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Masayasu Nomura
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25
Vu, Loan
12
Dodd, Jonathan
11
Oakes, Melanie
8
Beyer, Ann
7
French, Sarah
6
Keener, J
6
Siddiqi, Imran
5
Eliason, Kristilyn
4
Osheim, Yvonne
4
Schneider, David
4
Tongaonkar, Prasad
3
Wai, Hobert
3
Aris, John
3
Johzuka, Katsuki
2
Cioci, Francesco
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All Publications
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2009: Nomura Masayasu
Switching from prokaryotic molecular biology to eukaryotic molecular biology.
The Journal of biological chemistry 2009;284(15):9625-35.
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2008: Hontz Robert D; French Sarah L; Oakes Melanie L; Tongaonkar Prasad; Nomura Masayasu; Beyer Ann L; Smith Jeffrey S
Transcription of multiple yeast ribosomal DNA genes requires targeting of UAF to the promoter by Uaf30.
Molecular and cellular biology 2008;28(21):6709-19.
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2008: French Sarah L; Osheim Yvonne N; Schneider David A; Sikes Martha L; Fernandez Cesar F; Copela Laura A; Misra Vikram A; Nomura Masayasu; Wolin Sandra L; Beyer Ann L
Visual analysis of the yeast 5S rRNA gene transcriptome: regulation and role of La protein.
Molecular and cellular biology 2008;28(14):4576-87.
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2007: Schneider David A; Michel Antje; Sikes Martha L; Vu Loan; Dodd Jonathan A; Salgia Shilpa; Osheim Yvonne N; Beyer Ann L; Nomura Masayasu
Transcription elongation by RNA polymerase I is linked to efficient rRNA processing and ribosome assembly.
Molecular cell 2007;26(2):217-29.
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2006: Schneider D A; French S L; Osheim Y N; Bailey A O; Vu L; Dodd J; Yates J R; Beyer A L; Nomura M
RNA polymerase II elongation factors Spt4p and Spt5p play roles in transcription elongation by RNA polymerase I and rRNA processing.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(34):12707-12.
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2006: Oakes Melanie L; Johzuka Katsuki; Vu Loan; Eliason Kristilyn; Nomura Masayasu
Expression of rRNA genes and nucleolus formation at ectopic chromosomal sites in the yeast Saccharomyces cerevisiae.
Molecular and cellular biology 2006;26(16):6223-38.
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2006: Oakes Melanie L; Siddiqi Imran; French Sarah L; Vu Loan; Sato Manabu; Aris John P; Beyer Ann L; Nomura Masayasu
Role of histone deacetylase Rpd3 in regulating rRNA gene transcription and nucleolar structure in yeast.
Molecular and cellular biology 2006;26(10):3889-901.
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2005: Tongaonkar Prasad; French Sarah L; Oakes Melanie L; Vu Loan; Schneider David A; Beyer Ann L; Nomura Masayasu
Histones are required for transcription of yeast rRNA genes by RNA polymerase I.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(29):10129-34.
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2004: Schneider David A; Nomura Masayasu
RNA polymerase I remains intact without subunit exchange through multiple rounds of transcription in Saccharomyces cerevisiae.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(42):15112-7.
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2004: Kobayashi Takehiko; Horiuchi Takashi; Tongaonkar Prasad; Vu Loan; Nomura Masayasu
SIR2 regulates recombination between different rDNA repeats, but not recombination within individual rRNA genes in yeast.
Cell 2004;117(4):441-53.
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2004: Claypool Jonathan A; French Sarah L; Johzuka Katsuki; Eliason Kristilyn; Vu Loan; Dodd Jonathan A; Beyer Ann L; Nomura Masayasu
Tor pathway regulates Rrn3p-dependent recruitment of yeast RNA polymerase I to the promoter but does not participate in alteration of the number of active genes.
Molecular biology of the cell 2004;15(2):946-56.
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2003: Cioci Francesco; Vu Loan; Eliason Kristilyn; Oakes Melanie; Siddiqi Imran N; Nomura Masayasu
Silencing in yeast rDNA chromatin: reciprocal relationship in gene expression between RNA polymerase I and II.
Molecular cell 2003;12(1):135-45.
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2003: French Sarah L; Osheim Yvonne N; Cioci Francesco; Nomura Masayasu; Beyer Ann L
In exponentially growing Saccharomyces cerevisiae cells, rRNA synthesis is determined by the summed RNA polymerase I loading rate rather than by the number of active genes.
Molecular and cellular biology 2003;23(5):1558-68.
