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Jeppe Lund Nielsen

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Artur Tomasz Mielczarek; Hien Thi Thu Nguyen; Jeppe Lund Nielsen; Per Halkjær Nielsen
Population dynamics of bacteria involved in enhanced biological phosphorus removal in Danish wastewater treatment plants.
Rikke Kristiansen; Vang Quy Le; Simon Jon McIlroy; Hien Thi Thu Nguyen; Jeppe Lund Nielsen; Kåre Lehmann Nielsen; Steve Petrovski; Aaron Marc Saunders; Robert J Seviour; Reinhard Wimmer; Alexandra Calteau; Per Halkjær Nielsen
A metabolic model for members of the genus Tetrasphaera involved in enhanced biological phosphorus removal.
Ihab Bishara Lolas; Kai Bester; Xijuan Chen; Jeppe Lund Nielsen
Identification of triclosan-degrading bacteria using stable isotope probing, fluorescence in situ hybridization and microautoradiography.

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All Publications

2013: Artur Tomasz Mielczarek; Hien Thi Thu Nguyen; Jeppe Lund Nielsen; Per Halkjær Nielsen
Population dynamics of bacteria involved in enhanced biological phosphorus removal in Danish wastewater treatment plants.
Water research 2013;47(4):1529-44.
2013: Rikke Kristiansen; Vang Quy Le; Simon Jon McIlroy; Hien Thi Thu Nguyen; Jeppe Lund Nielsen; Kåre Lehmann Nielsen; Steve Petrovski; Aaron Marc Saunders; Robert J Seviour; Reinhard Wimmer; Alexandra Calteau; Per Halkjær Nielsen
A metabolic model for members of the genus Tetrasphaera involved in enhanced biological phosphorus removal.
The ISME journal 2013;7(3):543-54.
2012: Ihab Bishara Lolas; Kai Bester; Xijuan Chen; Jeppe Lund Nielsen
Identification of triclosan-degrading bacteria using stable isotope probing, fluorescence in situ hybridization and microautoradiography.
Microbiology (Reading, England) 2012;158(Pt 11):2796-804.
2012: Hien Thi Thu Nguyen; Jeppe Lund Nielsen; Per Halkjaer Nielsen
'Candidatus Halomonas phosphatis', a novel polyphosphate-accumulating organism in full-scale enhanced biological phosphorus removal plants.
Environmental microbiology 2012;14(10):2826-37.
2012: Jeppe Lund Nielsen; Rikke Louise Meyer; Hien Nguyen; Per Halkjær Nielsen
Identification of glucose-fermenting bacteria in a full-scale enhanced biological phosphorus removal plant by stable isotope probing.
Microbiology (Reading, England) 2012;158(Pt 7):1818-25.
2012: Per Halkjær Nielsen; Aaron Marc Saunders; Aviaja Anna Hansen; Poul Larsen; Jeppe Lund Nielsen
Microbial communities involved in enhanced biological phosphorus removal from wastewater--a model system in environmental biotechnology.
Current opinion in biotechnology 2012;23(3):452-9.
2011: Anja Kristiansen; Sabine Lindholst; Josh D Neufeld; Anders Feilberg; Per Halkjaer Nielsen; Jeppe Lund Nielsen
Butyric acid- and dimethyl disulfide-assimilating microorganisms in a biofilter treating air emissions from a livestock facility.
Applied and environmental microbiology 2011;77(24):8595-604.
2011: Niels Christian Møller; Jeppe Lund Nielsen; Lars Østergaard; Jens Raaberg Gade; Lars Bo Andersen
The effect on cardiorespiratory fitness after an 8-week period of commuter cycling--a randomized controlled study in adults.
Preventive medicine 2011;53(3):172-7.
2011: Anja Kristiansen; Kristina Hadulla Pedersen; Per Halkjaer Nielsen; Lars Peter Nielsen; Jeppe Lund Nielsen; Andreas Schramm
Bacterial community structure of a full-scale biofilter treating pig house exhaust air.
Systematic and applied microbiology 2011;34(5):344-52.
