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Jac Nickoloff
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Research Profile (preview)
Physiology
Disorders
Chemicals & Drugs
Living Beings
Anatomy
Genes & Molecular Sequences
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Network (preview)
6
Allen, Chris
6
Brenneman, Mark
6
Clikeman, Jennifer
6
Hromas, Robert
6
Miller, Cheryl
5
Kim, Perry
5
Lee, Suk-Hee
5
Bill, Colin
4
Durant, Stephen
4
Khalsa, GJ
4
Lo, Yi-Chen
4
Paffett, Kimberly
3
Osley, Mary Ann
3
Shen, Zhiyuan
3
Taghian, DG
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Publications
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All Publications
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2009: Shrivastav Meena; Miller Cheryl A; De Haro Leyma P; Durant Stephen T; Chen Benjamin P C; Chen David J; Nickoloff Jac A
DNA-PKcs and ATM co-regulate DNA double-strand break repair.
DNA repair 2009;8(8):920-9.
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2009: Wray Justin; Williamson Elizabeth A; Sheema Sheema; Lee Suk-Hee; Libby Edward; Willman Cheryl L; Nickoloff Jac A; Hromas Robert
Metnase mediates chromosome decatenation in acute leukemia cells.
Blood 2009;114(9):1852-8.
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2009: Tsukuda Toyoko; Lo Yi-Chen; Krishna Sanchita; Sterk Rosa; Osley Mary Ann; Nickoloff Jac A
INO80-dependent chromatin remodeling regulates early and late stages of mitotic homologous recombination.
DNA repair 2009;8(3):360-9.
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2009: Wray Justin; Williamson Elizabeth A; Royce Melanie; Shaheen Montaser; Beck Brian D; Lee Suk-Hee; Nickoloff Jac A; Hromas Robert
Metnase mediates resistance to topoisomerase II inhibitors in breast cancer cells.
PloS one 2009;4(4):e5323.
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2008: Hromas Robert; Wray Justin; Lee Suk-Hee; Martinez Leah; Farrington Jacqueline; Corwin Lori Kwan; Ramsey Heather; Nickoloff Jac A; Williamson Elizabeth A
The human set and transposase domain protein Metnase interacts with DNA Ligase IV and enhances the efficiency and accuracy of non-homologous end-joining.
DNA repair 2008;7(12):1927-37.
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2008: Williamson Elizabeth A; Rasila Kanwaldeep Kaur; Corwin Lori Kwan; Wray Justin; Beck Brian D; Severns Virginia; Mobarak Charlotte; Lee Suk-Hee; Nickoloff Jac A; Hromas Robert
The SET and transposase domain protein Metnase enhances chromosome decatenation: regulation by automethylation.
Nucleic acids research 2008;36(18):5822-31.
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2008: Nickoloff Jac A; De Haro Leyma P; Wray Justin; Hromas Robert
Mechanisms of leukemia translocations.
Current opinion in hematology 2008;15(4):338-45.
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2008: Wray Justin; Liu Jingmei; Nickoloff Jac A; Shen Zhiyuan
Distinct RAD51 associations with RAD52 and BCCIP in response to DNA damage and replication stress.
Cancer research 2008;68(8):2699-707.
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2008: Pohl Thomas J; Nickoloff Jac A
Rad51-independent interchromosomal double-strand break repair by gene conversion requires Rad52 but not Rad55, Rad57, or Dmc1.
Molecular and cellular biology 2008;28(3):897-906.
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2008: Shrivastav Meena; De Haro Leyma P; Nickoloff Jac A
Regulation of DNA double-strand break repair pathway choice.
Cell research 2008;18(1):134-47.
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2007: Wu Su; Shi Yujiang; Mulligan Peter; Gay Frédérique; Landry Joseph; Liu Huifei; Lu Ju; Qi Hank H; Wang Weijia; Nickoloff Jac A; Wu Carl; Shi Yang
A YY1-INO80 complex regulates genomic stability through homologous recombination-based repair.
Nature structural & molecular biology 2007;14(12):1165-72.
