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William Nelson

Research Profile

Genes & Molecular Sequences

Concepts & Ideas

Procedures

Sequence Analysis, DNA

Chemicals & Drugs

Occupations

Genomics

Living Beings

Anatomy

Bacterial Chromosomes

Phenomena

Physiology

Horizontal Gene Transfer

Co-author Network

Publications

TOP 3
William C Nelson; Devaki Bhaya; John F Heidelberg
Novel miniature transposable elements in thermophilic Synechococcus strains and their impact on an environmental population.
William C Nelson; Lori Wollerman; Devaki Bhaya; John F Heidelberg
Analysis of insertion sequences in thermophilic cyanobacteria: exploring the mechanisms of establishing, maintaining, and withstanding high insertion sequence abundance.
Jennifer F Biddle; William J Brazelton; Katrina J Edwards; John F Heidelberg; Craig L Moyer; Jason B Sylvan; Benjamin J Tully; William C Nelson
Prospects for the study of evolution in the deep biosphere.

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All Publications

2012: William C Nelson; Devaki Bhaya; John F Heidelberg
Novel miniature transposable elements in thermophilic Synechococcus strains and their impact on an environmental population.
Journal of bacteriology 2012;194(14):3636-42.
2011: William C Nelson; Lori Wollerman; Devaki Bhaya; John F Heidelberg
Analysis of insertion sequences in thermophilic cyanobacteria: exploring the mechanisms of establishing, maintaining, and withstanding high insertion sequence abundance.
Applied and environmental microbiology 2011;77(15):5458-66.
2011: Jennifer F Biddle; William J Brazelton; Katrina J Edwards; John F Heidelberg; Craig L Moyer; Jason B Sylvan; Benjamin J Tully; William C Nelson
Prospects for the study of evolution in the deep biosphere.
Frontiers in microbiology 2011;2():285.
2011: Esther Singer; Eric A Webb; Roman A Barco; Clara S Chan; Luis R Comolli; David Emerson; Steve Ferriera; John F Heidelberg; Justin Johnson; J Gijs Kuenen; William C Nelson; Katrina J Edwards
Mariprofundus ferrooxydans PV-1 the first genome of a marine Fe(II) oxidizing Zetaproteobacterium.
PloS one 2011;6(9):e25386.
2008: Meng Qi; Karen E Nelson; Sean C Daugherty; William C Nelson; Ioana R Hance; M Morrison; Cecil W Forsberg
Genomic differences between Fibrobacter succinogenes S85 and Fibrobacter intestinalis DR7, identified by suppression subtractive hybridization.
Applied and environmental microbiology 2008;74(4):987-93.
2007: Donald A Bryant; Amaya M Garcia Costas; Julia A Maresca; Aline Gomez Maqueo Chew; Christian G Klatt; Mary M Bateson; Luke J Tallon; Jessica Hostetler; William C Nelson; John F Heidelberg; David M Ward
Candidatus Chloracidobacterium thermophilum: an aerobic phototrophic Acidobacterium.
Science (New York, N.Y.) 2007;317(5837):523-6.
2007: Garry S A Myers; Dane Parker; Keith Al-Hasani; Ruth M Kennan; Torsten Seemann; Qinghu Ren; Jonathan H Badger; Jeremy D Selengut; Robert T Deboy; Hervé Tettelin; John D Boyce; Victoria P McCarl; Xiaoyan Han; William C Nelson; Ramana Madupu; Yasmin Mohamoud; Tara Holley; Nadia Fedorova; Hoda Khouri; Steven P Bottomley; Richard J Whittington; Ben Adler; J Glenn Songer; Julian I Rood; Ian Paulsen
Genome sequence and identification of candidate vaccine antigens from the animal pathogen Dichelobacter nodosus.
Nature biotechnology 2007;25(5):569-75.
2007: Jeremy D Selengut; Daniel H Haft; Tanja M Davidsen; Anurhada Ganapathy; Michelle G Giglio; William C Nelson; Alexander R Richter; Owen R White
TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes.
Nucleic acids research 2007;35(Database issue):D260-4.
2006: Brian Palenik; Qinghu Ren; Chris L Dupont; Garry S A Myers; John F Heidelberg; Jonathan H Badger; Ramana Madupu; William C Nelson; Lauren M Brinkac; Robert J Dodson; A Scott Durkin; Sean C Daugherty; Steven A Sullivan; Hoda Khouri; Yasmin Mohamoud; Rebecca Halpin; Ian Paulsen