2011: Xijuan Chen; Karolina Furgal; Yaling Liu; Ihab Bishara Lolas; Jeppe Lund Nielsen; Kai Bester
Biodegradation of triclosan and formation of methyl-triclosan in activated sludge under aerobic conditions.
Chemosphere 2011;84(4):452-6.
2011: Hien Thi Thu Nguyen; Vang Quy Le; Aviaja Anna Hansen; Jeppe Lund Nielsen; Per Halkjaer Nielsen
High diversity and abundance of putative polyphosphate-accumulating Tetrasphaera-related bacteria in activated sludge systems.
FEMS microbiology ecology 2011;76(2):256-67.
2011: Dominik Marek Dominiak; Jeppe Lund Nielsen; Per Halkjaer Nielsen
Extracellular DNA is abundant and important for microcolony strength in mixed microbial biofilms.
Environmental microbiology 2011;13(3):710-21.
2010: Per Halkjaer Nielsen; Mielczarek Artur; Caroline Kragelund; Jeppe Lund Nielsen; Aaron Marc Saunders; Yunhong Kong; Aviaja Anna Hansen; Jes Vollertsen
A conceptual ecosystem model of microbial communities in enhanced biological phosphorus removal plants.
Water research 2010;44(17):5070-88.
2010: Signe Høgslund; Jeppe Lund Nielsen; Lars Peter Nielsen
Distribution, ecology and molecular identification of Thioploca from Danish brackish water sediments.
FEMS microbiology ecology 2010;73(1):110-20.
2010: Jeppe Lund Nielsen; Caroline Kragelund; Per Halkjaer Nielsen
Ecophysiological analysis of microorganisms in complex microbial systems by combination of fluorescence in situ hybridization with extracellular staining techniques.
Methods in molecular biology (Clifton, N.J.) 2010;599():117-28.
2010: Jeppe Lund Nielsen; Caroline Kragelund; Per Halkjaer Nielsen
Combination of fluorescence in situ hybridization with staining techniques for cell viability and accumulation of PHA and polyP in microorganisms in complex microbial systems.
Methods in molecular biology (Clifton, N.J.) 2010;599():103-16.
2009: Per Halkjaer Nielsen; Caroline Kragelund; Robert J Seviour; Jeppe Lund Nielsen
Identity and ecophysiology of filamentous bacteria in activated sludge.
FEMS microbiology reviews 2009;33(6):969-98.
2009: Signe Høgslund; Niels Peter Revsbech; J Gijs Kuenen; Bo Barker Jørgensen; Victor Ariel Gallardo; Jack van de Vossenberg; Jeppe Lund Nielsen; Lars Holmkvist; Esther T Arning; Lars Peter Nielsen
Physiology and behaviour of marine Thioploca.
The ISME journal 2009;3(6):647-57.
2008: Fernando Morgan-Sagastume; Jeppe Lund Nielsen; Per Halkjaer Nielsen
Substrate-dependent denitrification of abundant probe-defined denitrifying bacteria in activated sludge.
FEMS microbiology ecology 2008;66(2):447-61.
2008: Martin Hesselsoe; Marianne L Bjerring; Kaj Henriksen; Per Loll; Jeppe Lund Nielsen
Method for measuring substrate preferences by individual members of microbial consortia proposed for bioaugmentation.
Biodegradation 2008;19(5):621-33.
2008: Robert J Seviour; Caroline Kragelund; Yunhong Kong; Kathryn L Eales; Jeppe Lund Nielsen; Per Halkjaer Nielsen
Ecophysiology of the Actinobacteria in activated sludge systems.
Antonie van Leeuwenhoek 2008;94(1):21-33.
2008: Poul Larsen; Jeppe Lund Nielsen; Tore C Svendsen; Per Halkjaer Nielsen
Adhesion characteristics of nitrifying bacteria in activated sludge.
Water research 2008;42(10-11):2814-26.
2008: Poul Larsen; Jeppe Lund Nielsen; Daniel E Otzen; Per Halkjaer Nielsen
Amyloid-like adhesins produced by floc-forming and filamentous bacteria in activated sludge.
Applied and environmental microbiology 2008;74(5):1517-26.
