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Dan Nettleton

This is a preview profile on BiomedExperts - the first literature-based scientific social network. It brings the right researchers together and allows them to collaborate online. Collexis and Dell provide the BiomedExperts network of +1.5 Million pre-calculated profiles free of charge to researchers worldwide.

Research Profile (preview)

Concepts & Ideas

Devices

Oligonucleotide Array Sequence Analysis

Physiology

Genes & Molecular Sequences

Living Beings

Chemicals & Drugs

Procedures

Reverse Transcriptase Polymerase Chain Reaction

Disorders

Plant Diseases

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Network (preview)

Co-Publications
Name
10
Recknor, Justin
8
Schnable, Patrick
8
Tuggle, Christopher
6
Baum, Thomas
6
Borsuk, Lisa
5
Dekkers, J C M
4
Bearson, Shawn
4
Lunney, Joan
4
Kuhar, Daniel
4
Uthe, Jolita
4
Zhao, Shu-Hong
3
Wendel, Jonathan
3
Zhang, Xiaolan
3
Wise, Roger
3
Udall, Joshua

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Publications

TOP 3
Schwab C R; Baas T J; Stalder K J; Nettleton D
Results from six generations of selection for intramuscular fat in Duroc swine using real-time ultrasound. I. Direct and correlated phenotypic responses to selection.
Lkhagvadorj Sender; Qu Long; Cai Weiguo; Couture Oliver P; Barb C Richard; Hausman Gary J; Nettleton Dan; Anderson Lloyd L; Dekkers Jack C M; Tuggle Christopher K
Microarray gene expression profiles of fasting induced changes in liver and adipose tissues of pigs expressing the melanocortin-4 receptor D298N variant.
Brooks Lionel; Strable Josh; Zhang Xiaolan; Ohtsu Kazuhiro; Zhou Ruilian; Sarkar Ananda; Hargreaves Sarah; Elshire Robert J; Eudy Douglas; Pawlowska Teresa; Ware Doreen; Janick-Buckner Diane; Buckner Brent; Timmermans Marja C P; Schnable Patrick S; Nettleton Dan; Scanlon Michael J
Microdissection of shoot meristem functional domains.

