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Avinoam Ben-Shaul

Research Profile

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Anatomy

Lipid Bilayers

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Computer Simulation

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Chemicals & Drugs

Physiology

Membrane Fluidity

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Publications

TOP 3
Yinghao Wu; Barry Honig; Avinoam Ben-Shaul
Theory and simulations of adhesion receptor dimerization on membrane surfaces.
Li Tai Fang; William M Gelbart; Avinoam Ben-Shaul
The size of RNA as an ideal branched polymer.
Yinghao Wu; Avinoam Ben-Shaul; Lawrence Shapiro; Jeremie Vendome; Barry Honig
Transforming binding affinities from three dimensions to two with application to cadherin clustering.

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All Publications

2013: Yinghao Wu; Barry Honig; Avinoam Ben-Shaul
Theory and simulations of adhesion receptor dimerization on membrane surfaces.
Biophysical journal 2013;104(6):1221-9.
2011: Li Tai Fang; William M Gelbart; Avinoam Ben-Shaul
The size of RNA as an ideal branched polymer.
The Journal of chemical physics 2011;135(15):155105.
2011: Yinghao Wu; Avinoam Ben-Shaul; Lawrence Shapiro; Jeremie Vendome; Barry Honig
Transforming binding affinities from three dimensions to two with application to cadherin clustering.
Nature 2011;475(7357):510-3.
2011: Li Tai Fang; Aron M Yoffe; William M Gelbart; Avinoam Ben-Shaul
A sequential folding model predicts length-independent secondary structure properties of long ssRNA.
The journal of physical chemistry. B 2011;115(12):3193-9.
2011: Oliver J Harrison; Xiangshu Jin; Soonjin Hong; Fabiana Bahna; Goran Ahlsen; Julia Brasch; Yinghao Wu; Jeremie Vendome; Klara Felsovalyi; Cheri M Hampton; Regina B Troyanovsky; Avinoam Ben-Shaul; Joachim Frank; Sergey M Troyanovsky; Lawrence Shapiro; Barry Honig
The extracellular architecture of adherens junctions revealed by crystal structures of type I cadherins.
Structure (London, England : 1993) 2011;19(2):244-56.
2011: Aron M Yoffe; Peter Prinsen; William M Gelbart; Avinoam Ben-Shaul
The ends of a large RNA molecule are necessarily close.
Nucleic acids research 2011;39(1):292-9.
2010: Yinghao Wu; Xiangshu Jin; Oliver Harrison; Lawrence Shapiro; Barry H Honig; Avinoam Ben-Shaul
Cooperativity between trans and cis interactions in cadherin-mediated junction formation.
Proceedings of the National Academy of Sciences of the United States of America 2010;107(41):17592-7.
2009: Yifat Brill-Karniely; Yaron Ideses; Anne Bernheim-Groswasser; Avinoam Ben-Shaul
From branched networks of actin filaments to bundles.
Chemphyschem : a European journal of chemical physics and physical chemistry 2009;10(16):2818-27.
2009: P Katsamba; K Carroll; G Ahlsen; Fabiana Bahna; J Vendome; Shoshana Posy; M Rajebhosale; S Price; Thomas M Jessell; Avinoam Ben-Shaul; Lawrence Shapiro; Barry Honig
Linking molecular affinity and cellular specificity in cadherin-mediated adhesion.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(28):11594-9.
2008: Aron M Yoffe; Peter Prinsen; Ajaykumar Gopal; Charles M Knobler; William M Gelbart; Avinoam Ben-Shaul
Predicting the sizes of large RNA molecules.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(42):16153-8.
2008: Shelly Tzlil; Diana Murray; Avinoam Ben-Shaul
The "electrostatic-switch" mechanism: Monte Carlo study of MARCKS-membrane interaction.
Biophysical journal 2008;95(4):1745-57.
2008: Assaf Zemel; Avinoam Ben-Shaul; Sylvio May
Modulation of the spontaneous curvature and bending rigidity of lipid membranes by interfacially adsorbed amphipathic peptides.
The journal of physical chemistry. B 2008;112(23):6988-96.
2008: Vladimir Teif; Daniel Harries; Dmitri Y Lando; Avinoam Ben-Shaul
Matrix formalism for site-specific binding of unstructured proteins to multicomponent lipid membranes.
Journal of peptide science : an official publication of the European Peptide Society 2008;14(4):368-73.
2008: Yaron Ideses; Yifat Brill-Karniely; Lior Haviv; Avinoam Ben-Shaul; Anne Bernheim-Groswasser
