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Karsten Niehaus

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Christian Rückert; Rafael Szczepanowski; Andreas Albersmeier; Arwa Al-Dilaimi; Karsten Niehaus; Jörn Kalinowski
Genome sequence of the halotolerant bacterium Corynebacterium halotolerans type strain YIM 70093(T) (= DSM 44683(T)).
Yvonne Stolze; Eva M Top; Prisca Viehöver; Daniel Wibberg; Susanne Schneiker-Bekel; Aiko Barsch; Gerrit Brandis; Felix Eikmeyer; Christina Karsten; Matthias Keck; Irene Krahn; Karsten Niehaus; Andreas Schlüter
IncP-1β plasmids of Comamonas sp. and Delftia sp. strains isolated from a wastewater treatment plant mediate resistance to and decolorization of the triphenylmethane dye crystal violet.
K Gorzolka; N Kessler; M Lissel; S Loch-Ahring; Karsten Niehaus
Metabolite fingerprinting of barley whole seeds, endosperms, and embryos during industrial malting.

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2012: Christian Rückert; Rafael Szczepanowski; Andreas Albersmeier; Arwa Al-Dilaimi; Karsten Niehaus; Jörn Kalinowski
Genome sequence of the halotolerant bacterium Corynebacterium halotolerans type strain YIM 70093(T) (= DSM 44683(T)).
Standards in genomic sciences 2012;7(2):284-93.
2012: Yvonne Stolze; Eva M Top; Prisca Viehöver; Daniel Wibberg; Susanne Schneiker-Bekel; Aiko Barsch; Gerrit Brandis; Felix Eikmeyer; Christina Karsten; Matthias Keck; Irene Krahn; Karsten Niehaus; Andreas Schlüter
IncP-1β plasmids of Comamonas sp. and Delftia sp. strains isolated from a wastewater treatment plant mediate resistance to and decolorization of the triphenylmethane dye crystal violet.
Microbiology (Reading, England) 2012;158(Pt 8):2060-72.
2012: K Gorzolka; N Kessler; M Lissel; S Loch-Ahring; Karsten Niehaus
Metabolite fingerprinting of barley whole seeds, endosperms, and embryos during industrial malting.
Journal of biotechnology 2012;159(3):177-87.
2012: Leonard Muriithi Kiirika; Joschka Korte; Karsten Niehaus; Christine Schikowsky; UK Schmitz; Diana Wimmer; Hannah Friederike Bergmann; Frank Colditz
Silencing of the Rac1 GTPase MtROP9 in Medicago truncatula stimulates early mycorrhizal and oomycete root colonizations but negatively affects rhizobial infection.
Plant physiology 2012;159(1):501-16.
2012: Frank-Jörg Vorhölter; Heinrich-Günter Wiggerich; Helge Küster; Kalina Mrozek; Alfred Pühler; Heiko Scheidle; Vishaldeep Kaur Sidhu; Karsten Niehaus
Involvement of bacterial TonB-dependent signaling in the generation of an oligogalacturonide damage-associated molecular pattern from plant cell walls exposed to Xanthomonas campestris pv. campestris pectate lyases.
BMC microbiology 2012;12():239.
2012: Nils Hoffmann; Petra Högy; Matthias Keck; Heiko Neuweger; Karsten Niehaus; Mathias Wilhelm; Jens Stoye
Combining peak- and chromatogram-based retention time alignment algorithms for multiple chromatography-mass spectrometry datasets.
BMC bioinformatics 2012;13():214.
2011: Mustafa Fazli; Michael Givskov; Karsten Niehaus; Martin Nilsson; Aileen O'Connell; Robert P Ryan; J Maxwell Dow; Tim Tolker-Nielsen
The CRP/FNR family protein Bcam1349 is a c-di-GMP effector that regulates biofilm formation in the respiratory pathogen Burkholderia cenocepacia.
