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Tuula Nyman

Research Profile

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Chemicals & Drugs

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Anatomy

Physiology

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TOP 3
Uwe Richter; Giuseppe Cannino; Dario Greco; Howard T Jacobs; Taina Lahtinen; Niina Lietzén; Pekka Marttinen; Maarit Myöhänen; Tuula A Nyman; Brendan J Battersby
A mitochondrial ribosomal and RNA decay pathway blocks cell proliferation.
Kristiina Tammimies; Morana Vitezic; Thomas R Bürglin; Carsten O Daub; Juha Kere; Sylvie Le Guyader; Hans Matsson; Tuula A Nyman; Tiina Ohman; Staffan Strömblad; Isabel Tapia-Páez
Molecular networks of DYX1C1 gene show connection to neuronal migration genes and cytoskeletal proteins.
Elina Välimäki; Niina Lietzén; Sampsa Matikainen; Juho J Miettinen; Tuula A Nyman
Monosodium urate activates Src/Pyk2/PI3 kinase and cathepsin dependent unconventional protein secretion from human primary macrophages.

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All Publications

2013: Uwe Richter; Giuseppe Cannino; Dario Greco; Howard T Jacobs; Taina Lahtinen; Niina Lietzén; Pekka Marttinen; Maarit Myöhänen; Tuula A Nyman; Brendan J Battersby
A mitochondrial ribosomal and RNA decay pathway blocks cell proliferation.
Current biology : CB 2013;23(6):535-41.
2013: Kristiina Tammimies; Morana Vitezic; Thomas R Bürglin; Carsten O Daub; Juha Kere; Sylvie Le Guyader; Hans Matsson; Tuula A Nyman; Tiina Ohman; Staffan Strömblad; Isabel Tapia-Páez
Molecular networks of DYX1C1 gene show connection to neuronal migration genes and cytoskeletal proteins.
Biological psychiatry 2013;73(6):583-90.
2013: Elina Välimäki; Niina Lietzén; Sampsa Matikainen; Juho J Miettinen; Tuula A Nyman
Monosodium urate activates Src/Pyk2/PI3 kinase and cathepsin dependent unconventional protein secretion from human primary macrophages.
Molecular & cellular proteomics : MCP 2013;12(3):749-63.
2012: Juho J Miettinen; Sampsa Matikainen; Tuula A Nyman
Global secretome characterization of herpes simplex virus 1-infected human primary macrophages.
Journal of virology 2012;86(23):12770-8.
2012: Yizhou Hu; Ping Chen; Sampsa Hautaniemi; Jorma Keski-Oja; Li Li; Tuula A Nyman; Irene Ylivinkka; Marko Hyytiäinen
Netrin-4 promotes glioblastoma cell proliferation through integrin β4 signaling.
Neoplasia (New York, N.Y.) 2012;14(3):219-27.
2012: Johanna Koponen; Kerttu Koskenniemi; Kati Laakso; Tuula A Nyman; Kirsi Savijoki; Soile Tynkkynen; Willem M de Vos; Nisse Kalkkinen; Matti Kankainen; Pekka Varmanen
Effect of acid stress on protein expression and phosphorylation in Lactobacillus rhamnosus GG.
Journal of proteomics 2012;75(4):1357-74.
2012: Justyna Bien; Wladyslaw Cabaj; Katarzyna Gozdzik; Bozena Moskwa; Anu Näreaho; Tuula A Nyman; Pekka Varmanen; Kirsi Savijoki
Comparative analysis of excretory-secretory antigens of Trichinella spiralis and Trichinella britovi muscle larvae by two-dimensional difference gel electrophoresis and immunoblotting.
Proteome science 2012;10(1):10.
2011: Kirsi Savijoki; Pekka Varmanen; Tapani Alatossava; Matti Kankainen; Kerttu Koskenniemi; Niina Lietzén; Tuula A Nyman
