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Stephen O'Brien

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Marilyn Menotti-Raymond; Victor A David; Bruce S Weir; Stephen J O'Brien
A population genetic database of cat breeds developed in coordination with a domestic cat STR multiplex.
Sophie Limou; Matthieu Montes; Stephen J O'Brien; François Schachter; Hanneke Schuitemaker; Efe Sezgin; Jean-Louis Spadoni; Lieng Taing; Jennifer L Troyer; Leonard H van den Berg; Daniëlle van Manen; Mark L van Natta; Jan H Veldink; Cheryl A Winkler; Ping An; Susan Buchbinder; Cédric Coulonges; Olivier Delaneau; Jean-François Delfraissy; philippe froguel; Douglas A Jabs; Taoufik labib; Sigrid Le Clerc; Jean-François Zagury
Multicohort genomewide association study reveals a new signal of protection against HIV-1 acquisition.
Stephen J O'Brien; Agostinho Antunes; Meredith A Brown; Warren E Johnson; Melody E Roelke-Parker; Jennifer L Troyer; Jill Pecon-Slattery
Emerging viruses in the Felidae: shifting paradigms.

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All Publications

2012: Marilyn Menotti-Raymond; Victor A David; Bruce S Weir; Stephen J O'Brien
A population genetic database of cat breeds developed in coordination with a domestic cat STR multiplex.
Journal of forensic sciences 2012;57(3):596-601.
2012: Sophie Limou; Matthieu Montes; Stephen J O'Brien; François Schachter; Hanneke Schuitemaker; Efe Sezgin; Jean-Louis Spadoni; Lieng Taing; Jennifer L Troyer; Leonard H van den Berg; Daniëlle van Manen; Mark L van Natta; Jan H Veldink; Cheryl A Winkler; Ping An; Susan Buchbinder; Cédric Coulonges; Olivier Delaneau; Jean-François Delfraissy; philippe froguel; Douglas A Jabs; Taoufik labib; Sigrid Le Clerc; Jean-François Zagury
Multicohort genomewide association study reveals a new signal of protection against HIV-1 acquisition.
The Journal of infectious diseases 2012;205(7):1155-62.
2012: Stephen J O'Brien; Agostinho Antunes; Meredith A Brown; Warren E Johnson; Melody E Roelke-Parker; Jennifer L Troyer; Jill Pecon-Slattery
Emerging viruses in the Felidae: shifting paradigms.
Viruses 2012;4(2):236-57.
2011: Jennifer L Troyer; Craig Packer; Jill Pecon-Slattery; Melody E Roelke-Parker; Natalie Baggett; Valerie Buckley-Beason; Meggan Craft; Jillian M Jespersen; Dan MacNulty; Stephen J O'Brien
FIV diversity: FIV Ple subtype composition may influence disease outcome in African lions.
Veterinary immunology and immunopathology 2011;143(3-4):338-46.
2011: Ping An; Susan P Buchbinder; Sharyne Donfield; James J Goedert; Gregory D Kirk; Rongling Li; George W Nelson; Stephen J O'Brien; John Phair; Ram Samudralal; Efe Sezgin; Munehisa Takahashi; Jennifer L Troyer; Ji Ming Wang; Teizo Yoshimura; Cheryl A Winkler
Role of exonic variation in chemokine receptor genes on AIDS: CCRL2 F167Y association with pneumocystis pneumonia.
PLoS genetics 2011;7(10):e1002328.
2011: Efe Sezgin; Mark L van Natta; Alka Ahuja; Alice Lyon; Sunil Srivastava; Jennifer L Troyer; Stephen J O'Brien; Douglas A Jabs
Association of host genetic risk factors with the course of cytomegalovirus retinitis in patients infected with human immunodeficiency virus.
American journal of ophthalmology 2011;151(6):999-1006.e4.
2011: Jennifer L Troyer; George W Nelson; James Lautenberger; Leslie Chinn; Carl McIntosh; Randall C Johnson; Efe Sezgin; Bailey Kessing; Michael Malasky; Sher L Hendrickson; Guan Li; Joan U Pontius; Minzhong Tang; Ping An; Cheryl A Winkler; Sophie Limou; Sigrid Le Clerc; Olivier Delaneau; Jean-François Zagury; Hanneke Schuitemaker; Daniëlle van Manen; Jay H Bream; Edward D Gomperts; Susan Buchbinder; James J Goedert; Gregory D Kirk; Stephen J O'Brien
Genome-wide association study implicates PARD3B-based AIDS restriction.