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2007: Krishna Sanchita; Wagener Brant M; Liu Hui Ping; Lo Yi-Chen; Sterk Rosa; Petrini John H J; Nickoloff Jac A
Mre11 and Ku regulation of double-strand break repair by gene conversion and break-induced replication.
DNA repair 2007;6(6):797-808.
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2007: Osley Mary Ann; Tsukuda Toyoko; Nickoloff Jac A
ATP-dependent chromatin remodeling factors and DNA damage repair.
Mutation research 2007;618(1-2):65-80.
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2007: Huang Lei; Kim Perry M; Nickoloff Jac A; Morgan William F
Targeted and nontargeted effects of low-dose ionizing radiation on delayed genomic instability in human cells.
Cancer research 2007;67(3):1099-104.
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2007: Lu Huimei; Yue Jingyin; Meng Xiangbing; Nickoloff Jac A; Shen Zhiyuan
BCCIP regulates homologous recombination by distinct domains and suppresses spontaneous DNA damage.
Nucleic acids research 2007;35(21):7160-70.
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2006: Durant Stephen T; Paffett Kimberly S; Shrivastav Meena; Timmins Graham S; Morgan William F; Nickoloff Jac A
UV radiation induces delayed hyperrecombination associated with hypermutation in human cells.
Molecular and cellular biology 2006;26(16):6047-55.
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2006: Lo Yi-Chen; Paffett Kimberly S; Amit Or; Clikeman Jennifer A; Sterk Rosa; Brenneman Mark A; Nickoloff Jac A
Sgs1 regulates gene conversion tract lengths and crossovers independently of its helicase activity.
Molecular and cellular biology 2006;26(11):4086-94.
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2006: Schildkraut Ezra; Miller Cheryl A; Nickoloff Jac A
Transcription of a donor enhances its use during double-strand break-induced gene conversion in human cells.
Molecular and cellular biology 2006;26(8):3098-105.
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2005: Lee Suk-Hee; Oshige Masahiko; Durant Stephen T; Rasila Kanwaldeep Kaur; Williamson Elizabeth A; Ramsey Heather; Kwan Lori; Nickoloff Jac A; Hromas Robert
The SET domain protein Metnase mediates foreign DNA integration and links integration to nonhomologous end-joining repair.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(50):18075-80.
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2005: Tsukuda Toyoko; Fleming Alastair B; Nickoloff Jac A; Osley Mary Ann
Chromatin remodelling at a DNA double-strand break site in Saccharomyces cerevisiae.
Nature 2005;438(7066):379-83.
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2005: Durant Stephen T; Nickoloff Jac A
Good timing in the cell cycle for precise DNA repair by BRCA1.
Cell cycle (Georgetown, Tex.) 2005;4(9):1216-22.
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2005: Paffett Kimberly S; Clikeman Jennifer A; Palmer Sean; Nickoloff Jac A
Overexpression of Rad51 inhibits double-strand break-induced homologous recombination but does not affect gene conversion tract lengths.
DNA repair 2005;4(6):687-98.
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2005: Lo Yi-Chen; Kurtz Richard B; Nickoloff Jac A
Analysis of chromosome/allele loss in genetically unstable yeast by quantitative real-time PCR.
BioTechniques 2005;38(5):685-6, 688, 690.
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2005: Lu Huimei; Guo Xu; Meng Xiangbing; Liu Jingmei; Allen Chris; Wray Justin; Nickoloff Jac A; Shen Zhiyuan
The BRCA2-interacting protein BCCIP functions in RAD51 and BRCA2 focus formation and homologous recombinational repair.
Molecular and cellular biology 2005;25(5):1949-57.
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2005: Convery Erin; Shin Euy Kyun; Ding Qi; Wang Wei; Douglas Pauline; Davis Laurie S; Nickoloff Jac A; Lees-Miller Susan P; Meek Katheryn
Inhibition of homologous recombination by variants of the catalytic subunit of the DNA-dependent protein kinase (DNA-PKcs).
Proceedings of the National Academy of Sciences of the United States of America 2005;102(5):1345-50.
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2005: Schildkraut Ezra; Miller Cheryl A; Nickoloff Jac A
Gene conversion and deletion frequencies during double-strand break repair in human cells are controlled by the distance between direct repeats.