Genome sequence of Synechococcus CC9311: Insights into adaptation to a coastal environment.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(36):13555-9.
2006: Stefan Pukatzki; Amy T Ma; Derek Sturtevant; Bryan Krastins; David A Sarracino; William C Nelson; John F Heidelberg; John J Mekalanos
Identification of a conserved bacterial protein secretion system in Vibrio cholerae using the Dictyostelium host model system.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(5):1528-33.
2005: Martin Wu; Qinghu Ren; A Scott Durkin; Sean C Daugherty; Lauren M Brinkac; Robert J Dodson; Ramana Madupu; Steven A Sullivan; James F Kolonay; Daniel H Haft; William C Nelson; Luke J Tallon; Kristine M Jones; Luke E Ulrich; Juan M Gonzalez; Igor B Zhulin; Frank Thomson Robb; Jonathan Eisen
Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901.
PLoS genetics 2005;1(5):e65.
2005: Barbara A Methé; Karen E Nelson; Jody W Deming; Bahram Momen; Eugene Melamud; Xijun Zhang; John Moult; Ramana Madupu; William C Nelson; Robert J Dodson; Lauren M Brinkac; Sean C Daugherty; A Scott Durkin; Robert T Deboy; James F Kolonay; Steven A Sullivan; Liwei Zhou; Tanja M Davidsen; Martin Wu; Adrienne L Huston; Matthew Lewis; Bruce Weaver; Janice Weidman; Hoda Khouri; Teresa Utterback; Tamara Feldblyum; Claire M Fraser-Liggett
The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(31):10913-8.
2005: Ian Paulsen; Caroline M Press; Jacques Ravel; Donald Y Kobayashi; Garry S A Myers; Dmitri V Mavrodi; Robert T Deboy; Rekha Seshadri; Qinghu Ren; Ramana Madupu; Robert J Dodson; A Scott Durkin; Lauren M Brinkac; Sean C Daugherty; Steven A Sullivan; Mary J Rosovitz; Michelle G Giglio; Liwei Zhou; Davd J Schneider; Samuel Cartinhour; William C Nelson; Janice Weidman; Kisha Watkins; Kevin Tran; Hoda Khouri; Elizabeth A Pierson; Leland S Pierson; Linda S Thomashow; Joyce E Loper
Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5.
Nature biotechnology 2005;23(7):873-8.
2005: Meng Qi; Karen E Nelson; Sean C Daugherty; William C Nelson; Ioana R Hance; Mark Morrison; Cecil W Forsberg
Novel molecular features of the fibrolytic intestinal bacterium Fibrobacter intestinalis not shared with Fibrobacter succinogenes as determined by suppressive subtractive hybridization.
Journal of bacteriology 2005;187(11):3739-51.
2005: Rekha Seshadri; Lorenz Adrian; Derrick E Fouts; Jonathan Eisen; Adam M Phillippy; Barbara A Methe; Naomi L Ward; William C Nelson; Robert T Deboy; Hoda Khouri; James F Kolonay; Robert J Dodson; Sean C Daugherty; Lauren M Brinkac; Steven A Sullivan; Ramana Madupu; Karen E Nelson; Katherine H Kang; Marjorie Impraim; Kevin Tran; Jeffrey M Robinson; Heather A Forberger; Claire M Fraser-Liggett; Stephen H Zinder; John F Heidelberg
Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes.
Science (New York, N.Y.) 2005;307(5706):105-8.
2005: Steven L Salzberg; Julie C Hotopp; Arthur L Delcher; Mihai Pop; Douglas R Smith; Michael B Eisen; William C Nelson
Correction: Serendipitous discovery of Wolbachia genomes in multiple Drosophila species.
Genome biology 2005;6(7):402.
2005: Steven L Salzberg; Julie C Hotopp; Arthur L Delcher; Mihai Pop; Douglas R Smith; Michael B Eisen; William C Nelson
Serendipitous discovery of Wolbachia genomes in multiple Drosophila species.
Genome biology 2005;6(3):R23.
2004: Martin Wu; Ling V Sun; Jessica Vamathevan; Markus Riegler; Robert T Deboy; Jeremy C Brownlie; Elizabeth A McGraw; William Martin; Christian Esser; Nahal Ahmadinejad; Christian Wiegand; Ramana Madupu; Maureen J Beanan; Lauren M Brinkac; Sean C Daugherty; A Scott Durkin; James F Kolonay; William C Nelson; Yasmin Mohamoud; Perris Lee; Kristi Berry; M Brook Young; Teresa Utterback; Janice Weidman; William C Nierman; Ian Paulsen; Karen E Nelson; Hervé Tettelin; Scott L O'Neill; Jonathan Eisen
Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements.
PLoS biology 2004;2(3):E69.
2004: David Rasko; Jacques Ravel; Ole Andreas Økstad; Erlendur Helgason; Regina Z Cer; Lingxia Jiang; Kelly A Shores; Derrick E Fouts; Nicolas J Tourasse; Samuel V Angiuoli; James F Kolonay; William C Nelson; Anne-Brit Kolstø; Claire M Fraser-Liggett; Timothy D Read
The genome sequence of Bacillus cereus ATCC 10987 reveals metabolic adaptations and a large plasmid related to Bacillus anthracis pXO1.
Nucleic acids research 2004;32(3):977-88.
2003: Karen E Nelson; Robert D Fleischmann; Robert T Deboy; Ian Paulsen; Derrick E Fouts; Jonathan Eisen; Sean C Daugherty; Robert J Dodson; A Scott Durkin; Michelle G Giglio; Daniel H Haft; James F Kolonay; William C Nelson; Tanya Mason; Luke J Tallon; Jessica Gray; David Granger; Hervé Tettelin; Hong Dong; Jamie L Galvin; Margaret J Duncan; Floyd E Dewhirst; Claire M Fraser-Liggett
Complete genome sequence of the oral pathogenic Bacterium porphyromonas gingivalis strain W83.
Journal of bacteriology 2003;185(18):5591-601.
2003: Eric S Miller; John F Heidelberg; Jonathan Eisen; William C Nelson; A Scott Durkin; Ann Ciecko; Tamara Feldblyum; Owen R White; Ian Paulsen; William C Nierman; Jong Lee; Bridget Szczypinski; Claire M Fraser-Liggett
Complete genome sequence of the broad-host-range vibriophage KVP40: comparative genomics of a T4-related bacteriophage.
Journal of bacteriology 2003;185(17):5220-33.
2003: Rekha Seshadri; Ian Paulsen; Jonathan Eisen; Timothy D Read; Karen E Nelson; William C Nelson; Naomi L Ward; Hervé Tettelin; Tanja M Davidsen; Maureen J Beanan; Robert T Deboy; Sean C Daugherty; Lauren M Brinkac; Ramana Madupu; Robert J Dodson; Hoda Khouri; Kathy H Lee; Heather A Carty; David Scanlan; Robert A Heinzen; Herbert A Thompson; James E Samuel; Claire M Fraser-Liggett; John F Heidelberg
Complete genome sequence of the Q-fever pathogen Coxiella burnetii.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(9):5455-60.
2003: Timothy D Read; Garry S A Myers; Robert brunham; William C Nelson; Ian Paulsen; John F Heidelberg; Erik Holtzapple; Hoda Khouri; N B Federova; H A Carty; Lowell Umayam; Daniel H Haft; J Peterson; Maureen J Beanan; Owen R White; Steven L Salzberg; Ruching Hsia; Grant McClarty; Roger Rank; Patrik M Bavoil; Claire M Fraser-Liggett
Genome sequence of Chlamydophila caviae (Chlamydia psittaci GPIC): examining the role of niche-specific genes in the evolution of the Chlamydiaceae.
Nucleic acids research 2003;31(8):2134-47.
2002: Robert D Fleischmann; David Alland; Jonathan Eisen; L Carpenter; Owen R White; J Peterson; Robert T Deboy; Robert J Dodson; Michelle G Giglio; Daniel H Haft; EK Hickey; James F Kolonay; William C Nelson; Lowell Umayam; Maria D Ermolaeva; Steven L Salzberg; Arthur L Delcher; Teresa Utterback; Janice Weidman; Hoda Khouri; J Gill; A Mikula; William R Bishai; W R Jacobs Jr; J Craig Venter; Claire M Fraser-Liggett
Whole-genome comparison of Mycobacterium tuberculosis clinical and laboratory strains.
Journal of bacteriology 2002;184(19):5479-90.
2002: Oded Béjà; Marcelino Suzuki; John F Heidelberg; William C Nelson; Christina M Preston; Tohru Hamada; Jonathan Eisen; Claire M Fraser-Liggett; Edward F DeLong
Unsuspected diversity among marine aerobic anoxygenic phototrophs.
Nature 2002;415(6872):630-3.
1999: Karen E Nelson; RA Clayton; Steven R Gill; Michelle G Giglio; Robert J Dodson; Daniel H Haft; EK Hickey; J D Peterson; William C Nelson; KA Ketchum; L McDonald; Teresa Utterback; JA Malek; K D Linher; M M Garrett; A M Stewart; M D Cotton; M S Pratt; C A Phillips; D Richardson; John F Heidelberg; Granger Sutton; Robert D Fleischmann; Jonathan Eisen; Owen R White; Steven L Salzberg; Hamilton O Smith; J Craig Venter; Claire M Fraser-Liggett
Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima.
Nature 1999;399(6734):323-9.