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Rasmus Nielsen

Research Profile

Concepts & Ideas

Occupations

Genetics, Population

Phenomena

Evolution, Molecular

Genes & Molecular Sequences

Physiology

Procedures

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Publications

TOP 3
Yong Wang; Rasmus Nielsen
Estimating population divergence time and phylogeny from single-nucleotide polymorphisms data with outgroup ascertainment bias.
Benjamin M Peter; Emilia Huerta-Sanchez; Rasmus Nielsen
Distinguishing between selective sweeps from standing variation and from a de novo mutation.
Kirk E Lohmueller; Oluf Pedersen; Annelli Sandbaek; Geng Tian; Nicolas Vinckenbosch; Jun Wang; Daniel R Witte; Anders Albrechtsen; Alison F Feder; Niels Grarup; Torben Hansen; Ines Hellmann; Emilia Huerta-Sanchez; Tao Jiang; Torben Jørgensen; Su Yeon Kim; Thorfinn Korneliussen; Torsten Lauritzen; Yingrui Li; Rasmus Nielsen
Natural selection affects multiple aspects of genetic variation at putatively neutral sites across the human genome.

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All Publications

2012: Yong Wang; Rasmus Nielsen
Estimating population divergence time and phylogeny from single-nucleotide polymorphisms data with outgroup ascertainment bias.
Molecular ecology 2012;21(4):974-86.
2012: Benjamin M Peter; Emilia Huerta-Sanchez; Rasmus Nielsen
Distinguishing between selective sweeps from standing variation and from a de novo mutation.
PLoS genetics 2012;8(10):e1003011.
2011: Kirk E Lohmueller; Oluf Pedersen; Annelli Sandbaek; Geng Tian; Nicolas Vinckenbosch; Jun Wang; Daniel R Witte; Anders Albrechtsen; Alison F Feder; Niels Grarup; Torben Hansen; Ines Hellmann; Emilia Huerta-Sanchez; Tao Jiang; Torben Jørgensen; Su Yeon Kim; Thorfinn Korneliussen; Torsten Lauritzen; Yingrui Li; Rasmus Nielsen
Natural selection affects multiple aspects of genetic variation at putatively neutral sites across the human genome.
PLoS genetics 2011;7(10):e1002326.
2011: Ida Moltke; Finn C Nielsen; Anders Albrechtsen; Thomas V O Hansen; Rasmus Nielsen
A method for detecting IBD regions simultaneously in multiple individuals--with applications to disease genetics.
Genome research 2011;21(7):1168-80.
2011: Rasmus Nielsen; Joshua S Paul; Anders Albrechtsen; Yun S Song
Genotype and SNP calling from next-generation sequencing data.
Nature reviews. Genetics 2011;12(6):443-51.
2011: Su Yeon Kim; Thorfinn Korneliussen; Yingrui Li; Kirk E Lohmueller; Anders Albrechtsen; Gitte Andersen; Niels Grarup; Torben Hansen; Tao Jiang; Torben Jorgensen; Oluf Pedersen; Geng Tian; Jun Wang; Daniel R Witte; Rasmus Nielsen
Estimation of allele frequency and association mapping using next-generation sequencing data.
BMC bioinformatics 2011;12():231.
2011: Mason Liang; Rasmus Nielsen
Q&A: who is H. sapiens really, and how do we know?
BMC biology 2011;9():20.
2010: Anders Albrechtsen; Omid Niazi; Rasmus Nielsen
Ascertainment biases in SNP chips affect measures of population divergence.
Molecular biology and evolution 2010;27(11):2534-47.
2010: Anders Albrechtsen; Ida Moltke; Rasmus Nielsen
Natural selection and the distribution of identity-by-descent in the human genome.
Genetics 2010;186(1):295-308.
