Preview
Sign-in for full Details 
Sign-in free and Explore the Exciting World of BiomedExperts:
- Over 1.500.000 Profiles
- More than 1.800 Organizations worldwide
- State of the Art Network Visualizations
- Manage your own Profile
- Locate Experts in your Country/Region
- Locate Experts in your 1. and 2. Level Network
- Connect to Experts Worldwide
NetworkView
William Stafford Noble
This is a preview profile on BiomedExperts - the first literature-based scientific social network. It brings the right researchers
together and allows them to collaborate online. Collexis and Dell provide the BiomedExperts network of +1.5 Million pre-calculated profiles
free of charge to researchers worldwide.
Research Profile (preview)
Concepts & Ideas
Activities & Behaviors
Occupations
Physiology
Procedures
Chemicals & Drugs
Devices
Genes & Molecular Sequences
Living Beings
Sign-in to see full Profile
Network (preview)
10
Stamatoyannopoulos, John
8
Weston, Jason
8
MacCoss, Michael
8
Pavlidis, Paul
8
Leslie, Christina
6
Käll, Lukas
5
Thurman, Robert
5
Eskin, Eleazar
4
Bailey, Timothy
4
Ben-Hur, Asa
4
Humbert, Richard
4
Klammer, Aaron
3
Lewis, Darrin
3
Payan, Donald
3
Kuang, Rui
Sign-in to see all Coauthors
Publications
Sign-in to see all Publications
Sign in free and see...
Visualized networks:
See your personal network in
sophisticated graphical views
GeoTargeted Searches:
Locate experts around the world
and connect with global collaborators
Research Profiles:
See the visualized research activity
of experts around the globe
Sign-in to see more
Geonetwork of William Stafford Noble (preview)
Cities where this author has publications
Cities where co-authors of this author have publications
Sign-in to see more
All Publications
-
2009: Noble William Stafford
A quick guide to organizing computational biology projects.
PLoS computational biology 2009;5(7):e1000424.
-
2009: Mann Tobias; Humbert Richard; Dorschner Michael; Stamatoyannopoulos John; Noble William Stafford
A thermodynamic approach to PCR primer design.
Nucleic acids research 2009;37(13):e95.
-
2009: Spivak Marina; Weston Jason; Bottou Léon; Käll Lukas; Noble William Stafford
Improvements to the percolator algorithm for Peptide identification from shotgun proteomics data sets.
Journal of proteome research 2009;8(7):3737-45.
-
2009: Hawkins John; Grant Charles; Noble William Stafford; Bailey Timothy L
Assessing phylogenetic motif models for predicting transcription factor binding sites.
Bioinformatics (Oxford, England) 2009;25(12):i339-47.
-
2009: Klammer Aaron A; Park Christopher Y; Noble William Stafford
Statistical calibration of the SEQUEST XCorr function.
Journal of proteome research 2009;8(4):2106-13.
-
2009: Käll Lukas; Storey John D; Noble William Stafford
QVALITY: non-parametric estimation of q-values and posterior error probabilities.
Bioinformatics (Oxford, England) 2009;25(7):964-6.
-
2009: Melvin Iain; Weston Jason; Leslie Christina; Noble William Stafford
RANKPROP: a web server for protein remote homology detection.
Bioinformatics (Oxford, England) 2009;25(1):121-2.
-
2008: Reynolds Sheila M; Käll Lukas; Riffle Michael E; Bilmes Jeff A; Noble William Stafford
Transmembrane topology and signal peptide prediction using dynamic bayesian networks.
PLoS computational biology 2008;4(11):e1000213.
-
2008: Merrihew Gennifer E; Davis Colleen; Ewing Brent; Williams Gary; Käll Lukas; Frewen Barbara E; Noble William Stafford; Green Phil; Thomas James H; MacCoss Michael J
Use of shotgun proteomics for the identification, confirmation, and correction of C. elegans gene annotations.
Genome research 2008;18(10):1660-9.