Arp2/3 branched actin network mediates filopodia-like bundles formation in vitro.
PloS one 2008;3(9):e3297.
2006: Lior Haviv; Yifat Brill-Karniely; Rachel Mahaffy; Frederic Backouche; Avinoam Ben-Shaul; Thomas D Pollard; Anne Bernheim-Groswasser
Reconstitution of the transition from lamellipodium to filopodium in a membrane-free system.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(13):4906-11.
2005: Shelly Tzlil; Avinoam Ben-Shaul
Flexible charged macromolecules on mixed fluid lipid membranes: theory and Monte Carlo simulations.
Biophysical journal 2005;89(5):2972-87.
2005: Chien Peter Chen; Shoshana Posy; Avinoam Ben-Shaul; Lawrence Shapiro; Barry Honig
Specificity of cell-cell adhesion by classical cadherins: Critical role for low-affinity dimerization through beta-strand swapping.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(24):8531-6.
2005: Assaf Zemel; Avinoam Ben-Shaul; Sylvio May
Perturbation of a lipid membrane by amphipathic peptides and its role in pore formation.
European biophysics journal : EBJ 2005;34(3):230-42.
2005: Emmanuel C Mbamala; Avinoam Ben-Shaul; Sylvio May
Domain formation induced by the adsorption of charged proteins on mixed lipid membranes.
Biophysical journal 2005;88(3):1702-14.
2004: Sylvio May; Yonathan Kozlovsky; Avinoam Ben-Shaul; Michael M Kozlov
Tilt modulus of a lipid monolayer.
The European physical journal. E, Soft matter 2004;14(3):299-308.
2004: Assaf Zemel; Avinoam Ben-Shaul; Sylvio May
Membrane perturbation induced by interfacially adsorbed peptides.
Biophysical journal 2004;86(6):3607-19.
2004: Shelly Tzlil; Markus Deserno; William M Gelbart; Avinoam Ben-Shaul
A statistical-thermodynamic model of viral budding.
Biophysical journal 2004;86(4):2037-48.
2004: Sylvio May; Avinoam Ben-Shaul
Modeling of cationic lipid-DNA complexes.
Current medicinal chemistry 2004;11(2):151-67.
2003: Amado Cordova; Markus Deserno; William M Gelbart; Avinoam Ben-Shaul
Osmotic shock and the strength of viral capsids.
Biophysical journal 2003;85(1):70-4.
2003: Assaf Zemel; Deborah R Fattal; Avinoam Ben-Shaul
Energetics and self-assembly of amphipathic peptide pores in lipid membranes.
Biophysical journal 2003;84(4):2242-55.
2003: Shelly Tzlil; James T Kindt; William M Gelbart; Avinoam Ben-Shaul
Forces and pressures in DNA packaging and release from viral capsids.
Biophysical journal 2003;84(3):1616-27.
2002: Sylvio May; Daniel Harries; Avinoam Ben-Shaul
Macroion-induced compositional instability of binary fluid membranes.
Physical review letters 2002;89(26):268102.
2001: J Kindt; Shelly Tzlil; Avinoam Ben-Shaul; William M Gelbart
DNA packaging and ejection forces in bacteriophage.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(24):13671-4.
2000: Sylvio May; Daniel Harries; Avinoam Ben-Shaul
Lipid demixing and protein-protein interactions in the adsorption of charged proteins on mixed membranes.
Biophysical journal 2000;79(4):1747-60.
2000: Sylvio May; Daniel Harries; Avinoam Ben-Shaul
The phase behavior of cationic lipid-DNA complexes.
Biophysical journal 2000;78(4):1681-97.
1999: Sylvio May; Avinoam Ben-Shaul
Molecular theory of lipid-protein interaction and the Lalpha-HII transition.
Biophysical journal 1999;76(2):751-67.
1998: Daniel Harries; Sylvio May; William M Gelbart; Avinoam Ben-Shaul
Structure, stability, and thermodynamics of lamellar DNA-lipid complexes.
Biophysical journal 1998;75(1):159-73.
1997: Sylvio May; Avinoam Ben-Shaul
DNA-lipid complexes: stability of honeycomb-like and spaghetti-like structures.
Biophysical journal 1997;73(5):2427-40.
1994: D R Fattal; Avinoam Ben-Shaul
Mean-field calculations of chain packing and conformational statistics in lipid bilayers: comparison with experiments and molecular dynamics studies.
Biophysical journal 1994;67(3):985-95.
1993: D R Fattal; Avinoam Ben-Shaul
A molecular model for lipid-protein interaction in membranes: the role of hydrophobic mismatch.
Biophysical journal 1993;65(5):1795-809.
1984: Avinoam Ben-Shaul; I Szleifer; William M Gelbart
Statistical thermodynamics of amphiphile chains in micelles.
Proceedings of the National Academy of Sciences of the United States of America 1984;81(14):4601-5.