The Journal of infectious diseases 2011;203(10):1491-502.
2011: Ping An; Cheryl Winkler; Li Guan; Stephen J O'Brien; Zheng Zeng
A common HLA-DPA1 variant is a major determinant of hepatitis B virus clearance in Han Chinese.
The Journal of infectious diseases 2011;203(7):943-7.
2011: Polina Perelman; Warren E Johnson; Christian Roos; Hector N Seuánez; Julie E Horvath; Miguel A M Moreira; Bailey Kessing; Joan Pontius; Melody E Roelke-Parker; Yves Rumpler; Maria Paula C Schneider; Artur Silva; Stephen J O'Brien; Jill Pecon-Slattery
A molecular phylogeny of living primates.
PLoS genetics 2011;7(3):e1001342.
2010: Marilyn Menotti-Raymond; Victor A David; S Pflueger; Melody E Roelke-Parker; James Kehler; Stephen J O'Brien; Kristina Narfström
Widespread retinal degenerative disease mutation (rdAc) discovered among a large number of popular cat breeds.
Veterinary journal (London, England : 1997) 2010;186(1):32-8.
2010: Warren E Johnson; David P Onorato; Melody E Roelke-Parker; E Darrell Land; Mark Cunningham; Robert C Belden; Roy McBride; Deborah Jansen; Mark Lotz; David Shindle; JoGayle Howard; David E Wildt; Linda M Penfold; Jeffrey A Hostetler; Madan K Oli; Stephen J O'Brien
Genetic restoration of the Florida panther.
Science (New York, N.Y.) 2010;329(5999):1641-5.
2010: Efe Sezgin; Alyssa Drosdak; Carl McIntosh; Bailey Kessing; James Lautenberger; James J Goedert; John P Phair; Jennifer L Troyer; Michael W Smith; Stephen J O'Brien
Examination of disease-based selection, demographic history and population structure in European Y-chromosome haplogroup I.
Journal of human genetics 2010;55(9):613-20.
2010: Efe Sezgin; Douglas A Jabs; Sher L Hendrickson; Mark Van Natta; Alexander Zdanov; Richard Alan Lewis; Michael W Smith; Jennifer L Troyer; Stephen J O'Brien
Effect of host genetics on the development of cytomegalovirus retinitis in patients with AIDS.
The Journal of infectious diseases 2010;202(4):606-13.
2010: Efe Sezgin; Sher L Hendrickson; Douglas A Jabs; Mark L Van Natta; Richard A Lewis; Jennifer L Troyer; Stephen J O'Brien
Effect of host genetics on incidence of HIV neuroretinal disorder in patients with AIDS.
Journal of acquired immune deficiency syndromes (1999) 2010;54(4):343-51.
2010: Marilyn Menotti-Raymond; Koren Holland Deckman; Victor David; Jaimie Myrkalo; Stephen J O'Brien; Kristina Narfström
Mutation discovered in a feline model of human congenital retinal blinding disease.
Investigative ophthalmology & visual science 2010;51(6):2852-9.
2010: Sher L Hendrickson; Douglas A Jabs; Mark Van Natta; Richard Alan Lewis; Douglas C Wallace; Stephen J O'Brien
Mitochondrial haplogroups are associated with risk of neuroretinal disorder in HIV-positive patients.
Journal of acquired immune deficiency syndromes (1999) 2010;53(4):451-5.
2010: Meredith A Brown; Bariushaa Munkhtsog; Jennifer L Troyer; Steve Ross; Rani S Sellers; Amanda E Fine; William F Swanson; Melody E Roelke-Parker; Stephen J O'Brien
Feline immunodeficiency virus (FIV) in wild Pallas' cats.
Veterinary immunology and immunopathology 2010;134(1-2):90-5.
2010: Taras K Oleksyk; Michael W Smith; Stephen J O'Brien
Genome-wide scans for footprints of natural selection.
Philosophical transactions of the Royal Society of London. Series B, Biological sciences 2010;365(1537):185-205.
