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Cydney Nielsen

Research Profile

Genes & Molecular Sequences

Chemicals & Drugs

Anatomy

Embryonic Stem Cells

Activities & Behaviors

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Publications

TOP 3
Cydney B Nielsen; Henriette O'Geen; Ting Wang; Xiaoqin Xu; Hamid Younesy; Joseph F Costello; Peggy J Farnham; Martin Hirst; Andrew R Jackson; Aleksandar Milosavljevic; Steven J M Jones
Spark: a navigational paradigm for genomic data exploration.
Leung Anthony; Amanda G Young; Arjun Bhutkar; Grace X Zheng; Andrew D Bosson; Cydney B Nielsen; Phillip A Sharp
Genome-wide identification of Ago2 binding sites from mouse embryonic stem cells with and without mature microRNAs.
Cydney B Nielsen; Michael Cantor; Inna Dubchak; David Gordon; Ting Wang
Visualizing genomes: techniques and challenges.

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All Publications

2012: Cydney B Nielsen; Henriette O'Geen; Ting Wang; Xiaoqin Xu; Hamid Younesy; Joseph F Costello; Peggy J Farnham; Martin Hirst; Andrew R Jackson; Aleksandar Milosavljevic; Steven J M Jones
Spark: a navigational paradigm for genomic data exploration.
Genome research 2012;22(11):2262-9.
2011: Leung Anthony; Amanda G Young; Arjun Bhutkar; Grace X Zheng; Andrew D Bosson; Cydney B Nielsen; Phillip A Sharp
Genome-wide identification of Ago2 binding sites from mouse embryonic stem cells with and without mature microRNAs.
Nature structural & molecular biology 2011;18(2):237-44.
2010: Cydney B Nielsen; Michael Cantor; Inna Dubchak; David Gordon; Ting Wang
Visualizing genomes: techniques and challenges.
Nature methods 2010;7(3 Suppl):S5-S15.
2010: Seán I O'Donoghue; Anne-Claude Gavin; Nils Gehlenborg; David S Goodsell; Jean-Karim Hériché; Cydney B Nielsen; Chris North; Arthur J Olson; James B Procter; David W Shattuck; Thomas Walter; BANG WONG
Visualizing biological data-now and in the future.
Nature methods 2010;7(3 Suppl):S2-4.
2009: Cydney B Nielsen; Shaun D Jackman; Inanç Birol; Steven J M Jones
ABySS-Explorer: visualizing genome sequence assemblies.
IEEE transactions on visualization and computer graphics 2009;15(6):881-8.
2009: Inanç Birol; Shaun D Jackman; Cydney B Nielsen; Jenny Q Qian; Richard Varhol; Greg Stazyk; Ryan D Morin; Yongjun Zhao; Martin Hirst; Jacqueline E Schein; Doug E Horsman; Joseph Michael Connors; Randy D Gascoyne; Marco A Marra; Steven J M Jones
De novo transcriptome assembly with ABySS.
Bioinformatics (Oxford, England) 2009;25(21):2872-7.
2009: Noah Spies; Cydney B Nielsen; Richard A Padgett; Christopher B Burge
Biased chromatin signatures around polyadenylation sites and exons.
Molecular cell 2009;36(2):245-54.
2007: Cydney B Nielsen; Noam Shomron; Rickard Sandberg; Eran Hornstein; Jacob Kitzman; Christopher B Burge
Determinants of targeting by endogenous and exogenous microRNAs and siRNAs.
RNA (New York, N.Y.) 2007;13(11):1894-910.
2004: Cydney B Nielsen; Brad Friedman; Bruce Birren; Christopher B Burge; James E Galagan
Patterns of intron gain and loss in fungi.
PLoS biology 2004;2(12):e422.
2002: Cydney B Nielsen; Dawn Cooper; Steven M Short; Judith H Myers; Curtis Suttle
DNA polymerase gene sequences indicate western and forest tent caterpillar viruses form a new taxonomic group within baculoviruses.
Journal of invertebrate pathology 2002;81(3):131-47.