2010: E Axelsson; Anders Albrechtsen; A P van; L Li; H J Megens; A L J Vereijken; R P M A Crooijmans; M A M Groenen; H Ellegren; Eske Willerslev; Rasmus Nielsen
Segregation distortion in chicken and the evolutionary consequences of female meiotic drive in birds.
Heredity 2010;105(3):290-8.
2010: Su Yeon Kim; Yingrui Li; Yiran Guo; Ruiqiang Li; Johan Holmkvist; Torben Hansen; Oluf Pedersen; Jun Wang; Rasmus Nielsen
Design of association studies with pooled or un-pooled next-generation sequencing data.
Genetic epidemiology 2010;34(5):479-91.
2010: John E Pool; Ines Hellmann; Jeffrey D Jensen; Rasmus Nielsen
Population genetic inference from genomic sequence variation.
Genome research 2010;20(3):291-300.
2010: Rute R da Fonseca; Carolin Kosiol; Tomás Vinar; Adam Siepel; Rasmus Nielsen
Positive selection on apoptosis related genes.
FEBS letters 2010;584(3):469-76.
2009: James Haile; Duane G Froese; Ross D E MacPhee; Richard G Roberts; Lee J Arnold; Alberto V Reyes; Morten Rasmussen; Rasmus Nielsen; Barry W Brook; Simon Robinson; Martina Demuro; M Thomas P Gilbert; Kasper Munch; Jeremy J Austin; Alan Cooper; Ian Barnes; Per Möller; Eske Willerslev
Ancient DNA reveals late survival of mammoth and horse in interior Alaska.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(52):22352-7.
2009: Mette E Steeman; Martin B Hebsgaard; R Ewan Fordyce; Simon Y W Ho; Daniel L Rabosky; Rasmus Nielsen; Carsten Rahbek; Henrik Glenner; Martin V Sørensen; Eske Willerslev
Radiation of extant cetaceans driven by restructuring of the oceans.
Systematic biology 2009;58(6):573-85.
2009: Aida M Andrés; Melissa J Hubisz; Amit Indap; Dara G Torgerson; Jeremiah D Degenhardt; Adam R Boyko; Ryan N Gutenkunst; Thomas J White; Eric D Green; Carlos D Bustamante; Andrew G Clark; Rasmus Nielsen
Targets of balancing selection in the human genome.
Molecular biology and evolution 2009;26(12):2755-64.
2009: Rasmus Nielsen
Adaptionism-30 years after Gould and Lewontin.
Evolution; international journal of organic evolution 2009;63(10):2487-90.
2009: Rasmus Nielsen; Melissa J Hubisz; Ines Hellmann; Dara Torgerson; Aida M Andrés; Anders Albrechtsen; Ryan Gutenkunst; Mark D Adams; Michele Cargill; Adam Boyko; Amit Indap; Carlos Bustamante; andrew clark
Darwinian and demographic forces affecting human protein coding genes.
Genome research 2009;19(5):838-49.
2009: Anders Albrechtsen; Thorfinn Sand Korneliussen; Ida Moltke; Thomas van Overseem Hansen; Omid Niazi; Rasmus Nielsen
Relatedness mapping and tracts of relatedness for genome-wide data in the presence of linkage disequilibrium.
Genetic epidemiology 2009;33(3):266-74.
2009: Rasmus Nielsen; Mark A Beaumont
Statistical inferences in phylogeography.
Molecular ecology 2009;18(6):1034-47.
2009: Anna Ramírez-Soriano; Rasmus Nielsen
Correcting estimators of theta and Tajima's D for ascertainment biases caused by the single-nucleotide polymorphism discovery process.
Genetics 2009;181(2):701-10.
2009: John E Pool; Rasmus Nielsen
Inference of historical changes in migration rate from the lengths of migrant tracts.
Genetics 2009;181(2):711-9.
2009: Weiwei Zhai; Rasmus Nielsen; Montgomery Slatkin
An investigation of the statistical power of neutrality tests based on comparative and population genetic data.
Molecular biology and evolution 2009;26(2):273-83.
2008: Kasper Munch; Wouter Boomsma; Eske Willerslev; Rasmus Nielsen