2010: Sher L Hendrickson; James Lautenberger; Leslie Wei Chinn; Michael Malasky; Efe Sezgin; Lawrence A Kingsley; James J Goedert; Gregory D Kirk; Edward D Gomperts; Susan P Buchbinder; Jennifer L Troyer; Stephen J O'Brien
Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression.
PloS one 2010;5(9):e12862.
2010: Xiuchan Guo; Yi Zeng; Hong Deng; Jian Liao; Yuming Zheng; Ji Li; Bailey Kessing; Stephen J O'Brien
Genetic Polymorphisms of CYP2E1, GSTP1, NQO1 and MPO and the Risk of Nasopharyngeal Carcinoma in a Han Chinese Population of Southern China.
BMC research notes 2010;3():212.
2009: Meredith A Brown; Jennifer L Troyer; Jill Pecon-Slattery; Melody E Roelke-Parker; Stephen J O'Brien
Genetics and pathogenesis of feline infectious peritonitis virus.
Emerging infectious diseases 2009;15(9):1445-52.
2009: Melody E Roelke-Parker; Meredith A Brown; Jennifer L Troyer; Hanlie Winterbach; Christiaan Winterbach; Graham Hemson; Dahlem Smith; Randall C Johnson; Jill Pecon-Slattery; Alfred L Roca; Kathleen A Alexander; Lin Klein; Paolo Martelli; Karthiyani Krishnasamy; Stephen J O'Brien
Pathological manifestations of feline immunodeficiency virus (FIV) infection in wild African lions.
Virology 2009;390(1):1-12.
2009: Joan U Pontius; Stephen J O'Brien
Artifacts of the 1.9x feline genome assembly derived from the feline-specific satellite sequence.
The Journal of heredity 2009;100 Suppl 1():S14-8.
2009: Marilyn Menotti-Raymond; Victor A David; Eduardo Eizirik; Melody E Roelke-Parker; Helya Ghaffari; Stephen J O'Brien
Mapping of the domestic cat "SILVER" coat color locus identifies a unique genomic location for silver in mammals.
The Journal of heredity 2009;100 Suppl 1():S8-13.
2009: carlos driscoll; David W Macdonald; Stephen J O'Brien
From wild animals to domestic pets, an evolutionary view of domestication.
Proceedings of the National Academy of Sciences of the United States of America 2009;106 Suppl 1():9971-8.
2009: Xiuchan Guo; Randall C Johnson; Hong Deng; Jian Liao; Li Guan; George W Nelson; Mingzhong Tang; Yuming Zheng; Guy de The; Stephen J O'Brien; Cheryl A Winkler; Yi Zeng
Evaluation of nonviral risk factors for nasopharyngeal carcinoma in a high-risk population of Southern China.
International journal of cancer. Journal international du cancer 2009;124(12):2942-7.
2009: Sher L Hendrickson; Lawrence A Kingsley; Eduardo Ruiz-Pesini; Poole Jason; Lisa P Jacobson; Frank J Palella; Jay H Bream; Douglas C Wallace; Stephen J O'Brien
Mitochondrial DNA haplogroups influence lipoatrophy after highly active antiretroviral therapy.
Journal of acquired immune deficiency syndromes (1999) 2009;51(2):111-6.
2009: Taras K Oleksyk; Sadeep Shrestha; A L Truelove; James J Goedert; Sharyne Donfield; John Phair; Shruti Hemendra Mehta; Stephen J O'Brien; M W Smith
Extended IL10 haplotypes and their association with HIV progression to AIDS.
Genes and immunity 2009;10(4):309-22.
2009: Efe Sezgin; Joanne M Lind; Sadeep Shrestha; Sher Hendrickson; James J Goedert; Sharyne Donfield; Gregory D Kirk; John P Phair; Jennifer L Troyer; Stephen J O'Brien; Michael W Smith
Association of Y chromosome haplogroup I with HIV progression, and HAART outcome.
Human genetics 2009;125(3):281-94.
2009: Marilyn Menotti-Raymond; Victor A David; Alejandro A Schäffer; JF Tomlin; Eduardo Eizirik; Cornel Phillip; David Wells; Joan U Pontius; Steven S Hannah; Stephen J O'Brien
An autosomal genetic linkage map of the domestic cat, Felis silvestris catus.