2008: Fernando Morgan-Sagastume; Poul Larsen; Jeppe Lund Nielsen; Per Halkjaer Nielsen
Characterization of the loosely attached fraction of activated sludge bacteria.
Water research 2008;42(4-5):843-54.
2008: Poul Larsen; Bo Højris Olesen; Per Halkjaer Nielsen; Jeppe Lund Nielsen
Quantification of lipids and protein in thin biofilms by fluorescence staining.
Biofouling 2008;24(4):241-50.
2007: Yunhong Kong; Yun Xia; Jeppe Lund Nielsen; Per Halkjaer Nielsen
Structure and function of the microbial community in a full-scale enhanced biological phosphorus removal plant.
Microbiology (Reading, England) 2007;153(Pt 12):4061-73.
2007: Poul Larsen; Jeppe Lund Nielsen; Morten Simonsen Dueholm; Ronald B. Wetzel; Daniel E Otzen; Per Halkjaer Nielsen
Amyloid adhesins are abundant in natural biofilms.
Environmental microbiology 2007;9(12):3077-90.
2007: Caroline Kragelund; Zaneta Remesova; Jeppe Lund Nielsen; Trine Rolighed Thomsen; Kathryn L Eales; Robert J Seviour; Jiri Wanner; Per Halkjaer Nielsen
Ecophysiology of mycolic acid-containing Actinobacteria (Mycolata) in activated sludge foams.
FEMS microbiology ecology 2007;61(1):174-84.
2007: Nur Koçberber Kiliç; Jeppe Lund Nielsen; Meral Yüce; Gönül Dönmez
Characterization of a simple bacterial consortium for effective treatment of wastewaters with reactive dyes and Cr(VI).
Chemosphere 2007;67(4):826-31.
2007: Luke C Burow; Yunhong Kong; Jeppe Lund Nielsen; Linda L Blackall; Per H Nielsen
Abundance and ecophysiology of Defluviicoccus spp., glycogen-accumulating organisms in full-scale wastewater treatment processes.
Microbiology (Reading, England) 2007;153(Pt 1):178-85.
2006: Kathryn L Eales; Jeppe Lund Nielsen; Elizabeth M Seviour; Per H Nielsen; Robert J Seviour
The in situ physiology of Skermania piniformis in foams in Australian activated sludge plants.
Environmental microbiology 2006;8(10):1712-20.
2006: Trine Rolighed Thomsen; Linda L Blackall; Marilena Aquino de Muro; Jeppe Lund Nielsen; Per Halkjaer Nielsen
Meganema perideroedes gen. nov., sp. nov., a filamentous alphaproteobacterium from activated sludge.
International journal of systematic and evolutionary microbiology 2006;56(Pt 8):1865-8.
2006: Yunhong Kong; Yun Xia; Jeppe Lund Nielsen; Per Halkjaer Nielsen
Ecophysiology of a group of uncultured Gammaproteobacterial glycogen-accumulating organisms in full-scale enhanced biological phosphorus removal wastewater treatment plants.
Environmental microbiology 2006;8(3):479-89.
2006: Jeppe Lund Nielsen; Cecilie Klausen; Per Halkjaer Nielsen; Michele Burford; Niels O G Jørgensen
Detection of activity among uncultured Actinobacteria in a drinking water reservoir.
FEMS microbiology ecology 2006;55(3):432-8.
2006: Kilian Stoecker; Bernd Bendinger; Björn Schöning; Per Halkjaer Nielsen; Jeppe Lund Nielsen; Christian Baranyi; Elena R Toenshoff; Holger Daims; Michael Wagner
Cohn's Crenothrix is a filamentous methane oxidizer with an unusual methane monooxygenase.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(7):2363-7.
2006: Michael Wagner; Per Halkjaer Nielsen; Alexander Loy; Jeppe Lund Nielsen; Holger Daims
Linking microbial community structure with function: fluorescence in situ hybridization-microautoradiography and isotope arrays.
Current opinion in biotechnology 2006;17(1):83-91.
2006: P Larsen; P S Eriksen; M A Lou; Trine Rolighed Thomsen; Y H Kong; Jeppe Lund Nielsen; Per Halkjaer Nielsen
Floc-forming properties of polyphosphate accumulating organisms in activated sludge.