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2003: Tongaonkar Prasad; Dodd Jonathan A; Nomura Masayasu
Purification and assay of upstream activation factor, core factor, Rrn3p, and yeast RNA polymerase I.
Methods in enzymology 2003;370():109-20.
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2001: Siddiqi I N; Dodd J A; Vu L; Eliason K; Oakes M L; Keener J; Moore R; Young M K; Nomura M
Transcription of chromosomal rRNA genes by both RNA polymerase I and II in yeast uaf30 mutants lacking the 30 kDa subunit of transcription factor UAF.
The EMBO journal 2001;20(16):4512-21.
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2001: Wai H; Johzuka K; Vu L; Eliason K; Kobayashi T; Horiuchi T; Nomura M
Yeast RNA polymerase I enhancer is dispensable for transcription of the chromosomal rRNA gene and cell growth, and its apparent transcription enhancement from ectopic promoters requires Fob1 protein.
Molecular and cellular biology 2001;21(16):5541-53.
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2001: Siddiqi I; Keener J; Vu L; Nomura M
Role of TATA binding protein (TBP) in yeast ribosomal dna transcription by RNA polymerase I: defects in the dual functions of transcription factor UAF cannot be suppressed by TBP.
Molecular and cellular biology 2001;21(7):2292-7.
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2001: Kobayashi T; Nomura M; Horiuchi T
Identification of DNA cis elements essential for expansion of ribosomal DNA repeats in Saccharomyces cerevisiae.
Molecular and cellular biology 2001;21(1):136-47.
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2000: Wai H H; Vu L; Oakes M; Nomura M
Complete deletion of yeast chromosomal rDNA repeats and integration of a new rDNA repeat: use of rDNA deletion strains for functional analysis of rDNA promoter elements in vivo.
Nucleic acids research 2000;28(18):3524-34.
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2000: Tabb M M; Tongaonkar P; Vu L; Nomura M
Evidence for separable functions of Srp1p, the yeast homolog of importin alpha (Karyopherin alpha): role for Srp1p and Sts1p in protein degradation.
Molecular and cellular biology 2000;20(16):6062-73.
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1999: Oakes M; Siddiqi I; Vu L; Aris J; Nomura M
Transcription factor UAF, expansion and contraction of ribosomal DNA (rDNA) repeats, and RNA polymerase switch in transcription of yeast rDNA.
Molecular and cellular biology 1999;19(12):8559-69.
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1999: Nomura M
Regulation of ribosome biosynthesis in Escherichia coli and Saccharomyces cerevisiae: diversity and common principles.
Journal of bacteriology 1999;181(22):6857-64.
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1999: Vu L; Siddiqi I; Lee B S; Josaitis C A; Nomura M
RNA polymerase switch in transcription of yeast rDNA: role of transcription factor UAF (upstream activation factor) in silencing rDNA transcription by RNA polymerase II.
Proceedings of the National Academy of Sciences of the United States of America 1999;96(8):4390-5.
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1999: Nomura M
Engineering of bacterial ribosomes: replacement of all seven Escherichia coli rRNA operons by a single plasmid-encoded operon.
Proceedings of the National Academy of Sciences of the United States of America 1999;96(5):1820-2.
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1998: Keener J; Josaitis C A; Dodd J A; Nomura M
Reconstitution of yeast RNA polymerase I transcription in vitro from purified components. TATA-binding protein is not required for basal transcription.
The Journal of biological chemistry 1998;273(50):33795-802.
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1998: Oakes M; Aris J P; Brockenbrough J S; Wai H; Vu L; Nomura M
Mutational analysis of the structure and localization of the nucleolus in the yeast Saccharomyces cerevisiae.
The Journal of cell biology 1998;143(1):23-34.
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1998: Steffan J S; Keys D A; Vu L; Nomura M
Interaction of TATA-binding protein with upstream activation factor is required for activated transcription of ribosomal DNA by RNA polymerase I in Saccharomyces cerevisiae in vivo.
Molecular and cellular biology 1998;18(7):3752-61.
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1997: Keener J; Dodd J A; Lalo D; Nomura M
Histones H3 and H4 are components of upstream activation factor required for the high-level transcription of yeast rDNA by RNA polymerase I.
Proceedings of the National Academy of Sciences of the United States of America 1997;94(25):13458-62.
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1997: Azuma Y; Takio K; Tabb M M; Vu L; Nomura M
Phosphorylation of Srp1p, the yeast nuclear localization signal receptor, in vitro and in vivo.
Biochimie 1997;79(5):247-59.