Genomics 2009;93(4):305-13.
2009: Stephen J O'Brien
Comparative genomics in vertebrates: a role for the platypus. Introduction.
Reproduction, fertility, and development 2009;21(8):vii-ix.
2009: Stephen J O'Brien
Stewardship of human biospecimens, DNA, genotype, and clinical data in the GWAS era.
Annual review of genomics and human genetics 2009;10():193-209.
2009: carlos driscoll; Nobuyuki Yamaguchi; Gila Kahila Bar-Gal; Alfred L Roca; Shujin Luo; David W Macdonald; Stephen J O'Brien
Mitochondrial phylogeography illuminates the origin of the extinct caspian tiger and its relationship to the amur tiger.
PloS one 2009;4(1):e4125.
2008: Sher L Hendrickson; Holli B Hutcheson; Eduardo Ruiz-Pesini; Poole Jason; James Lautenberger; Efe Sezgin; Lawrence Kingsley; James J Goedert; David Vlahov; Sharyne Donfield; Douglas C Wallace; Stephen J O'Brien
Mitochondrial DNA haplogroups influence AIDS progression.
AIDS (London, England) 2008;22(18):2429-39.
2008: Agostinho Antunes; Jennifer L Troyer; Melody E Roelke-Parker; Jill Pecon-Slattery; Craig Packer; Christiaan Winterbach; Hanlie Winterbach; Graham Hemson; Laurence Frank; Philip Stander; Ludwig Siefert; Margaret Driciru; Paul J Funston; Kathy A Alexander; Katherine C Prager; Gus Mills; David Wildt; R BUSH; Stephen J O'Brien; Warren E Johnson
The evolutionary dynamics of the lion Panthera leo revealed by host and viral population genomics.
PLoS genetics 2008;4(11):e1000251.
2008: T C Trigo; T R O Freitas; G Kunzler; L Cardoso; J C R Silva; Warren E Johnson; Stephen J O'Brien; Sandro L Bonatto; Eduardo Eizirik
Inter-species hybridization among Neotropical cats of the genus Leopardus, and evidence for an introgressive hybrid zone between L. geoffroyi and L. tigrinus in southern Brazil.
Molecular ecology 2008;17(19):4317-33.
2008: Mark W Cunningham; Meredith A Brown; David B Shindle; Scott P Terrell; Kathleen A Hayes; Bambi C Ferree; R T McBride; Emmett L Blankenship; Deborah Jansen; Scott B Citino; Melody E Roelke-Parker; Richard A Kiltie; Jennifer L Troyer; Stephen J O'Brien
Epizootiology and management of feline leukemia virus in the Florida puma.
Journal of wildlife diseases 2008;44(3):537-52.
2008: Xiuchan Guo; Stephen J O'Brien; Yi Zeng; George W Nelson; Cheryl A Winkler
GSTM1 and GSTT1 gene deletions and the risk for nasopharyngeal carcinoma in Han Chinese.
Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 2008;17(7):1760-3.
2008: Sher L Hendrickson; Lisa P Jacobson; George W Nelson; John P Phair; James Lautenberger; Randall C Johnson; Lawrence Kingsley; Joseph B Margolick; Roger Detels; James J Goedert; Stephen J O'Brien
Host genetic influences on highly active antiretroviral therapy efficacy and AIDS-free survival.
Journal of acquired immune deficiency syndromes (1999) 2008;48(3):263-71.
2008: Stephen J O'Brien
The platypus genome unraveled.
Cell 2008;133(6):953-5.
2008: H B Hutcheson; J A Lautenberger; George W Nelson; Joan U Pontius; B D Kessing; Cheryl A Winkler; M W Smith; R Johnson; Robert Stephens; J Phair; James J Goedert; S Donfield; Stephen J O'Brien
Detecting AIDS restriction genes: from candidate genes to genome-wide association discovery.
Vaccine 2008;26(24):2951-65.
2008: Ann L Truelove; Taras K Oleksyk; Sadeep Shrestha; Chloe L Thio; James J Goedert; Sharyne M Donfield; Gregory D Kirk; David L Thomas; Stephen J O'Brien; Michael W Smith
Evaluation of IL10, IL19 and IL20 gene polymorphisms and chronic hepatitis B infection outcome.