-
2008: Lian Heng; Thompson William A; Thurman Robert; Stamatoyannopoulos John A; Noble William Stafford; Lawrence Charles E
Automated mapping of large-scale chromatin structure in ENCODE.
Bioinformatics (Oxford, England) 2008;24(17):1911-6.
-
2008: Käll Lukas; Storey John D; Noble William Stafford
Non-parametric estimation of posterior error probabilities associated with peptides identified by tandem mass spectrometry.
Bioinformatics (Oxford, England) 2008;24(16):i42-8.
-
2008: Yosef Nir; Sharan Roded; Noble William Stafford
Improved network-based identification of protein orthologs.
Bioinformatics (Oxford, England) 2008;24(16):i200-6.
-
2008: Klammer Aaron A; Reynolds Sheila M; Bilmes Jeff A; MacCoss Michael J; Noble William Stafford
Modeling peptide fragmentation with dynamic Bayesian networks for peptide identification.
Bioinformatics (Oxford, England) 2008;24(13):i348-56.
-
2008: Qiu Jian; Sheffler Will; Baker David; Noble William Stafford
Ranking predicted protein structures with support vector regression.
Proteins 2008;71(3):1175-82.
-
2008: Qiu Jian; Noble William Stafford
Predicting co-complexed protein pairs from heterogeneous data.
PLoS computational biology 2008;4(4):e1000054.
-
2008: Käll Lukas; Storey John D; MacCoss Michael J; Noble William Stafford
Assigning significance to peptides identified by tandem mass spectrometry using decoy databases.
Journal of proteome research 2008;7(1):29-34.
-
2008: Käll Lukas; Storey John D; MacCoss Michael J; Noble William Stafford
Posterior error probabilities and false discovery rates: two sides of the same coin.
Journal of proteome research 2008;7(1):40-4.
-
2008: Gupta Shobhit; Dennis Jonathan; Thurman Robert E; Kingston Robert; Stamatoyannopoulos John A; Noble William Stafford
Predicting human nucleosome occupancy from primary sequence.
PLoS computational biology 2008;4(8):e1000134.
-
2008: Obozinski Guillaume; Lanckriet Gert; Grant Charles; Jordan Michael I; Noble William Stafford
Consistent probabilistic outputs for protein function prediction.
Genome biology 2008;9 Suppl 1():S6.
-
2008: Thurman R E; Noble W S; Stamatoyannopoulos J A
Multi-scale correlations in continuous genomic data.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2008;():201-15.
-
2007: Käll Lukas; Canterbury Jesse D; Weston Jason; Noble William Stafford; MacCoss Michael J
Semi-supervised learning for peptide identification from shotgun proteomics datasets.
Nature methods 2007;4(11):923-5.
-
2007: Klammer Aaron A; Yi Xianhua; MacCoss Michael J; Noble William Stafford
Improving tandem mass spectrum identification using peptide retention time prediction across diverse chromatography conditions.
Analytical chemistry 2007;79(16):6111-8.
-
2007: Peckham Heather E; Thurman Robert E; Fu Yutao; Stamatoyannopoulos John A; Noble William Stafford; Struhl Kevin; Weng Zhiping
Nucleosome positioning signals in genomic DNA.
Genome research 2007;17(8):1170-7.
-
2007: Asthana Saurabh; Noble William S; Kryukov Gregory; Grant Charles E; Sunyaev Shamil; Stamatoyannopoulos John A
Widely distributed noncoding purifying selection in the human genome.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(30):12410-5.
-
2007: Thurman Robert E; Day Nathan; Noble William S; Stamatoyannopoulos John A
Identification of higher-order functional domains in the human ENCODE regions.
Genome research 2007;17(6):917-27.
-
2007: Day Nathan; Hemmaplardh Andrew; Thurman Robert E; Stamatoyannopoulos John A; Noble William S
Unsupervised segmentation of continuous genomic data.
Bioinformatics (Oxford, England) 2007;23(11):1424-6.