Fast phylogenetic DNA barcoding.
Philosophical transactions of the Royal Society of London. Series B, Biological sciences 2008;363(1512):3997-4002.
2008: Kasper Munch; Wouter Boomsma; John P Huelsenbeck; Eske Willerslev; Rasmus Nielsen
Statistical assignment of DNA sequences using Bayesian phylogenetics.
Systematic biology 2008;57(5):750-7.
2008: Erik Axelsson; Eske Willerslev; M Thomas P Gilbert; Rasmus Nielsen
The effect of ancient DNA damage on inferences of demographic histories.
Molecular biology and evolution 2008;25(10):2181-7.
2008: John E Pool; Rasmus Nielsen
The impact of founder events on chromosomal variability in multiply mating species.
Molecular biology and evolution 2008;25(8):1728-36.
2008: Ines Hellmann; Yuan Mang; Zhiping Gu; Peter Li; Francisco M De La Vega; andrew clark; Rasmus Nielsen
Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals.
Genome research 2008;18(7):1020-9.
2008: Adam R Boyko; Scott H Williamson; Amit R Indap; Jeremiah Degenhardt; Ryan D Hernandez; Kirk E Lohmueller; Mark D Adams; Steffen Schmidt; John J Sninsky; Shamil R Sunyaev; Thomas J White; Rasmus Nielsen; andrew clark; Carlos Bustamante
Assessing the evolutionary impact of amino acid mutations in the human genome.
PLoS genetics 2008;4(5):e1000083.
2008: Jonathan P Bollback; Thomas L York; Rasmus Nielsen
Estimation of 2Nes from temporal allele frequency data.
Genetics 2008;179(1):497-502.
2008: Ziheng Yang; Rasmus Nielsen
Mutation-selection models of codon substitution and their use to estimate selective strengths on codon usage.
Molecular biology and evolution 2008;25(3):568-79.
2008: Kirk E Lohmueller; Amit R Indap; Steffen Schmidt; Adam R Boyko; Ryan D Hernandez; Melissa J Hubisz; John J Sninsky; Thomas J White; Shamil Sunyaev; Rasmus Nielsen; andrew clark; Carlos Bustamante
Proportionally more deleterious genetic variation in European than in African populations.
Nature 2008;451(7181):994-7.
2008: Carolin Kosiol; Tomás Vinar; Rute R da Fonseca; Melissa J Hubisz; Carlos Bustamante; Rasmus Nielsen; Adam Siepel
Patterns of positive selection in six Mammalian genomes.
PLoS genetics 2008;4(8):e1000144.
2007: Nadia D Singh; Vanessa L Bauer DuMont; Melissa J Hubisz; Rasmus Nielsen; Charles F Aquadro
Patterns of mutation and selection at synonymous sites in Drosophila.
Molecular biology and evolution 2007;24(12):2687-97.
2007: John E Pool; Rasmus Nielsen
Population size changes reshape genomic patterns of diversity.
Evolution; international journal of organic evolution 2007;61(12):3001-6.
2007: Rasmus Nielsen; Ines Hellmann; Melissa J Hubisz; Carlos Bustamante; andrew clark
Recent and ongoing selection in the human genome.
Nature reviews. Genetics 2007;8(11):857-68.
2007: Sarah Stewart Johnson; Martin B Hebsgaard; Torben R Christensen; Mikhail Mastepanov; Rasmus Nielsen; Kasper Munch; Tina B Brand; M Thomas P Gilbert; Maria T Zuber; Michael Bunce; Regin Rønn; David Gilichinsky; Duane G Froese; Eske Willerslev
Ancient bacteria show evidence of DNA repair.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(36):14401-5.
2007: Ana L Caicedo; Scott H Williamson; Ryan D Hernandez; Adam Boyko; Adi Fledel-Alon; Thomas L York; Nicholas R Polato; Kenneth M Olsen; Rasmus Nielsen; Susan R McCouch; Carlos Bustamante; Michael D Purugganan