International journal of immunogenetics 2008;35(3):255-64.
2008: Stephen J O'Brien; Warren Johnson; carlos driscoll; Joan U Pontius; Jill Pecon-Slattery; Marilyn Menotti-Raymond
State of cat genomics.
Trends in genetics : TIG 2008;24(6):268-79.
2008: Jill Pecon-Slattery; Jennifer L Troyer; Warren E Johnson; Stephen J O'Brien
Evolution of feline immunodeficiency virus in Felidae: implications for human health and wildlife ecology.
Veterinary immunology and immunopathology 2008;123(1-2):32-44.
2008: Jennifer L Troyer; Sue Vandewoude; Jill Pecon-Slattery; Carl McIntosh; Sam Franklin; Agostinho Antunes; Warren Johnson; Stephen J O'Brien
FIV cross-species transmission: an evolutionary prospective.
Veterinary immunology and immunopathology 2008;123(1-2):159-66.
2008: William G Nash; Joan C Menninger; Hesed Padilla-Nash; Gary Stone; Polina L Perelman; Stephen J O'Brien
The ancestral carnivore karyotype (2n = 38) lives today in ringtails.
The Journal of heredity 2008;99(3):241-53.
2008: Shu-Jin Luo; Warren E Johnson; Janice Martenson; Agostinho Antunes; Paolo Martelli; Olga Uphyrkina; Kathy Traylor-Holzer; James L D Smith; Stephen J O'Brien
Subspecies genetic assignments of worldwide captive tigers increase conservation value of captive populations.
Current biology : CB 2008;18(8):592-6.
2008: Naoya Yuhki; James C Mullikin; Thomas Beck; Robert Stephens; Stephen J O'Brien
Sequences, annotation and single nucleotide polymorphism of the major histocompatibility complex in the domestic cat.
PloS one 2008;3(7):e2674.
2008: Taras K Oleksyk; Kai Zhao; Francisco M De La Vega; Dennis A Gilbert; Stephen J O'Brien; Michael W Smith
Identifying selected regions from heterozygosity and divergence using a light-coverage genomic dataset from two human populations.
PloS one 2008;3(3):e1712.
2008: Jill Pecon-Slattery; Carrie L McCracken; Jennifer L Troyer; Sue VandeWoude; Melody E Roelke-Parker; Kerry Sondgeroth; Christiaan Winterbach; Hanlie Winterbach; Stephen J O'Brien
Genomic organization, sequence divergence, and recombination of feline immunodeficiency virus from lions in the wild.
BMC genomics 2008;9():66.
2008: Laurie L Marker; Alison J Pearks Wilkerson; Ronald J Sarno; Janice Martenson; Christian Breitenmoser-Würsten; Stephen J O'Brien; Warren E Johnson
Molecular genetic insights on cheetah (Acinonyx jubatus) ecology and conservation in Namibia.
The Journal of heredity 2008;99(1):2-13.
2008: Marilyn Menotti-Raymond; Victor A David; Solveig M Pflueger; Kerstin Lindblad-Toh; Claire M Wade; Stephen J O'Brien; Warren E Johnson
Patterns of molecular genetic variation among cat breeds.
Genomics 2008;91(1):1-11.
2007: Joan U Pontius; James C Mullikin; Douglas R Smith; Kerstin Lindblad-Toh; Sante Gnerre; Michele Clamp; Jean Chang; Robert Stephens; Beena Neelam; Natalia Volfovsky; Alejandro A Schäffer; Richa Agarwala; Kristina Narfström; William J Murphy; Urs Giger; Alfred L Roca; Agostinho Antunes; Marilyn Menotti-Raymond; Naoya Yuhki; Jill Pecon-Slattery; Warren E Johnson; Guillaume Bourque; Glenn Tesler; Stephen J O'Brien
Initial sequence and comparative analysis of the cat genome.
Genome research 2007;17(11):1675-89.
2007: Maureen P Martin; Véronique Pascal; Meredith Yeager; John Phair; Gregory D Kirk; Keith Hoots; Stephen J O'Brien; Stephen K Anderson; Mary Carrington
A mutation in KIR3DS1 that results in truncation and lack of cell surface expression.
