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Magnus Nordborg

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Genes & Molecular Sequences

Physiology

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Genetics, Population

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Chemicals & Drugs

Arabidopsis Proteins

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Publications

TOP 3
Quan Long; Umit Seren; Bjarni J Vilhjalmsson; Qingrun Zhang; Petar Forai; Magnus Nordborg
JAWAMix5: an out-of-core HDF5-based java implementation of whole-genome association studies using mixed models.
Sandra Beleza; Joana Campos; Sophie I Candille; Marc A Coram; António Correia E Silva; Nicholas A Johnson; Jailson Lopes; Magnus Nordborg; Jorge Rocha; Mark D Shriver; Devin M Absher; Tovi M Anderson; Isabel Inês Araújo; Gregory S Barsh; Bjarni J Vilhjálmsson; Hua Tang
Genetic architecture of skin and eye color in an African-European admixed population.
Bjarni J Vilhjálmsson; Magnus Nordborg
The nature of confounding in genome-wide association studies.

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All Publications

2013: Quan Long; Umit Seren; Bjarni J Vilhjalmsson; Qingrun Zhang; Petar Forai; Magnus Nordborg
JAWAMix5: an out-of-core HDF5-based java implementation of whole-genome association studies using mixed models.
Bioinformatics (Oxford, England) 2013;29(9):1220-2.
2013: Sandra Beleza; Joana Campos; Sophie I Candille; Marc A Coram; António Correia E Silva; Nicholas A Johnson; Jailson Lopes; Magnus Nordborg; Jorge Rocha; Mark D Shriver; Devin M Absher; Tovi M Anderson; Isabel Inês Araújo; Gregory S Barsh; Bjarni J Vilhjálmsson; Hua Tang
Genetic architecture of skin and eye color in an African-European admixed population.
PLoS genetics 2013;9(3):e1003372.
2013: Bjarni J Vilhjálmsson; Magnus Nordborg
The nature of confounding in genome-wide association studies.
Nature reviews. Genetics 2013;14(1):1-2.
2012: Ümit Seren; Vincent Segura; Bjarni J Vilhjálmsson; Petar Forai; Matthew W Horton; Yu S Huang; Quan Long; Dazhe Meng; Magnus Nordborg
GWAPP: a web application for genome-wide association mapping in Arabidopsis.
The Plant cell 2012;24(12):4793-805.
2012: Arthur Korte; Quan Long; Alexander Platt; Vincent Segura; Bjarni J Vilhjálmsson; Magnus Nordborg
A mixed-model approach for genome-wide association studies of correlated traits in structured populations.
Nature genetics 2012;44(9):1066-71.
2012: Vincent Segura; Bjarni J Vilhjálmsson; Ümit Seren; Arthur Korte; Quan Long; Alexander Platt; Magnus Nordborg
An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations.
Nature genetics 2012;44(7):825-30.
2012: Matthew W Horton; Yu S Huang; N Wayan Muliyati; Magnus Nordborg; Alexander Platt; F Gianluca Sperone; Christopher Toomajian; Bjarni J Vilhjálmsson; Susanna Atwell; Adam Auton; Justin O Borevitz; Angela M Hancock; Joy Bergelson
Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel.
Nature genetics 2012;44(2):212-6.
2011: Alison E Anastasio; Justin O Borevitz; Erich Grotewold; Matthew Horton; Magnus Nordborg; Alexander Platt; Randy Scholl; Joy Bergelson
Source verification of mis-identified Arabidopsis thaliana accessions.
The Plant journal : for cell and molecular biology 2011;67(3):554-66.
2011: Tina T Hu; Pedro Pattyn; Erica G Bakker; Jun Cao; Jan-Fang Cheng; Richard M Clark; Noah Fahlgren; Jeffrey A Fawcett; Jane Grimwood; Heidrun Gundlach; Georg Haberer; Jesse D Hollister; Stephan Ossowski; Robert P Ottilar; Asaf A Salamov; Korbinian Schneeberger; Manuel Spannagl; Xi Wang; Liang Yang; Mikhail E Nasrallah; Joy Bergelson; James C Carrington; Brandon S Gaut; Jeremy Schmutz; Klaus F X Mayer; Yves Van de Peer; Igor V Grigoriev; Magnus Nordborg; Detlef Weigel; Ya-Long Guo