Molecular microbiology 2011;82(2):327-41.
2011: Sarah Schatschneider; Frank-Jörg Vorhölter; Anke Becker; Wolfgang Eisenreich; Alfred Pühler; Christian Rückert; Karsten Niehaus
Genome-enabled determination of amino acid biosynthesis in Xanthomonas campestris pv. campestris and identification of biosynthetic pathways for alanine, glycine, and isoleucine by 13C-isotopologue profiling.
Molecular genetics and genomics : MGG 2011;286(3-4):247-59.
2011: Pilar Martinez-Moya; Karsten Niehaus; Steven Alexander Watt; Jennifer Alcaíno; Marcelo Baeza; Víctor Cifuentes
Proteomic analysis of the carotenogenic yeast Xanthophyllomyces dendrorhous.
BMC microbiology 2011;11():131.
2010: Gomathi Gandhi Gokulakannan; Karsten Niehaus
Characterization of the Medicago truncatula cell wall proteome in cell suspension culture upon elicitation and suppression of plant defense.
Journal of plant physiology 2010;167(18):1533-41.
2010: Armin Gölzhäuser; Tim W Nattkemper; Karsten Niehaus; Alfred Pühler; Markus Sauer
BioImaging: Contributions from biology, physics and informatics.
Journal of biotechnology 2010;149(4):227-8.
2010: Leif Schenkluhn; Natalija Hohnjec; Karsten Niehaus; Udo Schmitz; Frank Colditz
Differential gel electrophoresis (DIGE) to quantitatively monitor early symbiosis- and pathogenesis-induced changes of the Medicago truncatula root proteome.
Journal of proteomics 2010;73(4):753-68.
2010: Markus Christian Baier; Matthias Keck; Victoria Gödde; Karsten Niehaus; Helge Küster; Natalija Hohnjec
Knockdown of the symbiotic sucrose synthase MtSucS1 affects arbuscule maturation and maintenance in mycorrhizal roots of Medicago truncatula.
Plant physiology 2010;152(2):1000-14.
2010: J Schneider; Frank-Jörg Vorhölter; Eva Trost; J Blom; Y R Musa; H Neuweger; Karsten Niehaus; S Schatschneider; Andreas Tauch; Alexander Goesmann
CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks.
Genetics and molecular research : GMR 2010;9(3):1660-72.
2009: Tony Francis Watt; Mihael Vucur; Birgit Baumgarth; Steven Alexander Watt; Karsten Niehaus
Low molecular weight plant extract induces metabolic changes and the secretion of extracellular enzymes, but has a negative effect on the expression of the type-III secretion system in Xanthomonas campestris pv. campestris.
Journal of biotechnology 2009;140(1-2):59-67.
2009: Nickels A Jensen; Klaus Gerth; Tim Grotjohann; Dieter Kapp; Matthias Keck; Karsten Niehaus
Establishment of a high content assay for the identification and characterisation of bioactivities in crude bacterial extracts that interfere with the eukaryotic cell cycle.
Journal of biotechnology 2009;140(1-2):124-34.
2009: Naryttza N Diaz; Lutz Krause; Alexander Goesmann; Karsten Niehaus; Tim W Nattkemper
TACOA: taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach.
BMC bioinformatics 2009;10():56.
2008: Heiko Neuweger; Stefan Albaum; Michael Dondrup; Marcus Persicke; Tony Watt; Karsten Niehaus; Jens Stoye; Alexander Goesmann
MeltDB: a software platform for the analysis and integration of metabolomics experiment data.
Bioinformatics (Oxford, England) 2008;24(23):2726-32.
2008: Andreas Schlüter; Thomas Bekel; Naryttza N Diaz; Michael Dondrup; Rudolf Eichenlaub; Karl-Heinz Gartemann; Irene Krahn; Lutz Krause; Holger Krömeke; Olaf Kruse; Jan H Mussgnug; Heiko Neuweger; Karsten Niehaus; Alfred Pühler; Kai J Runte; Rafael Szczepanowski; Andreas Tauch; Alexandra Tilker; Prisca Viehöver; Alexander Goesmann
The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology.