Genome-wide patterns of nucleotide polymorphism in domesticated rice.
PLoS genetics 2007;3(9):1745-56.
2007: Lise Petersen; Jonathan P Bollback; Matt Dimmic; Melissa J Hubisz; Rasmus Nielsen
Genes under positive selection in Escherichia coli.
Genome research 2007;17(9):1336-43.
2007: Wendy S W Wong; Rasmus Nielsen
Finding cis-regulatory modules in Drosophila using phylogenetic hidden Markov models.
Bioinformatics (Oxford, England) 2007;23(16):2031-7.
2007: Eske Willerslev; Enrico Cappellini; Wouter Boomsma; Rasmus Nielsen; Martin B Hebsgaard; Tina B Brand; Michael Hofreiter; Michael Bunce; Hendrik Poinar; Dorthe Dahl-Jensen; Sigfus Johnsen; Jørgen Peder Steffensen; Ole Bennike; Jean-Luc Schwenninger; Roger Nathan; Simon Armitage; Cees-Jan de Hoog; Vasily Alfimov; Marcus Christl; Juerg Beer; Raimund Muscheler; Joel Barker; Martin Sharp; Kirsty E H Penkman; James Haile; Pierre Taberlet; M Thomas P Gilbert; Antonella Casoli; Elisa Campani; Matthew J Collins
Ancient biomolecules from deep ice cores reveal a forested southern Greenland.
Science (New York, N.Y.) 2007;317(5834):111-4.
2007: Scott H Williamson; Melissa J Hubisz; andrew clark; Bret Payseur; Carlos Bustamante; Rasmus Nielsen
Localizing recent adaptive evolution in the human genome.
PLoS genetics 2007;3(6):e90.
2007: Anders Albrechtsen; Sofie Castella; Gitte Andersen; Torben Hansen; Oluf Pedersen; Rasmus Nielsen
A Bayesian multilocus association method: allowing for higher-order interaction in association studies.
Genetics 2007;176(2):1197-208.
2007: Ryan D Hernandez; Melissa J Hubisz; David A Wheeler; David G Smith; Betsy M Ferguson; Jeffrey Rogers; Lynne Nazareth; Amit Indap; Traci Bourquin; John McPherson; Donna M Muzny; Richard Gibbs; Rasmus Nielsen; Carlos Bustamante
Demographic histories and patterns of linkage disequilibrium in Chinese and Indian rhesus macaques.
Science (New York, N.Y.) 2007;316(5822):240-3.
2007: Luis A Pastene; Mutsuo Goto; Naohisa Kanda; Alexandre N Zerbini; Dan Kerem; Kazuo Watanabe; Yoshitaka Bessho; Masami Hasegawa; Rasmus Nielsen; Finn Larsen; Per J Palsbøll
Radiation and speciation of pelagic organisms during periods of global warming: the case of the common minke whale, Balaenoptera acutorostrata.
Molecular ecology 2007;16(7):1481-95.
2007: James Haile; Richard Holdaway; Karen Oliver; Michael Bunce; M Thomas P Gilbert; Rasmus Nielsen; Kasper Munch; Simon Y W Ho; Beth Shapiro; Eske Willerslev
Ancient DNA chronology within sediment deposits: are paleobiological reconstructions possible and is DNA leaching a factor?
Molecular biology and evolution 2007;24(4):982-9.
2007: James A Shapiro; Wei Huang; Chenhui Zhang; Melissa J Hubisz; Jian Lu; David A Turissini; Shu Fang; Hurng-Yi Wang; Richard R Hudson; Rasmus Nielsen; Zhu Chen; Chung-I Wu
Adaptive genic evolution in the Drosophila genomes.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(7):2271-6.
2007: Thomas L York; Richard Durrett; Rasmus Nielsen
Dependence of paracentric inversion rate on tract length.
BMC bioinformatics 2007;8():115.
2007: Jonas Binladen; M Thomas P Gilbert; Jonathan P Bollback; Frank Panitz; Christian Bendixen; Rasmus Nielsen; Eske Willerslev
The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing.
PloS one 2007;2(2):e197.
2007: Rasmus Nielsen; Vanessa L Bauer DuMont; Melissa J Hubisz; Charles F Aquadro