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All Publications

2009: Schwab C R; Baas T J; Stalder K J; Nettleton D
Results from six generations of selection for intramuscular fat in Duroc swine using real-time ultrasound. I. Direct and correlated phenotypic responses to selection.
Journal of animal science 2009;87(9):2774-80.
2009: Lkhagvadorj Sender; Qu Long; Cai Weiguo; Couture Oliver P; Barb C Richard; Hausman Gary J; Nettleton Dan; Anderson Lloyd L; Dekkers Jack C M; Tuggle Christopher K
Microarray gene expression profiles of fasting induced changes in liver and adipose tissues of pigs expressing the melanocortin-4 receptor D298N variant.
Physiological genomics 2009;38(1):98-111.
2009: Brooks Lionel; Strable Josh; Zhang Xiaolan; Ohtsu Kazuhiro; Zhou Ruilian; Sarkar Ananda; Hargreaves Sarah; Elshire Robert J; Eudy Douglas; Pawlowska Teresa; Ware Doreen; Janick-Buckner Diane; Buckner Brent; Timmermans Marja C P; Schnable Patrick S; Nettleton Dan; Scanlon Michael J
Microdissection of shoot meristem functional domains.
PLoS genetics 2009;5(5):e1000476.
2009: Li Ling; Foster Carol M; Gan Qinglei; Nettleton Dan; James Martha G; Myers Alan M; Wurtele Eve Syrkin
Identification of the novel protein QQS as a component of the starch metabolic network in Arabidopsis leaves.
The Plant journal : for cell and molecular biology 2009;58(3):485-98.
2009: Liu Zhiping; Henderson Abigail L; Nettleton Dan; Wilson-Welder Jennifer H; Hostetter Jesse M; Ramer-Tait Amanda; Jergens Albert E; Wannemuehler Michael J
Mucosal gene expression profiles following the colonization of immunocompetent defined-flora C3H mice with Helicobacter bilis: a prelude to typhlocolitis.
Microbes and infection / Institut Pasteur 2009;11(3):374-83.
2009: Uthe J J; Wang Y; Qu L; Nettleton D; Tuggle C K; Bearson S M D
Correlating blood immune parameters and a CCT7 genetic variant with the shedding of Salmonella enterica serovar Typhimurium in swine.
Veterinary microbiology 2009;135(3-4):384-8.
2009: Li Xuehui; Wei Yanling; Nettleton Dan; Brummer E Charles
Comparative gene expression profiles between heterotic and non-heterotic hybrids of tetraploid Medicago sativa.
BMC plant biology 2009;9():107.
2009: Elling Axel A; Mitreva Makedonka; Gai Xiaowu; Martin John; Recknor Justin; Davis Eric L; Hussey Richard S; Nettleton Dan; McCarter James P; Baum Thomas J
Sequence mining and transcript profiling to explore cyst nematode parasitism.
BMC genomics 2009;10():58.
2008: Skibbe David S; Wang Xiujuan; Borsuk Lisa A; Ashlock Daniel A; Nettleton Dan; Schnable Patrick S
Floret-specific differences in gene expression and support for the hypothesis that tapetal degeneration of Zea mays L. occurs via programmed cell death.
Journal of genetics and genomics = Yi chuan xue bao 2008;35(10):603-16.
2008: Guo Baoqing; Wang Ying; Shi Feng; Barton Yi-Wen; Plummer Paul; Reynolds Donald L; Nettleton Dan; Grinnage-Pulley Tara; Lin Jun; Zhang Qijing
CmeR functions as a pleiotropic regulator and is required for optimal colonization of Campylobacter jejuni in vivo.
Journal of bacteriology 2008;190(6):1879-90.
2008: Nettleton Dan; Recknor Justin; Reecy James M
Identification of differentially expressed gene categories in microarray studies using nonparametric multivariate analysis.
Bioinformatics (Oxford, England) 2008;24(2):192-201.
2008: Wang Yanfang; Couture Oliver P; Qu Long; Uthe Jolita J; Bearson Shawn M D; Kuhar Daniel; Lunney Joan K; Nettleton Dan; Dekkers Jack C M; Tuggle Christopher K
Analysis of porcine transcriptional response to Salmonella enterica serovar Choleraesuis suggests novel targets of NFkappaB are activated in the mesenteric lymph node.
BMC genomics 2008;9():437.
2008: Flagel Lex; Udall Joshua; Nettleton Dan; Wendel Jonathan
Duplicate gene expression in allopolyploid Gossypium reveals two temporally distinct phases of expression evolution.
BMC biology 2008;6():16.
2007: Madsen Melissa L; Oneal Michael J; Gardner Stuart W; Strait Erin L; Nettleton Dan; Thacker Eileen L; Minion F Chris
Array-based genomic comparative hybridization analysis of field strains of Mycoplasma hyopneumoniae.
Journal of bacteriology 2007;189(22):7977-82.
2007: Dembinsky Diana; Woll Katrin; Saleem Muhammad; Liu Yan; Fu Yan; Borsuk Lisa A; Lamkemeyer Tobias; Fladerer Claudia; Madlung Johannes; Barbazuk Brad; Nordheim Alfred; Nettleton Dan; Schnable Patrick S; Hochholdinger Frank
Transcriptomic and proteomic analyses of pericycle cells of the maize primary root.
Plant physiology 2007;145(3):575-88.
2007: Ohtsu Kazuhiro; Smith Marianne B; Emrich Scott J; Borsuk Lisa A; Zhou Ruilian; Chen Tianle; Zhang Xiaolan; Timmermans Marja C P; Beck Jon; Buckner Brent; Janick-Buckner Diane; Nettleton Dan; Scanlon Michael J; Schnable Patrick S
Global gene expression analysis of the shoot apical meristem of maize (Zea mays L.).