-
2007: Qiu Jian; Hue Martial; Ben-Hur Asa; Vert Jean-Philippe; Noble William Stafford
A structural alignment kernel for protein structures.
Bioinformatics (Oxford, England) 2007;23(9):1090-8.
-
2007: Vert Jean-Philippe; Qiu Jian; Noble William S
A new pairwise kernel for biological network inference with support vector machines.
BMC bioinformatics 2007;8 Suppl 10():S8.
-
2007: Gupta Shobhit; Stamatoyannopoulos John A; Bailey Timothy L; Noble William Stafford
Quantifying similarity between motifs.
Genome biology 2007;8(2):R24.
-
2006: Noble William S
What is a support vector machine?
Nature biotechnology 2006;24(12):1565-7.
-
2006: Lewis Darrin P; Jebara Tony; Noble William Stafford
Support vector machine learning from heterogeneous data: an empirical analysis using protein sequence and structure.
Bioinformatics (Oxford, England) 2006;22(22):2753-60.
-
2006: Pramila Tata; Wu Wei; Miles Shawna; Noble William Stafford; Breeden Linda L
The Forkhead transcription factor Hcm1 regulates chromosome segregation genes and fills the S-phase gap in the transcriptional circuitry of the cell cycle.
Genes & development 2006;20(16):2266-78.
-
2006: Frewen Barbara E; Merrihew Gennifer E; Wu Christine C; Noble William Stafford; MacCoss Michael J
Analysis of peptide MS/MS spectra from large-scale proteomics experiments using spectrum libraries.
Analytical chemistry 2006;78(16):5678-84.
-
2006: Mann Tobias P; Noble William Stafford
Efficient identification of DNA hybridization partners in a sequence database.
Bioinformatics (Oxford, England) 2006;22(14):e350-8.
-
2006: Sabo Peter J; Kuehn Michael S; Thurman Robert; Johnson Brett E; Johnson Ericka M; Cao Hua; Yu Man; Rosenzweig Elizabeth; Goldy Jeff; Haydock Andrew; Weaver Molly; Shafer Anthony; Lee Kristin; Neri Fidencio; Humbert Richard; Singer Michael A; Richmond Todd A; Dorschner Michael O; McArthur Michael; Hawrylycz Michael; Green Roland D; Navas Patrick A; Noble William S; Stamatoyannopoulos John A
Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays.
Nature methods 2006;3(7):511-8.
-
2006: Mann Tobias P; Humbert Richard; Stamatoyannopolous John A; Noble William Stafford
Automated validation of polymerase chain reaction amplicon melting curves.
Journal of bioinformatics and computational biology 2006;4(2):299-315.
-
2006: Ben-Hur Asa; Noble William Stafford
Choosing negative examples for the prediction of protein-protein interactions.
BMC bioinformatics 2006;7 Suppl 1():S2.
-
2006: Weston Jason; Kuang Rui; Leslie Christina; Noble William Stafford
Protein ranking by semi-supervised network propagation.
BMC bioinformatics 2006;7 Suppl 1():S10.
-
2005: Noble William S; Kuang Rui; Leslie Christina; Weston Jason
Identifying remote protein homologs by network propagation.
The FEBS journal 2005;272(20):5119-28.
-
2005: Kuang Rui; Weston Jason; Noble William Stafford; Leslie Christina
Motif-based protein ranking by network propagation.
Bioinformatics (Oxford, England) 2005;21(19):3711-8.
-
2005: Miller John P; Lo Russell S; Ben-Hur Asa; Desmarais Cynthia; Stagljar Igor; Noble William Stafford; Fields Stanley
Large-scale identification of yeast integral membrane protein interactions.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(34):12123-8.
-
2005: Weston Jason; Leslie Christina; Ie Eugene; Zhou Dengyong; Elisseeff Andre; Noble William Stafford
Semi-supervised protein classification using cluster kernels.
Bioinformatics (Oxford, England) 2005;21(15):3241-7.
