays and junctions in biomembranes.
Biochimica et biophysica acta 2012;1818(9):2234-43.
2011: Kazuaki Z Takahashi; Tetsu Narumi; Kenji Yasuoka
A combination of the tree-code and IPS method to simulate large scale systems by molecular dynamics.
The Journal of chemical physics 2011;135(17):174108.
2011: Kazuaki Z Takahashi; Tetsu Narumi; Kenji Yasuoka
Cutoff radius effect of the isotropic periodic sum and Wolf method in liquid-vapor interfaces of water.
The Journal of chemical physics 2011;134(17):174112.
2011: Ryuji Sakamaki; Amadeu K Sum; Tetsu Narumi; Ryo Ohmura; Kenji Yasuoka
Thermodynamic properties of methane/water interface predicted by molecular dynamics simulations.
The Journal of chemical physics 2011;134(14):144702.
2011: Ryuji Sakamaki; Amadeu K Sum; Tetsu Narumi; Kenji Yasuoka
Molecular dynamics simulations of vapor/liquid coexistence using the nonpolarizable water models.
The Journal of chemical physics 2011;134(12):124708.
2010: Kazuaki Takahashi; Tetsu Narumi; Kenji Yasuoka
Cutoff radius effect of the isotropic periodic sum method in homogeneous system. II. Water.
The Journal of chemical physics 2010;133(1):014109.
2009: Tetsu Narumi; Kenji Yasuoka; Makoto Taiji; Siegfried Höfinger
Current performance gains from utilizing the GPU or the ASIC MDGRAPE-3 within an enhanced Poisson Boltzmann approach.
Journal of computational chemistry 2009;30(14):2351-7.
2009: Noriaki Okimoto; Noriyuki Futatsugi; Hideyoshi Fuji; Atsushi Suenaga; Gentaro Morimoto; Ryoko Yanai; Yousuke Ohno; Tetsu Narumi; Makoto Taiji
High-performance drug discovery: computational screening by combining docking and molecular dynamics simulations.
PLoS computational biology 2009;5(10):e1000528.
2007: Kazuaki Takahashi; Kenji Yasuoka; Tetsu Narumi
Cutoff radius effect of isotropic periodic sum method for transport coefficients of Lennard-Jones liquid.
The Journal of chemical physics 2007;127(11):114511.
2007: Atsushi Suenaga; Tetsu Narumi; Noriyuki Futatsugi; Ryoko Yanai; Yousuke Ohno; Noriaki Okimoto; Makoto Taiji
Folding dynamics of 10-residue beta-hairpin peptide chignolin.
Chemistry, an Asian journal 2007;2(5):591-8.
2006: Atsushi Suenaga; Noriaki Okimoto; Noriyuki Futatsugi; Yoshinori Hirano; Tetsu Narumi; Yousuke Ohno; Ryoko Yanai; Takatsugu Hirokawa; Toshikazu Ebisuzaki; Akihiko Konagaya; Makoto Taiji
Structure and dynamics of RNA polymerase II elongation complex.
Biochemical and biophysical research communications 2006;343(1):90-8.
2005: Atsushi Suenaga; Naoki Takada; Mariko Hatakeyama; Mio Ichikawa; Xiaomei Yu; Kentaro Tomii; Noriaki Okimoto; Noriyuki Futatsugi; Tetsu Narumi; Mikako Shirouzu; Shigeyuki Yokoyama; Akihiko Konagaya; Makoto Taiji
Novel mechanism of interaction of p85 subunit of phosphatidylinositol 3-kinase and ErbB3 receptor-derived phosphotyrosyl peptides.
The Journal of biological chemistry 2005;280(2):1321-6.
2004: Takahiro Koishi; S Yoo; Kenji Yasuoka; X C Zeng; Tetsu Narumi; R Susukita; A Kawai; H Furusawa; A Suenaga; N Okimoto; Noriyuki Futatsugi; Toshikazu Ebisuzaki
Nanoscale hydrophobic interaction and nanobubble nucleation.
Physical review letters 2004;93(18):185701.
2004: Atsushi Suenaga; Anatoly Kiyatkin; Mariko Hatakeyama; Noriyuki Futatsugi; Noriaki Okimoto; Yoshinori Hirano; Tetsu Narumi; Atsushi Kawai; Ryutaro Susukita; Takahiro Koishi; Hideaki Furusawa; Kenji Yasuoka; Naoki Takada; Yousuke Ohno; Makoto Taiji; Toshikazu Ebisuzaki; Jan B Hoek; Akihiko Konagaya; Boris N Kholodenko
Tyr-317 phosphorylation increases Shc structural rigidity and reduces coupling of domain motions remote from the phosphorylation site as revealed by molecular dynamics simulations.
The Journal of biological chemistry 2004;279(6):4657-62.
2003: Atsushi Suenaga; Mariko Hatakeyama; Mio Ichikawa; Xiaomei Yu; Noriyuki Futatsugi; Tetsu Narumi; Kazuhiko Fukui; Takaho Terada; Makoto Taiji; Mikako Shirouzu; Shigeyuki Yokoyama; Akihiko Konagaya
Molecular dynamics, free energy, and SPR analyses of the interactions between the SH2 domain of Grb2 and ErbB phosphotyrosyl peptides.
Biochemistry 2003;42(18):5195-200.