Journal of biotechnology 2008;136(1-2):77-90.
2008: Michael Stiens; Anke Becker; Thomas Bekel; Victoria Gödde; Alexander Goesmann; Karsten Niehaus; Susanne Schneiker-Bekel; Werner Selbitschka; Stefan Weidner; Andreas Schlüter; Alfred Pühler
Comparative genomic hybridisation and ultrafast pyrosequencing revealed remarkable differences between the Sinorhizobium meliloti genomes of the model strain Rm1021 and the field isolate SM11.
Journal of biotechnology 2008;136(1-2):31-7.
2008: Javier Serrania; Frank-Jörg Vorhölter; Karsten Niehaus; Alfred Pühler; Anke Becker
Identification of Xanthomonas campestris pv. campestris galactose utilization genes from transcriptome data.
Journal of biotechnology 2008;135(3):309-17.
2008: Frank-Jörg Vorhölter; Susanne Schneiker; Alexander Goesmann; Lutz Krause; Thomas Bekel; Olaf Kaiser; Burkhard Linke; Thomas Patschkowski; Christian Rückert; Joachim Schmid; Vishaldeep Kaur Sidhu; Volker Sieber; Andreas Tauch; Steven Alexander Watt; Bernd Weisshaar; Anke Becker; Karsten Niehaus; Alfred Pühler
The genome of Xanthomonas campestris pv. campestris B100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis.
Journal of biotechnology 2008;134(1-2):33-45.
2008: Vishaldeep K Sidhu; Frank-Jörg Vorhölter; Karsten Niehaus; Steven Alexander Watt
Analysis of outer membrane vesicle associated proteins isolated from the plant pathogenic bacterium Xanthomonas campestris pv. campestris.
BMC microbiology 2008;8():87.
2008: Chandran Vijayendran; Aiko Barsch; Karl Friehs; Karsten Niehaus; Anke Becker; Erwin Flaschel
Perceiving molecular evolution processes in Escherichia coli by comprehensive metabolite and gene expression profiling.
Genome biology 2008;9(4):R72.
2007: Chandran Vijayendran; Sebastian Burgemeister; Karl Friehs; Karsten Niehaus; Erwin Flaschel
2DBase: 2D-PAGE database of Escherichia coli.
Biochemical and biophysical research communications 2007;363(3):822-7.
2007: Jens Plassmeier; Aiko Barsch; Marcus Persicke; Karsten Niehaus; Jörn Kalinowski
Investigation of central carbon metabolism and the 2-methylcitrate cycle in Corynebacterium glutamicum by metabolic profiling using gas chromatography-mass spectrometry.
Journal of biotechnology 2007;130(4):354-63.
2007: Frank Colditz; Karsten Niehaus; Franziska Krajinski
Silencing of PR-10-like proteins in Medicago truncatula results in an antagonistic induction of other PR proteins and in an increased tolerance upon infection with the oomycete Aphanomyces euteiches.
Planta 2007;226(1):57-71.
2007: Ralf Stracke; Hirofumi Ishihara; Gunnar Huep; Aiko Barsch; Frank Mehrtens; Karsten Niehaus; Bernd Weisshaar
Differential regulation of closely related R2R3-MYB transcription factors controls flavonol accumulation in different parts of the Arabidopsis thaliana seedling.
The Plant journal : for cell and molecular biology 2007;50(4):660-77.
2007: Chandran Vijayendran; Tino Polen; Volker F Wendisch; Karl Friehs; Karsten Niehaus; Erwin Flaschel
The plasticity of global proteome and genome expression analyzed in closely related W3110 and MG1655 strains of a well-studied model organism, Escherichia coli-K12.