-
2005: Ben-Hur Asa; Noble William Stafford
Kernel methods for predicting protein-protein interactions.
Bioinformatics (Oxford, England) 2005;21 Suppl 1():i38-46.
-
2005: Noble William Stafford; Kuehn Scott; Thurman Robert; Yu Man; Stamatoyannopoulos John
Predicting the in vivo signature of human gene regulatory sequences.
Bioinformatics (Oxford, England) 2005;21 Suppl 1():i338-43.
-
2005: Tompa Martin; Li Nan; Bailey Timothy L; Church George M; De Moor Bart; Eskin Eleazar; Favorov Alexander V; Frith Martin C; Fu Yutao; Kent W James; Makeev Vsevolod J; Mironov Andrei A; Noble William Stafford; Pavesi Giulio; Pesole Graziano; Régnier Mireille; Simonis Nicolas; Sinha Saurabh; Thijs Gert; van Helden Jacques; Vandenbogaert Mathias; Weng Zhiping; Workman Christopher; Ye Chun; Zhu Zhou
Assessing computational tools for the discovery of transcription factor binding sites.
Nature biotechnology 2005;23(1):137-44.
-
2005: Mann Tobias P; Humbert Richard; Stamatoyannopolous John A; Noble William Stafford
Automated validation of polymerase chain reactions using amplicon melting curves.
Proceedings / IEEE Computational Systems Bioinformatics Conference, CSB. IEEE Computational Systems Bioinformatics Conference 2005;():377-85.
-
2005: Klammer Aaron A; Wu Christine C; MacCoss Michael J; Noble William Stafford
Peptide charge state determination for low-resolution tandem mass spectra.
Proceedings / IEEE Computational Systems Bioinformatics Conference, CSB. IEEE Computational Systems Bioinformatics Conference 2005;():175-85.
-
2005: Sheffler Will; Upfal Eli; Sedivy John; Noble William Stafford
A learned comparative expression measure for affymetrix genechip DNA microarrays.
Proceedings / IEEE Computational Systems Bioinformatics Conference, CSB. IEEE Computational Systems Bioinformatics Conference 2005;():144-54.
-
2004: Lanckriet Gert R G; De Bie Tijl; Cristianini Nello; Jordan Michael I; Noble William Stafford
A statistical framework for genomic data fusion.
Bioinformatics (Oxford, England) 2004;20(16):2626-35.
-
2004: Noble William Stafford
Data hoarding is harming proteomics.
Nature biotechnology 2004;22(10):1209; discussion 1209.
-
2004: Lu Henry; Li Weiqun; Noble William Stafford; Payan Donald; Anderson D C
Riboproteomics of the hepatitis C virus internal ribosomal entry site.
Journal of proteome research 2004;3(5):949-57.
-
2004: Tsuda Koji; Noble William Stafford
Learning kernels from biological networks by maximizing entropy.
Bioinformatics (Oxford, England) 2004;20 Suppl 1():i326-33.
-
2004: Wu Wei; Noble William S
Genomic data visualization on the Web.
Bioinformatics (Oxford, England) 2004;20(11):1804-5.
-
2004: Weston Jason; Elisseeff Andre; Zhou Dengyong; Leslie Christina S; Noble William Stafford
Protein ranking: from local to global structure in the protein similarity network.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(17):6559-63.
-
2004: Pavlidis Paul; Wapinski Ilan; Noble William Stafford
Support vector machine classification on the web.
Bioinformatics (Oxford, England) 2004;20(4):586-7.
-
2004: Leslie Christina S; Eskin Eleazar; Cohen Adiel; Weston Jason; Noble William Stafford
Mismatch string kernels for discriminative protein classification.
Bioinformatics (Oxford, England) 2004;20(4):467-76.
-
2004: Lanckriet G R G; Deng M; Cristianini N; Jordan M I; Noble W S
Kernel-based data fusion and its application to protein function prediction in yeast.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2004;():300-11.