Water science and technology : a journal of the International Association on Water Pollution Research 2006;54(1):257-65.
2005: Caroline Kragelund; Jeppe Lund Nielsen; Trine Rolighed Thomsen; Per Halkjaer Nielsen
Ecophysiology of the filamentous Alphaproteobacterium Meganema perideroedes in activated sludge.
FEMS microbiology ecology 2005;54(1):111-22.
2005: Armin Gieseke; Jeppe Lund Nielsen; Rudolf Amann; Per Halkjaer Nielsen; Dirk de Beer
In situ substrate conversion and assimilation by nitrifying bacteria in a model biofilm.
Environmental microbiology 2005;7(9):1392-404.
2005: Yunhong Kong; Jeppe Lund Nielsen; Per Halkjaer Nielsen
Identity and ecophysiology of uncultured actinobacterial polyphosphate-accumulating organisms in full-scale enhanced biological phosphorus removal plants.
Applied and environmental microbiology 2005;71(7):4076-85.
2005: Cecilie Klausen; Mette H Nicolaisen; Bjarne W. Strobel; Falk Warnecke; Jeppe Lund Nielsen; Niels O G Jørgensen
Abundance of actinobacteria and production of geosmin and 2-methylisoborneol in Danish streams and fish ponds.
FEMS microbiology ecology 2005;52(2):265-78.
2005: Martin Hesselsoe; Jeppe Lund Nielsen; Peter Roslev; Per Halkjaer Nielsen
Isotope labeling and microautoradiography of active heterotrophic bacteria on the basis of assimilation of 14CO(2).
Applied and environmental microbiology 2005;71(2):646-55.
2005: Jeppe Lund Nielsen; Per Halkjaer Nielsen
Advances in microscopy: microautoradiography of single cells.
Methods in enzymology 2005;397():237-56.
2005: Birthe Venø Kjellerup; Trine Rolighed Thomsen; Jeppe Lund Nielsen; BH Olesen; Bo Frølund; Per Halkjaer Nielsen
Microbial diversity in biofilms from corroding heating systems.
Biofouling 2005;21(1):19-29.
2004: Jeppe Lund Nielsen; Andreas Schramm; Anne E Bernhard; Gerrit J van den Engh; David A Stahl
Flow cytometry-assisted cloning of specific sequence motifs from complex 16S rRNA gene libraries.
Applied and environmental microbiology 2004;70(12):7550-4.
2004: Morten M Klausen; Trine Rolighed Thomsen; Jeppe Lund Nielsen; Lene Haugaard Mikkelsen; Per Halkjaer Nielsen
Variations in microcolony strength of probe-defined bacteria in activated sludge flocs.
FEMS microbiology ecology 2004;50(2):123-32.
2004: Yunhong Kong; Jeppe Lund Nielsen; Per Halkjaer Nielsen
Microautoradiographic study of Rhodocyclus-related polyphosphate-accumulating bacteria in full-scale enhanced biological phosphorus removal plants.
Applied and environmental microbiology 2004;70(9):5383-90.
2004: Trine Rolighed Thomsen; Jeppe Lund Nielsen; Niels Birger Ramsing; Per Halkjaer Nielsen
Micromanipulation and further identification of FISH-labelled microcolonies of a dominant denitrifying bacterium in activated sludge.
Environmental microbiology 2004;6(5):470-9.
2004: Per Halkjaer Nielsen; Trine Rolighed Thomsen; Jeppe Lund Nielsen
Bacterial composition of activated sludge--importance for floc and sludge properties.
Water science and technology : a journal of the International Association on Water Pollution Research 2004;49(10):51-8.
2003: Jeppe Lund Nielsen; Dinna Christensen; Marie Kloppenborg; Per Halkjaer Nielsen
Quantification of cell-specific substrate uptake by probe-defined bacteria under in situ conditions by microautoradiography and fluorescence in situ hybridization.
Environmental microbiology 2003;5(3):202-11.
2003: Birthe Venø Kjellerup; BH Olesen; Jeppe Lund Nielsen; Bo Frølund; S Odum; Per Halkjaer Nielsen
Monitoring and characterisation of bacteria in corroding district heating systems using fluorescence in situ hybridisation and microautoradiography.