Comparative proteome cataloging of Lactobacillus rhamnosus strains GG and Lc705.
Journal of proteome research 2011;10(8):3460-73.
2011: Minja Laulajainen; Taru Muranen; Tuula A Nyman; Olli Carpén; Mikaela Grönholm
Multistep phosphorylation by oncogenic kinases enhances the degradation of the NF2 tumor suppressor merlin.
Neoplasia (New York, N.Y.) 2011;13(7):643-52.
2011: Niina Lietzén; Tiina Ohman; Johanna Rintahaka; Ilkka Julkunen; Tero Aittokallio; Sampsa Matikainen; Tuula A Nyman
Quantitative subcellular proteome and secretome profiling of influenza A virus-infected human primary macrophages.
PLoS pathogens 2011;7(5):e1001340.
2010: Niina Lietzén; Lari Natri; Olli S Nevalainen; Jussi Salmi; Tuula A Nyman
Compid: a new software tool to integrate and compare MS/MS based protein identification results from Mascot and Paragon.
Journal of proteome research 2010;9(12):6795-800.
2010: Robert Moulder; Tapio Lönnberg; Laura L Elo; Jan-Jonas Filén; Eeva Rainio; Garry Corthals; Matej Oresic; Tuula A Nyman; Tero Aittokallio; Riitta Lahesmaa
Quantitative proteomics analysis of the nuclear fraction of human CD4+ cells in the early phases of IL-4-induced Th2 differentiation.
Molecular & cellular proteomics : MCP 2010;9(9):1937-53.
2010: Tiina Ohman; Niina Lietzén; Elina Välimäki; Jesper Melchjorsen; Sampsa Matikainen; Tuula A Nyman
Cytosolic RNA recognition pathway activates 14-3-3 protein mediated signaling and caspase-dependent disruption of cytokeratin network in human keratinocytes.
Journal of proteome research 2010;9(3):1549-64.
2010: Minna A Korolainen; Tuula A Nyman; Tero Aittokallio; Tuula Pirttilä
An update on clinical proteomics in Alzheimer's research.
Journal of neurochemistry 2010;112(6):1386-414.
2010: Mirva Piippo; Niina Lietzén; Olli S Nevalainen; Jussi Salmi; Tuula A Nyman
Pripper: prediction of caspase cleavage sites from whole proteomes.
BMC bioinformatics 2010;11():320.
2009: Tiina Ohman; Johanna Rintahaka; Nisse Kalkkinen; Sampsa Matikainen; Tuula A Nyman
Actin and RIG-I/MAVS signaling components translocate to mitochondria upon influenza A virus infection of human primary macrophages.
Journal of immunology (Baltimore, Md. : 1950) 2009;182(9):5682-92.
2009: Soile Tuomela; Kirsi J Rautajoki; Robert Moulder; Tuula A Nyman; Riitta Lahesmaa
Identification of novel Stat6 regulated proteins in IL-4-treated mouse lymphocytes.
Proteomics 2009;9(4):1087-98.
2009: Jorma Salmi; Tuula A Nyman; Olli S Nevalainen; Tero Aittokallio
Filtering strategies for improving protein identification in high-throughput MS/MS studies.
Proteomics 2009;9(4):848-60.
2009: Jan-Jonas Filén; Sanna Filén; Robert Moulder; Soile Tuomela; Helena Ahlfors; Anne West; Petri Kouvonen; Suvi Kantola; Mari Björkman; Mikko Katajamaa; Omid Rasool; Tuula A Nyman; Riitta Lahesmaa
Quantitative proteomics reveals GIMAP family proteins 1 and 4 to be differentially regulated during human T helper cell differentiation.
Molecular & cellular proteomics : MCP 2009;8(1):32-44.
2008: Minna A Korolainen; Garry L Corthals; Petri Kouvonen; Kaisa M A Kurkinen; Tuula A Nyman
3rd Annual FinnProt Meeting: from cells to systems.