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1996: Steffan J S; Keys D A; Dodd J A; Nomura M
The role of TBP in rDNA transcription by RNA polymerase I in Saccharomyces cerevisiae: TBP is required for upstream activation factor-dependent recruitment of core factor.
Genes & development 1996;10(20):2551-63.
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1996: Lalo D; Steffan J S; Dodd J A; Nomura M
RRN11 encodes the third subunit of the complex containing Rrn6p and Rrn7p that is essential for the initiation of rDNA transcription by yeast RNA polymerase I.
The Journal of biological chemistry 1996;271(35):21062-7.
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1996: Yamamoto R T; Nogi Y; Dodd J A; Nomura M
RRN3 gene of Saccharomyces cerevisiae encodes an essential RNA polymerase I transcription factor which interacts with the polymerase independently of DNA template.
The EMBO journal 1996;15(15):3964-73.
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1996: Keys D A; Lee B S; Dodd J A; Nguyen T T; Vu L; Fantino E; Burson L M; Nogi Y; Nomura M
Multiprotein transcription factor UAF interacts with the upstream element of the yeast RNA polymerase I promoter and forms a stable preinitiation complex.
Genes & development 1996;10(7):887-903.
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1995: Azuma Y; Tabb M M; Vu L; Nomura M
Isolation of a yeast protein kinase that is activated by the protein encoded by SRP1 (Srp1p) and phosphorylates Srp1p complexed with nuclear localization signal peptides.
Proceedings of the National Academy of Sciences of the United States of America 1995;92(11):5159-63.
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1994: Keys D A; Vu L; Steffan J S; Dodd J A; Yamamoto R T; Nogi Y; Nomura M
RRN6 and RRN7 encode subunits of a multiprotein complex essential for the initiation of rDNA transcription by RNA polymerase I in Saccharomyces cerevisiae.
Genes & development 1994;8(19):2349-62.
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1994: Yano R; Oakes M L; Tabb M M; Nomura M
Yeast Srp1p has homology to armadillo/plakoglobin/beta-catenin and participates in apparently multiple nuclear functions including the maintenance of the nucleolar structure.
Proceedings of the National Academy of Sciences of the United States of America 1994;91(15):6880-4.
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1994: Saito K; Nomura M
Post-transcriptional regulation of the str operon in Escherichia coli. Structural and mutational analysis of the target site for translational repressor S7.
Journal of molecular biology 1994;235(1):125-39.
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1994: Saito K; Mattheakis L C; Nomura M
Post-transcriptional regulation of the str operon in Escherichia coli. Ribosomal protein S7 inhibits coupled translation of S7 but not its independent translation.
Journal of molecular biology 1994;235(1):111-24.
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1993: Seyfzadeh M; Keener J; Nomura M
spoT-dependent accumulation of guanosine tetraphosphate in response to fatty acid starvation in Escherichia coli.
Proceedings of the National Academy of Sciences of the United States of America 1993;90(23):11004-8.
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1993: Oakes M; Nogi Y; Clark M W; Nomura M
Structural alterations of the nucleolus in mutants of Saccharomyces cerevisiae defective in RNA polymerase I.
Molecular and cellular biology 1993;13(4):2441-55.
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1993: Keener J; Nomura M
Dominant lethal phenotype of a mutation in the -35 recognition region of Escherichia coli sigma 70.
Proceedings of the National Academy of Sciences of the United States of America 1993;90(5):1751-5.
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1993: Nogi Y; Yano R; Dodd J; Carles C; Nomura M
Gene RRN4 in Saccharomyces cerevisiae encodes the A12.2 subunit of RNA polymerase I and is essential only at high temperatures.
Molecular and cellular biology 1993;13(1):114-22.
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1992: Yano R; Oakes M; Yamaghishi M; Dodd J A; Nomura M
Cloning and characterization of SRP1, a suppressor of temperature-sensitive RNA polymerase I mutations, in Saccharomyces cerevisiae.
Molecular and cellular biology 1992;12(12):5640-51.
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1991: Kulkens T; Riggs D L; Heck J D; Planta R J; Nomura M
The yeast RNA polymerase I promoter: ribosomal DNA sequences involved in transcription initiation and complex formation in vitro.
Nucleic acids research 1991;19(19):5363-70.
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1991: Nogi Y; Vu L; Nomura M
An approach for isolation of mutants defective in 35S ribosomal RNA synthesis in Saccharomyces cerevisiae.
Proceedings of the National Academy of Sciences of the United States of America 1991;88(16):7026-30.
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1991: Qin S; Nakajima B; Nomura M; Arfin S M
Cloning and characterization of a Saccharomyces cerevisiae gene encoding a new member of the ubiquitin-conjugating protein family.