The Plant journal : for cell and molecular biology 2007;52(3):391-404.
2007: van de Mortel Martijn; Recknor Justin C; Graham Michelle A; Nettleton Dan; Dittman Jaime D; Nelson Rex T; Godoy Cláudia V; Abdelnoor Ricardo V; Almeida Alvaro M R; Baum Thomas J; Whitham Steven A
Distinct biphasic mRNA changes in response to Asian soybean rust infection.
Molecular plant-microbe interactions : MPMI 2007;20(8):887-99.
2007: Wang Yanfang; Qu Long; Uthe Jolita J; Bearson Shawn M D; Kuhar Daniel; Lunney Joan K; Couture Oliver P; Nettleton Dan; Dekkers Jack C M; Tuggle Christopher K
Global transcriptional response of porcine mesenteric lymph nodes to Salmonella enterica serovar Typhimurium.
Genomics 2007;90(1):72-84.
2007: Zhang Xiaolan; Madi Shahinez; Borsuk Lisa; Nettleton Dan; Elshire Robert J; Buckner Brent; Janick-Buckner Diane; Beck Jon; Timmermans Marja; Schnable Patrick S; Scanlon Michael J
Laser microdissection of narrow sheath mutant maize uncovers novel gene expression in the shoot apical meristem.
PLoS genetics 2007;3(6):e101.
2007: Ithal Nagabhushana; Recknor Justin; Nettleton Dan; Maier Tom; Baum Thomas J; Mitchum Melissa G
Developmental transcript profiling of cyst nematode feeding cells in soybean roots.
Molecular plant-microbe interactions : MPMI 2007;20(5):510-25.
2007: Zhang Wuyan; Carriquiry Alicia; Nettleton Dan; Dekkers Jack C M
Pooling mRNA in microarray experiments and its effect on power.
Bioinformatics (Oxford, England) 2007;23(10):1217-24.
2007: Yang Chunling; Guo Rong; Jie Fei; Nettleton Dan; Peng Jiqing; Carr Tyrell; Yeakley Joanne M; Fan Jian-Bing; Whitham Steven A
Spatial analysis of arabidopsis thaliana gene expression in response to Turnip mosaic virus infection.
Molecular plant-microbe interactions : MPMI 2007;20(4):358-70.
2007: Ithal Nagabhushana; Recknor Justin; Nettleton Dan; Hearne Leonard; Maier Tom; Baum Thomas J; Mitchum Melissa G
Parallel genome-wide expression profiling of host and pathogen during soybean cyst nematode infection of soybean.
Molecular plant-microbe interactions : MPMI 2007;20(3):293-305.
2007: Zhao H; Nettleton D; Dekkers J C M
Evaluation of linkage disequilibrium measures between multi-allelic markers as predictors of linkage disequilibrium between single nucleotide polymorphisms.
Genetical research 2007;89(1):1-6.
2007: Elling Axel A; Mitreva Makedonka; Recknor Justin; Gai Xiaowu; Martin John; Maier Thomas R; McDermott Jeffrey P; Hewezi Tarek; McK Bird David; Davis Eric L; Hussey Richard S; Nettleton Dan; McCarter James P; Baum Thomas J
Divergent evolution of arrested development in the dauer stage of Caenorhabditis elegans and the infective stage of Heterodera glycines.
Genome biology 2007;8(10):R211.
2007: Udall Joshua A; Flagel Lex E; Cheung Foo; Woodward Andrew W; Hovav Ran; Rapp Ryan A; Swanson Jordan M; Lee Jinsuk J; Gingle Alan R; Nettleton Dan; Town Christopher D; Chen Z Jeffrey; Wendel Jonathan F
Spotted cotton oligonucleotide microarrays for gene expression analysis.
BMC genomics 2007;8():81.
2006: Nettleton Dan
A discussion of statistical methods for design and analysis of microarray experiments for plant scientists.
The Plant cell 2006;18(9):2112-21.
2006: Caldo Rico A; Nettleton Dan; Peng Jiqing; Wise Roger P
Stage-specific suppression of basal defense discriminates barley plants containing fast- and delayed-acting Mla powdery mildew resistance alleles.
Molecular plant-microbe interactions : MPMI 2006;19(9):939-47.
2006: Skibbe David S; Wang Xiujuan; Zhao Xuefeng; Borsuk Lisa A; Nettleton Dan; Schnable Patrick S
Scanning microarrays at multiple intensities enhances discovery of differentially expressed genes.
Bioinformatics (Oxford, England) 2006;22(15):1863-70.
2006: Zhao Shu-Hong; Kuhar Daniel; Lunney Joan K; Dawson Harry; Guidry Catherine; Uthe Jolita J; Bearson Shawn M D; Recknor Justin; Nettleton Dan; Tuggle Christopher K
Gene expression profiling in Salmonella Choleraesuis-infected porcine lung using a long oligonucleotide microarray.
Mammalian genome : official journal of the International Mammalian Genome Society 2006;17(7):777-89.
2006: Udall Joshua A; Swanson Jordan M; Nettleton Dan; Percifield Ryan J; Wendel Jonathan F
A novel approach for characterizing expression levels of genes duplicated by polyploidy.
Genetics 2006;173(3):1823-7.
2006: Wang Dong; Nettleton Dan
Identifying genes associated with a quantitative trait or quantitative trait locus via selective transcriptional profiling.
Biometrics 2006;62(2):504-14.
2006: Che Ping; Lall Sonia; Nettleton Dan; Howell Stephen H
Gene expression programs during shoot, root, and callus development in Arabidopsis tissue culture.
Plant physiology 2006;141(2):620-37.
2006: Swanson-Wagner Ruth A; Jia Yi; DeCook Rhonda; Borsuk Lisa A; Nettleton Dan; Schnable Patrick S