Water science and technology : a journal of the International Association on Water Pollution Research 2003;47(5):117-22.
2003: Jeppe Lund Nielsen; Marilena Aquino de Muro; Per Halkjaer Nielsen
Evaluation of the redox dye 5-cyano-2,3-tolyl-tetrazolium chloride for activity studies by simultaneous use of microautoradiography and fluorescence in situ hybridization.
Applied and environmental microbiology 2003;69(1):641-3.
2002: Andreas Schramm; Bernhard M Fuchs; Jeppe Lund Nielsen; Mauro Tonolla; David A Stahl
Fluorescence in situ hybridization of 16S rRNA gene clones (Clone-FISH) for probe validation and screening of clone libraries.
Environmental microbiology 2002;4(11):713-20.
2002: Jeppe Lund Nielsen; Stefan Juretschko; Michael Wagner; Per Halkjaer Nielsen
Abundance and phylogenetic affiliation of iron reducers in activated sludge as assessed by fluorescence in situ hybridization and microautoradiography.
Applied and environmental microbiology 2002;68(9):4629-36.
2002: Trine Rolighed Thomsen; Birthe Venø Kjellerup; Jeppe Lund Nielsen; Philip Hugenholtz; Per Halkjaer Nielsen
In situ studies of the phylogeny and physiology of filamentous bacteria with attached growth.
Environmental microbiology 2002;4(7):383-91.
2002: Per Halkjaer Nielsen; Peter Roslev; Thomas Dueholm; Jeppe Lund Nielsen
Microthrix parvicella, a specialized lipid consumer in anaerobic-aerobic activated sludge plants.
Water science and technology : a journal of the International Association on Water Pollution Research 2002;46(1-2):73-80.
2002: Jeppe Lund Nielsen; Per Halkjaer Nielsen
Quantification of functional groups in activated sludge by microautoradiography.
Water science and technology : a journal of the International Association on Water Pollution Research 2002;46(1-2):389-95.
2002: Jeppe Lund Nielsen; Per Halkjaer Nielsen
Enumeration of acetate-consuming bacteria by microautoradiography under oxygen and nitrate respiring conditions in activated sludge.
Water research 2002;36(2):421-8.
2002: Tsukasa Ito; Jeppe Lund Nielsen; Satoshi Okabe; Yoshimasa Watanabe; Per H Nielsen
Phylogenetic identification and substrate uptake patterns of sulfate-reducing bacteria inhabiting an oxic-anoxic sewer biofilm determined by combining microautoradiography and fluorescent in situ hybridization.
Applied and environmental microbiology 2002;68(1):356-64.
2001: Holger Daims; Jeppe Lund Nielsen; Per Halkjaer Nielsen; Karl-Heinz Schleifer; Michael Wagner
In situ characterization of Nitrospira-like nitrite-oxidizing bacteria active in wastewater treatment plants.
Applied and environmental microbiology 2001;67(11):5273-84.
2001: Jes Vollertsen; A Jahn; Jeppe Lund Nielsen; Thorkild Hvitved-Jacobsen; Per Halkjaer Nielsen
Comparison of methods for determination of microbial biomass in wastewater.
Water research 2001;35(7):1649-58.
2001: Jeppe Lund Nielsen; Lene Haugaard Mikkelsen; Per Halkjaer Nielsen
In situ detection of cell surface hydrophobicity of probe-defined bacteria in activated sludge.
Water science and technology : a journal of the International Association on Water Pollution Research 2001;43(6):97-103.
2000: Per Halkjaer Nielsen; Marilena Aquino de Muro; Jeppe Lund Nielsen
Studies on the in situ physiology of Thiothrix spp. present in activated sludge.
Environmental microbiology 2000;2(4):389-98.
1999: Natuschka Lee; Per Halkjaer Nielsen; K H Andreasen; Stefan Juretschko; Jeppe Lund Nielsen; Karl-Heinz Schleifer; Michael Wagner
Combination of fluorescent in situ hybridization and microautoradiography-a new tool for structure-function analyses in microbial ecology.
Applied and environmental microbiology 1999;65(3):1289-97.