The Arabidopsis lyrata genome sequence and the basis of rapid genome size change.
Nature genetics 2011;43(5):476-81.
2011: Amy Strange; Peijin Li; Clare Lister; Jillian Anderson; Norman Warthmann; Chikako Shindo; Judith Irwin; Magnus Nordborg; Caroline Dean
Major-effect alleles at relatively few loci underlie distinct vernalization and flowering variation in Arabidopsis accessions.
PloS one 2011;6(5):e19949.
2010: Yan Li; Yu Huang; Joy Bergelson; Magnus Nordborg; Justin O Borevitz
Association mapping of local climate-sensitive quantitative trait loci in Arabidopsis thaliana.
Proceedings of the National Academy of Sciences of the United States of America 2010;107(49):21199-204.
2010: Marco Todesco; Sureshkumar Balasubramanian; Tina T Hu; M Brian Traw; Matthew Horton; Petra Epple; Christine Kuhns; Sridevi Sureshkumar; Christopher Schwartz; Christa Lanz; Roosa A E Laitinen; Yu Huang; joanne chory; Volker Lipka; Justin O Borevitz; Jeffery L Dangl; Joy Bergelson; Magnus Nordborg; Detlef Weigel
Natural allelic variation underlying a major fitness trade-off in Arabidopsis thaliana.
Nature 2010;465(7298):632-6.
2010: Alexander Platt; Matthew Horton; Yu S Huang; Yan Li; Alison E Anastasio; Ni Wayan Mulyati; Jon Agren; Oliver Bossdorf; Diane Byers; Kathleen Donohue; Megan Dunning; Eric B Holub; Andrew Hudson; Valérie Le Corre; Olivier Loudet; Fabrice Roux; Norman Warthmann; Detlef Weigel; Luz Rivero; Randy Scholl; Magnus Nordborg; Joy Bergelson; Justin O Borevitz
The scale of population structure in Arabidopsis thaliana.
PLoS genetics 2010;6(2):e1000843.
2010: Elizabeth A Cooper; Justen B Whittall; Scott A Hodges; Magnus Nordborg
Genetic variation at nuclear loci fails to distinguish two morphologically distinct species of Aquilegia.
PloS one 2010;5(1):e8655.
2007: Sung Kim; Vincent Plagnol; Tina T Hu; Christopher Toomajian; Richard M Clark; Stephan Ossowski; Joseph R Ecker; Detlef Weigel; Magnus Nordborg
Recombination and linkage disequilibrium in Arabidopsis thaliana.
Nature genetics 2007;39(9):1151-5.
2007: Chunlao Tang; Christopher Toomajian; Susan Sherman-Broyles; Vincent Plagnol; Ya-Long Guo; Tina T Hu; Richard M Clark; June B Nasrallah; Detlef Weigel; Magnus Nordborg
The evolution of selfing in Arabidopsis thaliana.
Science (New York, N.Y.) 2007;317(5841):1070-2.
2007: Richard M Clark; Gabriele Schweikert; Christopher Toomajian; Stephan Ossowski; Georg Zeller; Paul Shinn; Norman Warthmann; Tina T Hu; Glenn Fu; David Hinds; Huaming Chen; Kelly A Frazer; Daniel H Huson; Bernhard Schölkopf; Magnus Nordborg; Gunnar Rätsch; Joseph R Ecker; Detlef Weigel
Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana.
Science (New York, N.Y.) 2007;317(5836):338-42.
2007: Justin O Borevitz; Samuel P Hazen; Todd P Michael; Geoffrey P Morris; Ivan Baxter; Tina T Hu; Huaming Chen; Jonathan D Werner; Magnus Nordborg; David Salt; Steve A Kay; joanne chory; Detlef Weigel; Jonathan D G Jones; Joseph R Ecker
Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(29):12057-62.
2007: Nathan B Sutter; Carlos Bustamante; Kevin Chase; Melissa M Gray; Keyan Zhao; Lan Zhu; Badri Padhukasahasram; Eric Karlins; Sean Davis; Paul Jones; Pascale Quignon; Gary S Johnson; Heidi G Parker; Neale Fretwell; Dana S Mosher; Dennis F Lawler; Ebenezer Satyaraj; Magnus Nordborg; Karl G Lark; Robert K Wayne; Elaine A Ostrander
A single IGF1 allele is a major determinant of small size in dogs.
Science (New York, N.Y.) 2007;316(5821):112-5.
2007: Keyan Zhao; María José Aranzana; Sung Kim; Clare Lister; Chikako Shindo; Chunlao Tang; Christopher Toomajian; Honggang Zheng; Caroline Dean; Paul Marjoram; Magnus Nordborg