Nucleic acids research 2005;33(5):1574-80.
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2004: Huang Lei; Grim Suzanne; Smith Leslie E; Kim Perry M; Nickoloff Jac A; Goloubeva Olga G; Morgan William F
Ionizing radiation induces delayed hyperrecombination in Mammalian cells.
Molecular and cellular biology 2004;24(11):5060-8.
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2004: Miller Cheryl A; Bill Colin A; Nickoloff Jac A
Characterization of palindromic loop mismatch repair tracts in mammalian cells.
DNA repair 2004;3(4):421-8.
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2004: Bailey Susan M; Brenneman Mark A; Halbrook James; Nickoloff Jac A; Ullrich Robert L; Goodwin Edwin H
The kinase activity of DNA-PK is required to protect mammalian telomeres.
DNA repair 2004;3(3):225-33.
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2004: Wang Huichen; Boecker Wilfried; Wang Hongyan; Wang Xiang; Guan Jun; Thompson Larry H; Nickoloff Jac A; Iliakis George
Caffeine inhibits homology-directed repair of I-SceI-induced DNA double-strand breaks.
Oncogene 2004;23(3):824-34.
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2004: Nickoloff Jac A; Brenneman Mark A
Analysis of recombinational repair of DNA double-strand breaks in mammalian cells with I-SceI nuclease.
Methods in molecular biology (Clifton, N.J.) 2004;262():35-52.
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2003: Allen Chris; Halbrook James; Nickoloff Jac A
Interactive competition between homologous recombination and non-homologous end joining.
Molecular cancer research : MCR 2003;1(12):913-20.
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2003: Allen Chris; Miller Cheryl A; Nickoloff Jac A
The mutagenic potential of a single DNA double-strand break in a mammalian chromosome is not influenced by transcription.
DNA repair 2003;2(10):1147-56.
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2003: Winn Louise M; Kim Perry M; Nickoloff Jac A
Oxidative stress-induced homologous recombination as a novel mechanism for phenytoin-initiated toxicity.
The Journal of pharmacology and experimental therapeutics 2003;306(2):523-7.
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2003: Palmer Sean; Schildkraut Ezra; Lazarin Raquel; Nguyen Jimmy; Nickoloff Jac A
Gene conversion tracts in Saccharomyces cerevisiae can be extremely short and highly directional.
Nucleic acids research 2003;31(4):1164-73.
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2002: Brenneman Mark A; Wagener Brant M; Miller Cheryl A; Allen Chris; Nickoloff Jac A
XRCC3 controls the fidelity of homologous recombination: roles for XRCC3 in late stages of recombination.
Molecular cell 2002;10(2):387-95.
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2002: Kim Perry M; Paffett Kimberly S; Solinger Jachen A; Heyer Wolf-Dietrich; Nickoloff Jac A
Spontaneous and double-strand break-induced recombination, and gene conversion tract lengths, are differentially affected by overexpression of wild-type or ATPase-defective yeast Rad54.
Nucleic acids research 2002;30(13):2727-35.
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2002: Allen Chris; Kurimasa Akihiro; Brenneman Mark A; Chen David J; Nickoloff Jac A
DNA-dependent protein kinase suppresses double-strand break-induced and spontaneous homologous recombination.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(6):3758-63.
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2001: Kim P M; Allen C; Wagener B M; Shen Z; Nickoloff J A
Overexpression of human RAD51 and RAD52 reduces double-strand break-induced homologous recombination in mammalian cells.
Nucleic acids research 2001;29(21):4352-60.
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2001: Bill C A; Nickoloff J A
Spontaneous and ultraviolet light-induced direct repeat recombination in mammalian cells frequently results in repeat deletion.
Mutation research 2001;487(1-2):41-50.
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2001: Weng Y; Barton S L; Cho J W; Nickoloff J A
Marker structure and recombination substrate environment influence conversion preference of broken and unbroken alleles in Saccharomyces cerevisiae.
Molecular genetics and genomics : MGG 2001;265(3):461-8.
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2001: Clikeman J A; Wheeler S L; Nickoloff J A
Efficient incorporation of large (>2 kb) heterologies into heteroduplex DNA: Pms1/Msh2-dependent and -independent large loop mismatch repair in Saccharomyces cerevisiae.