Maximum likelihood estimation of ancestral codon usage bias parameters in Drosophila.
Molecular biology and evolution 2007;24(1):228-35.
2006: K K Nightingale; K Lyles; M Ayodele; P Jalan; Rasmus Nielsen; Martin Wiedmann
Novel method to identify source-associated phylogenetic clustering shows that Listeria monocytogenes includes niche-adapted clonal groups with distinct ecological preferences.
Journal of clinical microbiology 2006;44(10):3742-51.
2006: Asger Hobolth; Rasmus Nielsen; Ying Wang; Feinan Wu; Steven D Tanksley
CpG + CpNpG analysis of protein-coding sequences from tomato.
Molecular biology and evolution 2006;23(6):1318-23.
2006: Rasmus Nielsen
Evolution. Why sex?
Science (New York, N.Y.) 2006;311(5763):960-1.
2006: Rasmus Nielsen; Mikhail Matz
Statistical approaches for DNA barcoding.
Systematic biology 2006;55(1):162-9.
2006: Wendy S W Wong; Raazesh Sainudiin; Rasmus Nielsen
Identification of physicochemical selective pressure on protein encoding nucleotide sequences.
BMC bioinformatics 2006;7():148.
2005: Y Wang; Rutger Van der Hoeven; Rasmus Nielsen; Lukas Mueller; Steven D Tanksley
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2005;112(1):72-84.
2005: Rasmus Nielsen; Scott Williamson; Yuseob Kim; Melissa J Hubisz; andrew clark; Carlos Bustamante
Genomic scans for selective sweeps using SNP data.
Genome research 2005;15(11):1566-75.
2005: andrew clark; Melissa J Hubisz; Carlos Bustamante; Scott H Williamson; Rasmus Nielsen
Ascertainment bias in studies of human genome-wide polymorphism.
Genome research 2005;15(11):1496-502.
2005: Carlos Bustamante; Adi Fledel-Alon; Scott Williamson; Rasmus Nielsen; Melissa Todd Hubisz; Stephen Glanowski; David M Tanenbaum; Thomas J White; John J Sninsky; Ryan D Hernandez; Daniel Civello; Mark D Adams; Michele Cargill; andrew clark
Natural selection on protein-coding genes in the human genome.
Nature 2005;437(7062):1153-7.
2005: Rasmus Nielsen
Demography: peopling the Americas.
European journal of human genetics : EJHG 2005;13(10):1100-1.
2005: Matthew W Dimmic; Melissa J Hubisz; Carlos Bustamante; Rasmus Nielsen
Detecting coevolving amino acid sites using Bayesian mutational mapping.
Bioinformatics (Oxford, England) 2005;21 Suppl 1():i126-35.
2005: Rasmus Nielsen; Carlos Bustamante; andrew clark; Stephen Glanowski; Timothy B Sackton; Melissa J Hubisz; Adi Fledel-Alon; David M Tanenbaum; Daniel Civello; Thomas J White; John J Sninsky; Mark D Adams; Michele Cargill
A scan for positively selected genes in the genomes of humans and chimpanzees.
PLoS biology 2005;3(6):e170.
2005: Scott H Williamson; Ryan Hernandez; Adi Fledel-Alon; Lan Zhu; Rasmus Nielsen; Carlos Bustamante
Simultaneous inference of selection and population growth from patterns of variation in the human genome.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(22):7882-7.
2005: Thomas L York; Richard Durrett; Steven D Tanksley; Rasmus Nielsen
Bayesian and maximum likelihood estimation of genetic maps.
Genetical research 2005;85(2):159-68.
2005: Raazesh Sainudiin; Wendy Shuk Wan Wong; Krithika Yogeeswaran; June B Nasrallah; Ziheng Yang; Rasmus Nielsen
Detecting site-specific physicochemical selective pressures: applications to the Class I HLA of the human major histocompatibility complex and the SRK of the plant sporophytic self-incompatibility system.