Journal of biotechnology 2007;128(4):747-61.
2007: Verena Tellström; Björn Usadel; Oliver Thimm; Mark Stitt; Helge Küster; Karsten Niehaus
The lipopolysaccharide of Sinorhizobium meliloti suppresses defense-associated gene expression in cell cultures of the host plant Medicago truncatula.
Plant physiology 2007;143(2):825-37.
2007: Zbigniew Kaczyński; Sebastian Braun; Buko Lindner; Karsten Niehaus; Otto Holst
Investigation of the chemical structure and biological activity of oligosaccharides isolated from rough-type Xanthomonas campestris pv. campestris B100 lipopolysaccharide.
Journal of endotoxin research 2007;13(2):101-8.
2006: Aiko Barsch; Helena G Carvalho; Julie V Cullimore; Karsten Niehaus
GC-MS based metabolite profiling implies three interdependent ways of ammonium assimilation in Medicago truncatula root nodules.
Journal of biotechnology 2006;127(1):79-83.
2006: Anke Nodop; Iwane Suzuki; Aiko Barsch; Ann-Kristin Schröder; Karsten Niehaus; Dorothee Staiger; Elfriede K Pistorius; Klaus-Peter Michel
Physiological and molecular characterization of a Synechocystis sp. PCC 6803 mutant lacking histidine kinase Slr1759 and response regulator Slr1760.
Zeitschrift für Naturforschung. C, Journal of biosciences 2006;61(11-12):865-78.
2006: Steven Alexander Watt; Verena Tellström; Thomas Patschkowski; Karsten Niehaus
Identification of the bacterial superoxide dismutase (SodM) as plant-inducible elicitor of an oxidative burst reaction in tobacco cell suspension cultures.
Journal of biotechnology 2006;126(1):78-86.
2006: Christian Zörb; Georg Langenkämper; Thomas Betsche; Karsten Niehaus; Aiko Barsch
Metabolite profiling of wheat grains (Triticum aestivum L.) from organic and conventional agriculture.
Journal of agricultural and food chemistry 2006;54(21):8301-6.
2006: Aiko Barsch; Verena Tellström; Thomas Patschkowski; Helge Küster; Karsten Niehaus
Metabolite profiles of nodulated alfalfa plants indicate that distinct stages of nodule organogenesis are accompanied by global physiological adaptations.
Molecular plant-microbe interactions : MPMI 2006;19(9):998-1013.
2005: Frank Colditz; Hans-Peter Braun; Christophe Jacquet; Karsten Niehaus; Franziska Krajinski
Proteomic profiling unravels insights into the molecular background underlying increased Aphanomyces euteiches-tolerance of Medicago truncatula.
Plant molecular biology 2005;59(3):387-406.
2005: Sebastian G Braun; Andreas Meyer; Otto Holst; Alfred Pühler; Karsten Niehaus
Characterization of the Xanthomonas campestris pv. campestris lipopolysaccharide substructures essential for elicitation of an oxidative burst in tobacco cells.
Molecular plant-microbe interactions : MPMI 2005;18(7):674-81.
2005: Ivanka Asparuhova Yaneva; Karsten Niehaus
Molecular cloning and characterisation of a Rab-binding GDP-dissociation inhibitor from Medicago truncatula.
Plant physiology and biochemistry : PPB / Société française de physiologie végétale 2005;43(3):203-12.
2005: Heiko Scheidle; Andrea Gross; Karsten Niehaus
The Lipid A substructure of the Sinorhizobium meliloti lipopolysaccharides is sufficient to suppress the oxidative burst in host plants.
The New phytologist 2005;165(2):559-65.
2005: Andrea Gross; Dieter Kapp; Tim Nielsen; Karsten Niehaus
Endocytosis of Xanthomonas campestris pathovar campestris lipopolysaccharides in non-host plant cells of Nicotiana tabacum.