Expert review of proteomics 2008;5(3):389-91.
2007: Minna A Korolainen; Tuula A Nyman; Paula Nyyssönen; E Samuel Hartikainen; Tuula Pirttilä
Multiplexed proteomic analysis of oxidation and concentrations of cerebrospinal fluid proteins in Alzheimer disease.
Clinical chemistry 2007;53(4):657-65.
2007: Riitta Rakkola; Sampsa Matikainen; Tuula A Nyman
Proteome analysis of human macrophages reveals the upregulation of manganese-containing superoxide dismutase after toll-like receptor activation.
Proteomics 2007;7(3):378-84.
2007: Kirsi J Rautajoki; Elisa M Marttila; Tuula A Nyman; Riitta Lahesmaa
Interleukin-4 inhibits caspase-3 by regulating several proteins in the Fas pathway during initial stages of human T helper 2 cell differentiation.
Molecular & cellular proteomics : MCP 2007;6(2):238-51.
2006: Maarit Takatalo; Petri Kouvonen; Garry L Corthals; Tuula A Nyman; Ragna H Rönnholm
Identification of new Golgi complex specific proteins by direct organelle proteomic analysis.
Proteomics 2006;6(12):3502-8.
2006: Jorma Salmi; Robert Moulder; Jan-Jonas Filén; Olli S Nevalainen; Tuula A Nyman; Riitta Lahesmaa; Tero Aittokallio
Quality classification of tandem mass spectrometry data.
Bioinformatics (Oxford, England) 2006;22(4):400-6.
2006: Minna A Korolainen; Gundars Goldsteins; Tuula A Nyman; Irina Alafuzoff; Jari Koistinaho; Tuula Pirttilä
Oxidative modification of proteins in the frontal cortex of Alzheimer's disease brain.
Neurobiology of aging 2006;27(1):42-53.
2005: Jan-Jonas Filén; Tuula A Nyman; Juha Korhonen; David R Goodlett; Riitta Lahesmaa
Characterization of microsomal fraction proteome in human lymphoblasts reveals the down-regulation of galectin-1 by interleukin-12.
Proteomics 2005;5(18):4719-32.
2005: Minna A Korolainen; Seppo Auriola; Tuula A Nyman; Irina Alafuzoff; Tuula Pirttilä
Proteomic analysis of glial fibrillary acidic protein in Alzheimer's disease and aging brain.
Neurobiology of disease 2005;20(3):858-70.
2005: Arsi T Rosengren; Tuula A Nyman; Riitta Lahesmaa
Proteome profiling of interleukin-12 treated human T helper cells.
Proteomics 2005;5(12):3137-41.
2005: Benny Björkblom; Nina Westerlund; Vesa Hongisto; Vladislav Komarovski; Jan-Jonas Filén; Tuula A Nyman; Tuula Kallunki; Michael J Courtney; Eleanor T Coffey
Constitutively active cytoplasmic c-Jun N-terminal kinase 1 is a dominant regulator of dendritic architecture: role of microtubule-associated protein 2 as an effector.
The Journal of neuroscience : the official journal of the Society for Neuroscience 2005;25(27):6350-61.
2005: Robert Moulder; Jan-Jonas Filén; Jorma Salmi; Mikko Katajamaa; Olli S Nevalainen; Matej Oresic; Tero Aittokallio; Riitta Lahesmaa; Tuula A Nyman
A comparative evaluation of software for the analysis of liquid chromatography-tandem mass spectrometry data from isotope coded affinity tag experiments.
Proteomics 2005;5(11):2748-60.
2005: Tero Aittokallio; Jorma Salmi; Tuula A Nyman; Olli S Nevalainen
Geometrical distortions in two-dimensional gels: applicable correction methods.
Journal of chromatography. B, Analytical technologies in the biomedical and life sciences 2005;815(1-2):25-37.