An Arabidopsis example of association mapping in structured samples.
PLoS genetics 2007;3(1):e4.
2007: Keyan Zhao; Magnus Nordborg; Paul Marjoram
Genome-wide association mapping using mixed-models: application to GAW15 Problem 3.
BMC proceedings 2007;1 Suppl 1():S164.
2006: Chikako Shindo; Clare Lister; Pedro Crevillen; Magnus Nordborg; Caroline Dean
Variation in the epigenetic silencing of FLC contributes to natural variation in Arabidopsis vernalization response.
Genes & development 2006;20(22):3079-83.
2006: Badri Padhukasahasram; Jeffrey D Wall; Paul Marjoram; Magnus Nordborg
Estimating recombination rates from single-nucleotide polymorphisms using summary statistics.
Genetics 2006;174(3):1517-28.
2006: Noah A Rosenberg; Magnus Nordborg
A general population-genetic model for the production by population structure of spurious genotype-phenotype associations in discrete, admixed or spatially distributed populations.
Genetics 2006;173(3):1665-78.
2006: Mattias Jakobsson; Jenny Hagenblad; Simon Tavaré; Torbjörn Säll; Christer Halldén; Christina Lind-Halldén; Magnus Nordborg
A unique recent origin of the allotetraploid species Arabidopsis suecica: Evidence from nuclear DNA markers.
Molecular biology and evolution 2006;23(6):1217-31.
2006: Sung Kim; Keyan Zhao; Rong Jiang; John Molitor; Justin O Borevitz; Magnus Nordborg; Paul Marjoram
Association mapping with single-feature polymorphisms.
Genetics 2006;173(2):1125-33.
2006: Christopher Toomajian; Tina T Hu; María José Aranzana; Clare Lister; Chunlao Tang; Honggang Zheng; Keyan Zhao; Peter Calabrese; Caroline Dean; Magnus Nordborg
A nonparametric test reveals selection for rapid flowering in the Arabidopsis genome.
PLoS biology 2006;4(5):e137.
2006: E G Bakker; Eli A Stahl; Christopher Toomajian; Magnus Nordborg; Martin Kreitman; Joy Bergelson
Distribution of genetic variation within and among local populations of Arabidopsis thaliana over its species range.
Molecular ecology 2006;15(5):1405-18.
2006: Vincent Plagnol; Badri Padhukasahasram; Jeffrey D Wall; Paul Marjoram; Magnus Nordborg
Relative influences of crossing over and gene conversion on the pattern of linkage disequilibrium in Arabidopsis thaliana.
Genetics 2006;172(4):2441-8.
2005: María José Aranzana; Sung Kim; Keyan Zhao; Erica Bakker; Matthew Horton; Katrin Jakob; Clare Lister; John Molitor; Chikako Shindo; Chunlao Tang; Christopher Toomajian; Brian Traw; Honggang Zheng; Joy Bergelson; Caroline Dean; Paul Marjoram; Magnus Nordborg
Genome-wide association mapping in Arabidopsis identifies previously known flowering time and pathogen resistance genes.
PLoS genetics 2005;1(5):e60.
2005: Magnus Nordborg; Tina T Hu; Yoko Ishino; Jinal Jhaveri; Christopher Toomajian; Honggang Zheng; Erica Bakker; Peter Calabrese; Jean Gladstone; Rana Goyal; Mattias Jakobsson; Sung Kim; Yuri Morozov; Badri Padhukasahasram; Vincent Plagnol; Noah A Rosenberg; Chitiksha Shah; Jeffrey D Wall; Jue Wang; Keyan Zhao; Theodore Kalbfleisch; Vincent Schulz; Martin Kreitman; Joy Bergelson
The pattern of polymorphism in Arabidopsis thaliana.
PLoS biology 2005;3(7):e196.
2005: Detlef Weigel; Magnus Nordborg
Natural variation in Arabidopsis. How do we find the causal genes?
Plant physiology 2005;138(2):567-8.
2005: Chikako Shindo; Maria Jose Aranzana; Clare Lister; Catherine Baxter; Colin Nicholls; Magnus Nordborg; Caroline Dean
Role of FRIGIDA and FLOWERING LOCUS C in determining variation in flowering time of Arabidopsis.
Plant physiology 2005;138(2):1163-73.
2004: Carsten Wiuf; Keyan Zhao; Hideki Innan; Magnus Nordborg
The probability and chromosomal extent of trans-specific polymorphism.
Genetics 2004;168(4):2363-72.