Journal of molecular evolution 2005;60(3):315-26.
2005: Rasmus Nielsen; Melissa J Hubisz
Evolutionary genomics: detecting selection needs comparative data.
Nature 2005;433(7023):E6; discussion E7-8.
2005: Rasmus Nielsen
Molecular signatures of natural selection.
Annual review of genetics 2005;39():197-218.
2004: Richard W Jobson; Rasmus Nielsen; Liisa Laakkonen; Mårten Wikström; Victor A Albert
Adaptive evolution of cytochrome c oxidase: Infrastructure for a carnivorous plant radiation.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(52):18064-8.
2004: Rasmus Nielsen; Melissa J Hubisz; andrew clark
Reconstituting the frequency spectrum of ascertained single-nucleotide polymorphism data.
Genetics 2004;168(4):2373-82.
2004: Wendy S W Wong; Ziheng Yang; Nick Goldman; Rasmus Nielsen
Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites.
Genetics 2004;168(2):1041-51.
2004: Raazesh Sainudiin; Richard Durrett; Charles F Aquadro; Rasmus Nielsen
Microsatellite mutation models: insights from a comparison of humans and chimpanzees.
Genetics 2004;168(1):383-95.
2004: Yuseob Kim; Rasmus Nielsen
Linkage disequilibrium as a signature of selective sweeps.
Genetics 2004;167(3):1513-24.
2004: Wendy S W Wong; Rasmus Nielsen
Detecting selection in noncoding regions of nucleotide sequences.
Genetics 2004;167(2):949-58.
2004: Rasmus Nielsen
Population genetic analysis of ascertained SNP data.
Human genomics 2004;1(3):218-24.
2004: Per J Palsbøll; Martine Bérubé; Alex Aguilar; Giuseppe Notarbartolo-Di-Sciara; Rasmus Nielsen
Discerning between recurrent gene flow and recent divergence under a finite-site mutation model applied to North Atlantic and Mediterranean Sea fin whale (Balaenoptera physalus) populations.
Evolution; international journal of organic evolution 2004;58(3):670-5.
2004: Richard Durrett; Rasmus Nielsen; Thomas L York
Bayesian estimation of genomic distance.
Genetics 2004;166(1):621-9.
2003: andrew clark; Stephen Glanowski; Rasmus Nielsen; Paul D Thomas; Anish Kejariwal; Melissa A Todd; David M Tanenbaum; Daniel Civello; Fu Lu; Brian Murphy; Steve Ferriera; Gary Wang; Xianqgun Zheng; Thomas J White; John J Sninsky; Mark D Adams; Michele Cargill
Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios.
Science (New York, N.Y.) 2003;302(5652):1960-3.
2003: Rasmus Nielsen; David R Tarpy; H Kern Reeve
Estimating effective paternity number in social insects and the effective number of alleles in a population.
Molecular ecology 2003;12(11):3157-64.
2003: andrew clark; Rasmus Nielsen; James Signorovitch; Tara C Matise; Stephen Glanowski; Jeremy Heil; Emily S Winn-Deen; Arthur L Holden; Eric Lai
Linkage disequilibrium and inference of ancestral recombination in 538 single-nucleotide polymorphism clusters across the human genome.
American journal of human genetics 2003;73(2):285-300.
2003: Rasmus Nielsen; Ziheng Yang
Estimating the distribution of selection coefficients from phylogenetic data with applications to mitochondrial and viral DNA.
Molecular biology and evolution 2003;20(8):1231-9.
2003: Rasmus Nielsen; James Signorovitch
Correcting for ascertainment biases when analyzing SNP data: applications to the estimation of linkage disequilibrium.
Theoretical population biology 2003;63(3):245-55.