2005: Arsi T Rosengren; Tuula A Nyman; Saija Syyrakki; Sampsa Matikainen; Riitta Lahesmaa
Proteomic and transcriptomic characterization of interferon-alpha-induced human primary T helper cells.
Proteomics 2005;5(2):371-9.
2005: Riitta Rakkola; Sampsa Matikainen; Tuula A Nyman
Proteome characterization of human NK-92 cells identifies novel IFN-alpha and IL-15 target genes.
Journal of proteome research 2005;4(1):75-82.
2004: Kirsi J Rautajoki; Tuula A Nyman; Riitta Lahesmaa
Proteome characterization of human T helper 1 and 2 cells.
Proteomics 2004;4(1):84-92.
2003: Arsi T Rosengren; Jussi M Salmi; Tero Aittokallio; Jan Westerholm; Riitta Lahesmaa; Tuula A Nyman; Olli S Nevalainen
Comparison of PDQuest and Progenesis software packages in the analysis of two-dimensional electrophoresis gels.
Proteomics 2003;3(10):1936-46.
2002: Jorma Salmi; Tero Aittokallio; Jan Westerholm; Matias Griese; Arsi T Rosengren; Tuula A Nyman; Riitta Lahesmaa; Olli S Nevalainen
Hierarchical grid transformation for image warping in the analysis of two-dimensional electrophoresis gels.
Proteomics 2002;2(11):1504-15.
2001: Tuula A Nyman; Arsi T Rosengren; S Syyrakki; Teijo Pellinen; Kirsi J Rautajoki; Riitta Lahesmaa
A proteome database of human primary T helper cells.
Electrophoresis 2001;22(20):4375-82.
2001: Leni von Bonsdorff; H Tölö; Enni Lindeberg; Tuula A Nyman; A Harju; Jaakko Parkkinen
Development of a pharmaceutical apotransferrin product for iron binding therapy.
Biologicals : journal of the International Association of Biological Standardization 2001;29(1):27-37.
2001: Mika T Tarkka; Tuula A Nyman; Nisse Kalkkinen; Marjatta Raudaskoski
Scots pine expresses short-root-specific peroxidases during development.
European journal of biochemistry / FEBS 2001;268(1):86-92.
2000: M Oppermann; Neus Cols; Tuula A Nyman; Jari Helin; J Saarinen; I Byman; N Toran; Ayodele A Alaiya; Tomas Bergman; Nisse Kalkkinen; Roser Gonzàlez-Duarte; Hans Jörnvall
Identification of foetal brain proteins by two-dimensional gel electrophoresis and mass spectrometry comparison of samples from individuals with or without chromosome 21 trisomy.
European journal of biochemistry / FEBS 2000;267(15):4713-9.
2000: Tuula A Nyman; Sampsa Matikainen; Timo Sareneva; I Julkunen; Nisse Kalkkinen
Proteome analysis reveals ubiquitin-conjugating enzymes to be a new family of interferon-alpha-regulated genes.
European journal of biochemistry / FEBS 2000;267(13):4011-9.
1998: Tuula A Nyman; Nisse Kalkkinen; H Tölö; Jari Helin
Structural characterisation of N-linked and O-linked oligosaccharides derived from interferon-alpha2b and interferon-alpha14c produced by Sendai-virus-induced human peripheral blood leukocytes.
European journal of biochemistry / FEBS 1998;253(2):485-93.
1998: Tuula A Nyman; H Tölö; Jaakko Parkkinen; Nisse Kalkkinen
Identification of nine interferon-alpha subtypes produced by Sendai virus-induced human peripheral blood leucocytes.
The Biochemical journal 1998;329 ( Pt 2)():295-302.
1994: P Lukkari; Tuula A Nyman; Marja-Liisa Riekkola
Determination of nine beta-blockers in serum by micellar electrokinetic capillary chromatography.
Journal of chromatography. A 1994;674(1-2):241-6.