The New phytologist 2005;165(1):215-26.
2005: Steven Alexander Watt; Andreas Wilke; Thomas Patschkowski; Karsten Niehaus
Comprehensive analysis of the extracellular proteins from Xanthomonas campestris pv. campestris B100.
Proteomics 2005;5(1):153-67.
2005: Nicolas Fraysse; Buko Lindner; Zbigniew Kaczynski; Larissa A Sharypova; Otto Holst; Karsten Niehaus; Véréna Poinsot
Sinorhizobium meliloti strain 1021 produces a low-molecular-mass capsular polysaccharide that is a homopolymer of 3-deoxy-D-manno-oct-2-ulosonic acid harboring a phospholipid anchor.
Glycobiology 2005;15(1):101-8.
2004: Michael Hartmann; Aiko Barsch; Karsten Niehaus; Alfred Pühler; Andreas Tauch; Jörn Kalinowski
The glycosylated cell surface protein Rpf2, containing a resuscitation-promoting factor motif, is involved in intercellular communication of Corynebacterium glutamicum.
Archives of microbiology 2004;182(4):299-312.
2004: Aiko Barsch; Thomas Patschkowski; Karsten Niehaus
Comprehensive metabolite profiling of Sinorhizobium meliloti using gas chromatography-mass spectrometry.
Functional & integrative genomics 2004;4(4):219-30.
2004: Martina Brecht; Katherina Sewald; Karin Schiene; Gunnar Keen; Matthias Fricke; Markus Sauer; Karsten Niehaus
The use of surface plasmon resonance (SPR) and fluorescence resonance energy transfer (FRET) to monitor the interaction of the plant G-proteins Ms-Rac1 and Ms-Rac4 with GTP.
Journal of biotechnology 2004;112(1-2):151-64.
2004: Karin Schiene; S Donath; Martina Brecht; Alfred Pühler; Karsten Niehaus
A Rab-related small GTP binding protein is predominantly expressed in root nodules of Medicago sativa.
Molecular genetics and genomics : MGG 2004;272(1):57-66.
2004: Frank Colditz; Oyunbileg Nyamsuren; Karsten Niehaus; Holger Eubel; Hans-Peter Braun; Franziska Krajinski
Proteomic approach: identification of Medicago truncatula proteins induced in roots after infection with the pathogenic oomycete Aphanomyces euteiches.
Plant molecular biology 2004;55(1):109-20.
2003: Steven Alexander Watt; Thomas Patschkowski; Jörn Kalinowski; Karsten Niehaus
Qualitative and quantitative proteomics by two-dimensional gel electrophoresis, peptide mass fingerprint and a chemically-coded affinity tag (CCAT).
Journal of biotechnology 2003;106(2-3):287-300.
2003: Frank-Jörg Vorhölter; T Thias; Folker Meyer; Thomas Bekel; Olaf Kaiser; Alfred Pühler; Karsten Niehaus
Comparison of two Xanthomonas campestris pathovar campestris genomes revealed differences in their gene composition.
Journal of biotechnology 2003;106(2-3):193-202.
2003: Gordon R O Campbell; Larissa A Sharypova; Heiko Scheidle; Kathryn M Jones; Karsten Niehaus; Anke Becker; Graham C Walker
Striking complexity of lipopolysaccharide defects in a collection of Sinorhizobium meliloti mutants.
Journal of bacteriology 2003;185(13):3853-62.
2003: Sven Brand; Karsten Niehaus; Alfred Pühler; Jörn Kalinowski
Identification and functional analysis of six mycolyltransferase genes of Corynebacterium glutamicum ATCC 13032: the genes cop1, cmt1, and cmt2 can replace each other in the synthesis of trehalose dicorynomycolate, a component of the mycolic acid layer of the cell envelope.
Archives of microbiology 2003;180(1):33-44.