The Journal of biological chemistry 1991;266(23):15549-54.
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1991: Dodd J; Kolb J M; Nomura M
Lack of complete cooperativity of ribosome assembly in vitro and its possible relevance to in vivo ribosome assembly and the regulation of ribosomal gene expression.
Biochimie 1991;73(6):757-67.
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1991: Nogi Y; Yano R; Nomura M
Synthesis of large rRNAs by RNA polymerase II in mutants of Saccharomyces cerevisiae defective in RNA polymerase I.
Proceedings of the National Academy of Sciences of the United States of America 1991;88(9):3962-6.
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1991: Yano R; Nomura M
Suppressor analysis of temperature-sensitive mutations of the largest subunit of RNA polymerase I in Saccharomyces cerevisiae: a suppressor gene encodes the second-largest subunit of RNA polymerase I.
Molecular and cellular biology 1991;11(2):754-64.
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1991: McCusker J H; Yamagishi M; Kolb J M; Nomura M
Suppressor analysis of temperature-sensitive RNA polymerase I mutations in Saccharomyces cerevisiae: suppression of mutations in a zinc-binding motif by transposed mutant genes.
Molecular and cellular biology 1991;11(2):746-53.
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1990: Riggs D L; Nomura M
Specific transcription of Saccharomyces cerevisiae 35 S rDNA by RNA polymerase I in vitro.
The Journal of biological chemistry 1990;265(13):7596-603.
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1990: Wittekind M; Kolb J M; Dodd J; Yamagishi M; Mémet S; Buhler J M; Nomura M
Conditional expression of RPA190, the gene encoding the largest subunit of yeast RNA polymerase I: effects of decreased rRNA synthesis on ribosomal protein synthesis.
Molecular and cellular biology 1990;10(5):2049-59.
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1989: Mattheakis L; Vu L; Sor F; Nomura M
Retroregulation of the synthesis of ribosomal proteins L14 and L24 by feedback repressor S8 in Escherichia coli.
Proceedings of the National Academy of Sciences of the United States of America 1989;86(2):448-52.
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1988: Yamagishi M; Nomura M
Cloning and sequence determination of the gene encoding the largest subunit of the fission yeast Schizosaccharomyces pombe RNA polymerase I.
Gene 1988;74(2):503-15.
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1988: Said B; Cole J R; Nomura M
Mutational analysis of the L1 binding site of 23S rRNA in Escherichia coli.
Nucleic acids research 1988;16(22):10529-45.
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1988: Yamagishi M; Nomura M
Effects of induction of rRNA overproduction on ribosomal protein synthesis and ribosome subunit assembly in Escherichia coli.
Journal of bacteriology 1988;170(11):5042-50.
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1988: Cerretti D P; Mattheakis L C; Kearney K R; Vu L; Nomura M
Translational regulation of the spc operon in Escherichia coli. Identification and structural analysis of the target site for S8 repressor protein.
Journal of molecular biology 1988;204(2):309-29.
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1988: Wittekind M; Dodd J; Vu L; Kolb J M; Buhler J M; Sentenac A; Nomura M
Isolation and characterization of temperature-sensitive mutations in RPA190, the gene encoding the largest subunit of RNA polymerase I from Saccharomyces cerevisiae.
Molecular and cellular biology 1988;8(10):3997-4008.
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1988: Mattheakis L C; Nomura M
Feedback regulation of the spc operon in Escherichia coli: translational coupling and mRNA processing.
Journal of bacteriology 1988;170(10):4484-92.
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1988: Yamagishi M; Nomura M
Deficiency in both type I and type II DNA topoisomerase activities differentially affect rRNA and ribosomal protein synthesis in Schizosaccharomyces pombe.
Current genetics 1988;13(4):305-14.
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1987: Yamagishi M; de Boer H A; Nomura M
Feedback regulation of rRNA synthesis. A mutational alteration in the anti-Shine-Dalgarno region of the 16 S rRNA gene abolishes regulation.
Journal of molecular biology 1987;198(3):547-50.
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1987: Cole J R; Olsson C L; Hershey J W; Grunberg-Manago M; Nomura M
Feedback regulation of rRNA synthesis in Escherichia coli. Requirement for initiation factor IF2.
Journal of molecular biology 1987;198(3):383-92.
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1987: Thomas M S; Bedwell D M; Nomura M
Regulation of alpha operon gene expression in Escherichia coli. A novel form of translational coupling.
Journal of molecular biology 1987;196(2):333-45.
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