All possible modes of gene action are observed in a global comparison of gene expression in a maize F1 hybrid and its inbred parents.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(18):6805-10.
2006: Madsen Melissa L; Nettleton Dan; Thacker Eileen L; Minion F Chris
Transcriptional profiling of Mycoplasma hyopneumoniae during iron depletion using microarrays.
Microbiology (Reading, England) 2006;152(Pt 4):937-44.
2006: Steelman Carissa A; Recknor Justin C; Nettleton Dan; Reecy James M
Transcriptional profiling of myostatin-knockout mice implicates Wnt signaling in postnatal skeletal muscle growth and hypertrophy.
The FASEB journal : official publication of the Federation of American Societies for Experimental Biology 2006;20(3):580-2.
2006: DeCook Rhonda; Lall Sonia; Nettleton Dan; Howell Stephen H
Genetic regulation of gene expression during shoot development in Arabidopsis.
Genetics 2006;172(2):1155-64.
2006: Madsen Melissa L; Nettleton Dan; Thacker Eileen L; Edwards Robert; Minion F Chris
Transcriptional profiling of Mycoplasma hyopneumoniae during heat shock using microarrays.
Infection and immunity 2006;74(1):160-6.
2005: Zhao Shu-Hong; Recknor Justin; Lunney Joan K; Nettleton Dan; Kuhar Daniel; Orley Sarah; Tuggle Christopher K
Validation of a first-generation long-oligonucleotide microarray for transcriptional profiling in the pig.
Genomics 2005;86(5):618-25.
2005: Woll Katrin; Borsuk Lisa A; Stransky Harald; Nettleton Dan; Schnable Patrick S; Hochholdinger Frank
Isolation, characterization, and pericycle-specific transcriptome analyses of the novel maize lateral and seminal root initiation mutant rum1.
Plant physiology 2005;139(3):1255-67.
2005: Zhao H; Nettleton D; Soller M; Dekkers J C M
Evaluation of linkage disequilibrium measures between multi-allelic markers as predictors of linkage disequilibrium between markers and QTL.
Genetical research 2005;86(1):77-87.
2005: Lee So Hyun; Zhao Shu-Hong; Recknor Justin C; Nettleton Dan; Orley Sarah; Kang Sung-Keun; Lee Byeong-Chun; Hwang Woo-Suk; Tuggle Christopher K
Transcriptional profiling using a novel cDNA array identifies differential gene expression during porcine embryo elongation.
Molecular reproduction and development 2005;71(2):129-39.
2005: Shen Chuan; Nettleton Daniel; Jiang Min; Kim Stuart K; Powell-Coffman Jo Anne
Roles of the HIF-1 hypoxia-inducible factor during hypoxia response in Caenorhabditis elegans.
The Journal of biological chemistry 2005;280(21):20580-8.
2005: Cocciolone Suzy M; Nettleton Dan; Snook Maurice E; Peterson Thomas
Transformation of maize with the p1 transcription factor directs production of silk maysin, a corn earworm resistance factor, in concordance with a hierarchy of floral organ pigmentation.
Plant biotechnology journal 2005;3(2):225-35.
2005: Shen Lishuang; Gong Jian; Caldo Rico A; Nettleton Dan; Cook Dianne; Wise Roger P; Dickerson Julie A
BarleyBase--an expression profiling database for plant genomics.
Nucleic acids research 2005;33(Database issue):D614-8.
2004: Caldo Rico A; Nettleton Dan; Wise Roger P
Interaction-dependent gene expression in Mla-specified response to barley powdery mildew.
The Plant cell 2004;16(9):2514-28.
2004: Lall Sonia; Nettleton Dan; DeCook Rhonda; Che Ping; Howell Stephen H
Quantitative trait loci associated with adventitious shoot formation in tissue culture and the program of shoot development in Arabidopsis.
Genetics 2004;167(4):1883-92.
2004: Fernando R L; Nettleton D; Southey B R; Dekkers J C M; Rothschild M F; Soller M
Controlling the proportion of false positives in multiple dependent tests.
Genetics 2004;166(1):611-9.
2003: Zhao S H; Nettleton D; Liu W; Fitzsimmons C; Ernst C W; Raney N E; Tuggle C K
Complementary DNA macroarray analyses of differential gene expression in porcine fetal and postnatal muscle.
Journal of animal science 2003;81(9):2179-88.
2003: Puthoff David P; Nettleton Dan; Rodermel Steven R; Baum Thomas J
Arabidopsis gene expression changes during cyst nematode parasitism revealed by statistical analyses of microarray expression profiles.
The Plant journal : for cell and molecular biology 2003;33(5):911-21.
2002: Frame Bronwyn R; Shou Huixia; Chikwamba Rachel K; Zhang Zhanyuan; Xiang Chengbin; Fonger Tina M; Pegg Sue Ellen K; Li Baochun; Nettleton Dan S; Pei Deqing; Wang Kan
Agrobacterium tumefaciens-mediated transformation of maize embryos using a standard binary vector system.
Plant physiology 2002;129(1):13-22.
2002: Carson James A; Nettleton Dan; Reecy James M
Differential gene expression in the rat soleus muscle during early work overload-induced hypertrophy.
The FASEB journal : official publication of the Federation of American Societies for Experimental Biology 2002;16(2):207-9.

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