Genetics 2001;157(4):1481-91.
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2001: Bill C A; Taghian D G; Duran W A; Nickoloff J A
Repair bias of large loop mismatches during recombination in mammalian cells depends on loop length and structure.
Mutation research 2001;485(3):255-65.
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2001: Clikeman J A; Khalsa G J; Barton S L; Nickoloff J A
Homologous recombinational repair of double-strand breaks in yeast is enhanced by MAT heterozygosity through yKU-dependent and -independent mechanisms.
Genetics 2001;157(2):579-89.
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2000: Weng Y S; Xing D; Clikeman J A; Nickoloff J A
Transcriptional effects on double-strand break-induced gene conversion tracts.
Mutation research 2000;461(2):119-32.
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2000: Brenneman M A; Weiss A E; Nickoloff J A; Chen D J
XRCC3 is required for efficient repair of chromosome breaks by homologous recombination.
Mutation research 2000;459(2):89-97.
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1999: Nickoloff J A; Sweetser D B; Clikeman J A; Khalsa G J; Wheeler S L
Multiple heterologies increase mitotic double-strand break-induced allelic gene conversion tract lengths in yeast.
Genetics 1999;153(2):665-79.
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1999: Myers T A; Nickoloff J A
Nonselective colony-color assays for HIS3, LEU2, LYS2, TRP1 and URA3 in ade2 yeast strains using media with limiting nutrients.
BioTechniques 1999;26(5):850-4.
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1999: Wheeler S L; Khalsa G J; Nickoloff J A
PCR alone is insufficient for identifying structural modifications to yeast chromosomes.
BioTechniques 1999;26(2):238-40.
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1998: Nickoloff J A; Spirio L N; Reynolds R J
A comparison of calcium phosphate coprecipitation and electroporation. Implications for studies on the genetic effects of DNA damage.
Molecular biotechnology 1998;10(2):93-101.
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1998: Cho J W; Khalsa G J; Nickoloff J A
Gene-conversion tract directionality is influenced by the chromosome environment.
Current genetics 1998;34(4):269-79.
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1998: Bill C A; Duran W A; Miselis N R; Nickoloff J A
Efficient repair of all types of single-base mismatches in recombination intermediates in Chinese hamster ovary cells. Competition between long-patch and G-T glycosylase-mediated repair of G-T mismatches.
Genetics 1998;149(4):1935-43.
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1998: Ray F A; Waltman M J; Lehman J M; Little J B; Nickoloff J A; Kraemer P M
Identification of SV40 T-antigen mutants that alter T-antigen-induced chromosome damage in human fibroblasts.
Cytometry 1998;31(4):242-50.
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1998: Taghian D G; Hough H; Nickoloff J A
Biased short tract repair of palindromic loop mismatches in mammalian cells.
Genetics 1998;148(3):1257-68.
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1998: Weng Y S; Nickoloff J A
Evidence for independent mismatch repair processing on opposite sides of a double-strand break in Saccharomyces cerevisiae.
Genetics 1998;148(1):59-70.
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1997: Taghian D G; Nickoloff J A
Chromosomal double-strand breaks induce gene conversion at high frequency in mammalian cells.
Molecular and cellular biology 1997;17(11):6386-93.
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1997: Bill C A; Yu Y; Miselis N R; Little J B; Nickoloff J A
A role for p53 in DNA end rejoining by human cell extracts.
Mutation research 1997;385(1):21-9.
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1997: Miller E M; Hough H L; Cho J W; Nickoloff J A
Mismatch repair by efficient nick-directed, and less efficient mismatch-specific, mechanisms in homologous recombination intermediates in Chinese hamster ovary cells.
Genetics 1997;147(2):743-53.
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1997: Weng Y S; Nickoloff J A
Nonselective URA3 colony-color assay in yeast ade1 or ade2 mutants.
BioTechniques 1997;23(2):237-41.
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1996: Nelson H H; Sweetser D B; Nickoloff J A
Effects of terminal nonhomology and homeology on double-strand-break-induced gene conversion tract directionality.
Molecular and cellular biology 1996;16(6):2951-7.