2003: Larissa A Sharypova; Karsten Niehaus; Heiko Scheidle; Otto Holst; Anke Becker
Sinorhizobium meliloti acpXL mutant lacks the C28 hydroxylated fatty acid moiety of lipid A and does not express a slow migrating form of lipopolysaccharide.
The Journal of biological chemistry 2003;278(15):12946-54.
2001: Frank-Jörg Vorhölter; Karsten Niehaus; Alfred Pühler
Lipopolysaccharide biosynthesis in Xanthomonas campestris pv. campestris: a cluster of 15 genes is involved in the biosynthesis of the LPS O-antigen and the LPS core.
Molecular genetics and genomics : MGG 2001;266(1):79-95.
2001: A Meyer; Alfred Pühler; Karsten Niehaus
The lipopolysaccharides of the phytopathogen Xanthomonas campestris pv. campestris induce an oxidative burst reaction in cell cultures of Nicotiana tabacum.
Planta 2001;213(2):214-22.
2000: Karin Schiene; Alfred Pühler; Karsten Niehaus
Transgenic tobacco plants that express an antisense construct derived from a Medicago sativa cDNA encoding a Rac-related small GTP-binding protein fail to develop necrotic lesions upon elicitor infiltration.
Molecular & general genetics : MGG 2000;263(5):761-70.
1998: Karsten Niehaus; Anke Becker
The role of microbial surface polysaccharides in the Rhizobium-legume interaction.
Sub-cellular biochemistry 1998;29():73-116.
1997: B Kohring; R Baier; Karsten Niehaus; Alfred Pühler; Erwin Flaschel
Production of nodulation factors by Rhizobium meliloti: fermentation, purification and characterization of glycolipids.
Glycoconjugate journal 1997;14(8):963-71.
1997: D Steinmann; R Köplin; Alfred Pühler; Karsten Niehaus
Xanthomonas campestris pv. campestris lpsI and lpsJ genes encoding putative proteins with sequence similarity to the alpha- and beta-subunits of 3-oxoacid CoA-transferases are involved in LPS biosynthesis.
Archives of microbiology 1997;168(6):441-7.
1996: G Kriete; Karsten Niehaus; Andreas M Perlick; Alfred Pühler; I Broer
Male sterility in transgenic tobacco plants induced by tapetum-specific deacetylation of the externally applied non-toxic compound N-acetyl-L-phosphinothricin.
The Plant journal : for cell and molecular biology 1996;9(6):809-18.
1995: Anke Becker; Helge Küster; Karsten Niehaus; Alfred Pühler
Extension of the Rhizobium meliloti succinoglycan biosynthesis gene cluster: identification of the exsA gene encoding an ABC transporter protein, and the exsB gene which probably codes for a regulator of succinoglycan biosynthesis.
Molecular & general genetics : MGG 1995;249(5):487-97.
1995: Anke Becker; Karsten Niehaus; Alfred Pühler
Low-molecular-weight succinoglycan is predominantly produced by Rhizobium meliloti strains carrying a mutated ExoP protein characterized by a periplasmic N-terminal domain and a missing C-terminal domain.
Molecular microbiology 1995;16(2):191-203.
1995: M Keller; A Roxlau; W M Weng; M Schmidt; J Quandt; Karsten Niehaus; D Jording; W Arnold; Alfred Pühler
Molecular analysis of the Rhizobium meliloti mucR gene regulating the biosynthesis of the exopolysaccharides succinoglycan and galactoglucan.
Molecular plant-microbe interactions : MPMI 1995;8(2):267-77.
1991: A M Buendia; B Enenkel; R Köplin; Karsten Niehaus; W Arnold; Alfred Pühler
The Rhizobium meliloti exoZl exoB fragment of megaplasmid 2: ExoB functions as a UDP-glucose 4-epimerase and ExoZ shows homology to NodX of Rhizobium leguminosarum biovar viciae strain TOM.
Molecular microbiology 1991;5(6):1519-30.