2003: John P Huelsenbeck; Rasmus Nielsen; Jonathan P Bollback
Stochastic mapping of morphological characters.
Systematic biology 2003;52(2):131-58.
2003: Carlos Bustamante; Rasmus Nielsen; Daniel L Hartl
Maximum likelihood and Bayesian methods for estimating the distribution of selective effects among classes of mutations using DNA polymorphism data.
Theoretical population biology 2003;63(2):91-103.
2003: andrew clark; Stephen Glanowski; Rasmus Nielsen; P Thomas; Anish Kejariwal; M J Todd; David M Tanenbaum; Daniel Civello; F Lu; B Murphy; Steve Ferriera; Gaofeng Wang; X Zheng; Thomas J White; John J Sninsky; Mark D Adams; Michele Cargill
Positive selection in the human genome inferred from human-chimp-mouse orthologous gene alignments.
Cold Spring Harbor symposia on quantitative biology 2003;68():471-7.
2002: Steven Cai; Dirce Yorika Kabuki; Arnaldo Yoshiteru Kuaye; Theresa Gina Cargioli; Michael S Chung; Rasmus Nielsen; Martin Wiedmann
Rational design of DNA sequence-based strategies for subtyping Listeria monocytogenes.
Journal of clinical microbiology 2002;40(9):3319-25.
2002: Carlos Bustamante; Rasmus Nielsen; Stanley A Sawyer; Kenneth M Olsen; Michael D Purugganan; Daniel L Hartl
The cost of inbreeding in Arabidopsis.
Nature 2002;416(6880):531-4.
2002: James Signorovitch; Rasmus Nielsen
PATRI-paternity inference using genetic data.
Bioinformatics (Oxford, England) 2002;18(2):341-2.
2002: Thomas L York; Richard Durrett; Rasmus Nielsen
Bayesian estimation of the number of inversions in the history of two chromosomes.
Journal of computational biology : a journal of computational molecular cell biology 2002;9(6):805-18.
2002: Carlos Bustamante; Rasmus Nielsen; Daniel L Hartl
A maximum likelihood method for analyzing pseudogene evolution: implications for silent site evolution in humans and rodents.
Molecular biology and evolution 2002;19(1):110-7.
2001: John P Huelsenbeck; Fredrik Ronquist; Rasmus Nielsen; Jonathan P Bollback
Bayesian inference of phylogeny and its impact on evolutionary biology.
Science (New York, N.Y.) 2001;294(5550):2310-4.
2001: John Wakeley; Rasmus Nielsen; S N Liu-Cordero; Kristin G Ardlie
The discovery of single-nucleotide polymorphisms--and inferences about human demographic history.
American journal of human genetics 2001;69(6):1332-47.
2001: Rasmus Nielsen
Mutations as missing data: inferences on the ages and distributions of nonsynonymous and synonymous mutations.
Genetics 2001;159(1):401-11.
2001: Rasmus Nielsen; John Wakeley
Distinguishing migration from isolation: a Markov chain Monte Carlo approach.
Genetics 2001;158(2):885-96.
2001: Rasmus Nielsen; DK Mattila; PJ Clapham; Per J Palsbøll
Statistical approaches to paternity analysis in natural populations and applications to the North Atlantic humpback whale.
Genetics 2001;157(4):1673-82.
2000: Rasmus Nielsen
Estimation of population parameters and recombination rates from single nucleotide polymorphisms.
Genetics 2000;154(2):931-42.
1999: Rasmus Nielsen; Daniel M Weinreich
The age of nonsynonymous and synonymous mutations in animal mtDNA and implications for the mildly deleterious theory.
Genetics 1999;153(1):497-506.
1999: John P Huelsenbeck; Rasmus Nielsen
Effect of nonindependent substitution on phylogenetic accuracy.
Systematic biology 1999;48(2):317-28.