2004: Jenny Hagenblad; Chunlao Tang; John Molitor; Jonathan Werner; Keyan Zhao; Honggang Zheng; Paul Marjoram; Detlef Weigel; Magnus Nordborg
Haplotype structure and phenotypic associations in the chromosomal regions surrounding two Arabidopsis thaliana flowering time loci.
Genetics 2004;168(3):1627-38.
2004: Badri Padhukasahasram; Paul Marjoram; Magnus Nordborg
Estimating the rate of gene conversion on human chromosome 21.
American journal of human genetics 2004;75(3):386-97.
2004: Ming Li; Magnus Nordborg; Lei M Li
Adjust quality scores from alignment and improve sequencing accuracy.
Nucleic acids research 2004;32(17):5183-91.
2003: Hideki Innan; Magnus Nordborg
The extent of linkage disequilibrium and haplotype sharing around a polymorphic site.
Genetics 2003;165(1):437-44.
2003: Norman Arnheim; Peter Calabrese; Magnus Nordborg
Hot and cold spots of recombination in the human genome: the reason we should find them and how this can be achieved.
American journal of human genetics 2003;73(1):5-16.
2003: Justin O Borevitz; Magnus Nordborg
The impact of genomics on the study of natural variation in Arabidopsis.
Plant physiology 2003;132(2):718-25.
2003: Hideki Innan; Badri Padhukasahasram; Magnus Nordborg
The pattern of polymorphism on human chromosome 21.
Genome research 2003;13(6A):1158-68.
2003: Magnus Nordborg; Hideki Innan
The genealogy of sequences containing multiple sites subject to strong selection in a subdivided population.
Genetics 2003;163(3):1201-13.
2002: Kui Zhang; Peter Calabrese; Magnus Nordborg; Fengzhu Sun
Haplotype block structure and its applications to association studies: power and study designs.
American journal of human genetics 2002;71(6):1386-94.
2002: Hideki Innan; Magnus Nordborg
Recombination or mutational hot spots in human mtDNA?
Molecular biology and evolution 2002;19(7):1122-7.
2002: Jenny Hagenblad; Magnus Nordborg
Sequence variation and haplotype structure surrounding the flowering time locus FRI in Arabidopsis thaliana.
Genetics 2002;161(1):289-98.
2002: Noah A Rosenberg; Magnus Nordborg
Genealogical trees, coalescent theory and the analysis of genetic polymorphisms.
Nature reviews. Genetics 2002;3(5):380-90.
2002: Magnus Nordborg; Simon Tavaré
Linkage disequilibrium: what history has to tell us.
Trends in genetics : TIG 2002;18(2):83-90.
2002: Magnus Nordborg; Hideki Innan
Molecular population genetics.
Current opinion in plant biology 2002;5(1):69-73.
2002: Magnus Nordborg; Justin O Borevitz; Joy Bergelson; Charles C Berry; joanne chory; Jenny Hagenblad; Martin Kreitman; Julin Maloof; Tina Noyes; Peter J Oefner; Eli A Stahl; Detlef Weigel
The extent of linkage disequilibrium in Arabidopsis thaliana.
Nature genetics 2002;30(2):190-3.
2001: Peter Donnelly; Magnus Nordborg; P Joyce
Likelihoods and simulation methods for a class of nonneutral population genetics models.
Genetics 2001;159(2):853-67.
1999: Magnus Nordborg; Joy Bergelson
The effect of seed and rosette cold treatment on germination and flowering time in some Arabidopsis thaliana (Brassicaceae) ecotypes.
American journal of botany 1999;86(4):470-5.
1997: Brian Charlesworth; Magnus Nordborg; D Charlesworth
The effects of local selection, balanced polymorphism and background selection on equilibrium patterns of genetic diversity in subdivided populations.
Genetical research 1997;70(2):155-74.
1997: Magnus Nordborg
Structured coalescent processes on different time scales.
Genetics 1997;146(4):1501-14.
1997: Magnus Nordborg; Peter Donnelly
The coalescent process with selfing.
Genetics 1997;146(3):1185-95.
1996: Magnus Nordborg; Brian Charlesworth; D Charlesworth
The effect of recombination on background selection.
Genetical research 1996;67(2):159-74.