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1996: Weng Y S; Whelden J; Gunn L; Nickoloff J A
Double-strand break-induced mitotic gene conversion: examination of tract polarity and products of multiple recombinational repair events.
Current genetics 1996;29(4):335-43.
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1996: Nickoloff J A; Deng W P; Miller E M; Ray F A
Site-directed mutagenesis of double-stranded plasmids, domain substitution, and marker rescue by comutagenesis of restriction enzyme sites.
Methods in molecular biology (Clifton, N.J.) 1996;58():455-68.
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1996: Taghian D G; Nickoloff J A
Subcloning strategies and protocols.
Methods in molecular biology (Clifton, N.J.) 1996;58():221-35.
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1995: Gunn L; Nickoloff J A
Rapid transfer of low copy-number episomal plasmids from Saccharomyces cerevisiae to Escherichia coli by electroporation.
Molecular biotechnology 1995;3(2):79-84.
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1995: Ray F A; Miller E M; Nickoloff J A
Efficient marker rescue and domain replacement without fragment subcloning.
Analytical biochemistry 1995;224(1):440-3.
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1995: Taghian D G; Nickoloff J A
Electrotransformation of Chinese hamster ovary cells.
Methods in molecular biology (Clifton, N.J.) 1995;48():115-21.
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1995: Gunn L; Whelden J; Nickoloff J A
Transfer of episomal and integrated plasmids from Saccharomyces cerevisiae to Escherichia coli by electroporation.
Methods in molecular biology (Clifton, N.J.) 1995;47():55-66.
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1995: Miller E M; Nickoloff J A
Escherichia coli electrotransformation.
Methods in molecular biology (Clifton, N.J.) 1995;47():105-13.
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1994: Xia F; Amundson S A; Nickoloff J A; Liber H L
Different capacities for recombination in closely related human lymphoblastoid cell lines with different mutational responses to X-irradiation.
Molecular and cellular biology 1994;14(9):5850-7.
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1994: Sweetser D B; Hough H; Whelden J F; Arbuckle M; Nickoloff J A
Fine-resolution mapping of spontaneous and double-strand break-induced gene conversion tracts in Saccharomyces cerevisiae reveals reversible mitotic conversion polarity.
Molecular and cellular biology 1994;14(6):3863-75.
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1994: Nickoloff J A
Sepharose spin column chromatography. A fast, nontoxic replacement for phenol:chloroform extraction/ethanol precipitation.
Molecular biotechnology 1994;1(1):105-8.
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1994: Deng W P; Nickoloff J A
Mismatch repair of heteroduplex DNA intermediates of extrachromosomal recombination in mammalian cells.
Molecular and cellular biology 1994;14(1):400-6.
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1994: Deng W P; Nickoloff J A
Preferential repair of UV damage in highly transcribed DNA diminishes UV-induced intrachromosomal recombination in mammalian cells.
Molecular and cellular biology 1994;14(1):391-9.
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1992: Nickoloff J A
Transcription enhances intrachromosomal homologous recombination in mammalian cells.
Molecular and cellular biology 1992;12(12):5311-8.
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1992: Nickoloff J A; Reynolds R J
Electroporation-mediated gene transfer efficiency is reduced by linear plasmid carrier DNAs.
Analytical biochemistry 1992;205(2):237-43.
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1992: Ray F A; Nickoloff J A
Site-specific mutagenesis of almost any plasmid using a PCR-based version of unique site elimination.
BioTechniques 1992;13(3):342-8.
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1992: Nickoloff J A
Converting restriction sites by filling in 5' extensions.
BioTechniques 1992;12(4):512-4.
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1992: Deng W P; Nickoloff J A
Site-directed mutagenesis of virtually any plasmid by eliminating a unique site.
Analytical biochemistry 1992;200(1):81-8.
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1991: Nickoloff J A; Reynolds R J
Subcloning with new ampicillin- and kanamycin-resistant analogs of pUC19.
BioTechniques 1991;10(4):469-70, 472.
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1990: Nickoloff J A; Reynolds R J
Transcription stimulates homologous recombination in mammalian cells.
Molecular and cellular biology 1990;10(9):4837-45.
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