-
2003: Qin Jie; Lewis Darrin P; Noble William Stafford
Kernel hierarchical gene clustering from microarray expression data.
Bioinformatics (Oxford, England) 2003;19(16):2097-104.
-
2003: Gomez Shawn M; Noble William Stafford; Rzhetsky Andrey
Learning to predict protein-protein interactions from protein sequences.
Bioinformatics (Oxford, England) 2003;19(15):1875-81.
-
2003: Bailey Timothy L; Noble William Stafford
Searching for statistically significant regulatory modules.
Bioinformatics (Oxford, England) 2003;19 Suppl 2():ii16-25.
-
2003: Pavlidis Paul; Li Qinghong; Noble William Stafford
The effect of replication on gene expression microarray experiments.
Bioinformatics (Oxford, England) 2003;19(13):1620-7.
-
2003: Segal Neil H; Pavlidis Paul; Antonescu Cristina R; Maki Robert G; Noble William S; DeSantis Diann; Woodruff James M; Lewis Jonathan J; Brennan Murray F; Houghton Alan N; Cordon-Cardo Carlos
Classification and subtype prediction of adult soft tissue sarcoma by functional genomics.
The American journal of pathology 2003;163(2):691-700.
-
2003: Gururaja Tarikere; Li Weiqun; Noble William Stafford; Payan Donald G; Anderson D C
Multiple functional categories of proteins identified in an in vitro cellular ubiquitin affinity extract using shotgun peptide sequencing.
Journal of proteome research 2003;2(4):394-404.
-
2003: Segal Neil H; Pavlidis Paul; Noble William S; Antonescu Cristina R; Viale Agnes; Wesley Umadevi V; Busam Klaus; Gallardo Humilidad; DeSantis Dianne; Brennan Murray F; Cordon-Cardo Carlos; Wolchok Jedd D; Houghton Alan N
Classification of clear-cell sarcoma as a subtype of melanoma by genomic profiling.
Journal of clinical oncology : official journal of the American Society of Clinical Oncology 2003;21(9):1775-81.
-
2003: Anderson D C; Li Weiqun; Payan Donald G; Noble William Stafford
A new algorithm for the evaluation of shotgun peptide sequencing in proteomics: support vector machine classification of peptide MS/MS spectra and SEQUEST scores.
Journal of proteome research 2003;2(2):137-46.
-
2003: Pavlidis Paul; Noble William Stafford
Matrix2png: a utility for visualizing matrix data.
Bioinformatics (Oxford, England) 2003;19(2):295-6.
-
2003: Liao Li; Noble William Stafford
Combining pairwise sequence similarity and support vector machines for detecting remote protein evolutionary and structural relationships.
Journal of computational biology : a journal of computational molecular cell biology 2003;10(6):857-68.
-
2003: Eskin Eleazar; Noble William Stafford; Singer Yoram
Protein family classification using sparse markov transducers.
Journal of computational biology : a journal of computational molecular cell biology 2003;10(2):187-213.
-
2002: Eskin Eleazar; Noble William Stafford; Singer Yoram
Using substitution matrices to estimate probability distributions for biological sequences.
Journal of computational biology : a journal of computational molecular cell biology 2002;9(6):775-91.
-
2002: Pavlidis Paul; Weston Jason; Cai Jinsong; Noble William Stafford
Learning gene functional classifications from multiple data types.
Journal of computational biology : a journal of computational molecular cell biology 2002;9(2):401-11.
-
2002: Leslie Christina; Eskin Eleazar; Noble William Stafford
The spectrum kernel: a string kernel for SVM protein classification.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2002;():564-75.
-
2002: Pavlidis Paul; Lewis Darrin P; Noble William Stafford
Exploring gene expression data with class scores.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2002;():474-85.
-
2001: Pavlidis P; Noble W S
Analysis of strain and regional variation in gene expression in mouse brain.
Genome biology 2001;2(10):RESEARCH0042.
Sign-in to see more