Immunogenetics 2007;59(10):823-9.
2007: James S Kehler; Victor A David; Alejandro A Schäffer; Kristina Bajema; Eduardo Eizirik; David Ryugo; Steven S Hannah; Stephen J O'Brien; Marilyn Menotti-Raymond
Four independent mutations in the feline fibroblast growth factor 5 gene determine the long-haired phenotype in domestic cats.
The Journal of heredity 2007;98(6):555-66.
2007: Nikia Coomber; Victor A David; Stephen J O'Brien; Marilyn Menotti-Raymond
Validation of a short tandem repeat multiplex typing system for genetic individualization of domestic cat samples.
Croatian medical journal 2007;48(4):547-55.
2007: Mark S Springer; Angela Burk-Herrick; Robert Meredith; Eduardo Eizirik; Emma C Teeling; Stephen J O'Brien; William J Murphy
The adequacy of morphology for reconstructing the early history of placental mammals.
Systematic biology 2007;56(4):673-84.
2007: Núria Vàzquez-Salat; Naoya Yuhki; Thomas Beck; Stephen J O'Brien; William J Murphy
Gene conversion between mammalian CCR2 and CCR5 chemokine receptor genes: a potential mechanism for receptor dimerization.
Genomics 2007;90(2):213-24.
2007: carlos driscoll; Marilyn Menotti-Raymond; Alfred L Roca; Karsten Hupe; Warren E Johnson; Eli Geffen; Eric Harley; Miguel Delibes; Dominique Pontier; Andrew C Kitchener; Nobuyuki Yamaguchi; Stephen J O'Brien; David W Macdonald
The Near Eastern origin of cat domestication.
Science (New York, N.Y.) 2007;317(5837):519-23.
2007: Stephen J O'Brien; Warren E Johnson
The evolution of cats. Genomic paw prints in the DNA of the world's wild cats have clarified the cat family tree and uncovered several remarkable migrations in their past.
Scientific American 2007;297(1):68-75.
2007: Cassandra M Miller-Butterworth; William J Murphy; Stephen J O'Brien; David S Jacobs; Mark S Springer; Emma C Teeling
A family matter: conclusive resolution of the taxonomic position of the long-fingered bats, miniopterus.
Molecular biology and evolution 2007;24(7):1553-61.
2007: Ping An; Li Hua Wang; Holli Hutcheson-Dilks; George Nelson; Sharyne Donfield; James J Goedert; Charles Rinaldo; Susan Buchbinder; Gregory D Kirk; Stephen J O'Brien; Cheryl A Winkler
Regulatory polymorphisms in the cyclophilin A gene, PPIA, accelerate progression to AIDS.
PLoS pathogens 2007;3(6):e88.
2007: Maureen P Martin; Ying Qi; Xiaojiang Gao; Eriko Yamada; Jeffrey N Martin; Florencia Pereyra; Sara Colombo; Elizabeth E Brown; W Lesley Shupert; John Phair; James J Goedert; Susan Buchbinder; Gregory D Kirk; Amalio Telenti; Mark Connors; Stephen J O'Brien; Bruce D Walker; Peter Parham; Steven G Deeks; Daniel W McVicar; Mary Carrington
Innate partnership of HLA-B and KIR3DL1 subtypes against HIV-1.
Nature genetics 2007;39(6):733-40.
2007: Marilyn Menotti-Raymond; Victor A David; Alejandro A Schäffer; Robert Stephens; David Wells; Rajendra Kumar-Singh; Stephen J O'Brien; Kristina Narfström
Mutation in CEP290 discovered for cat model of human retinal degeneration.
The Journal of heredity 2007;98(3):211-20.
2007: V King; PN Goodfellow; Alison J Pearks Wilkerson; Warren E Johnson; Stephen J O'Brien; Jill Pecon-Slattery
Evolution of the male-determining gene SRY within the cat family Felidae.
Genetics 2007;175(4):1855-67.
2007: William J Murphy; Brian Davis; Victor A David; Richa Agarwala; Alejandro A Schäffer; Alison J Pearks Wilkerson; Beena Neelam; Stephen J O'Brien; Marilyn Menotti-Raymond
A 1.5-Mb-resolution radiation hybrid map of the cat genome and comparative analysis with the canine and human genomes.
Genomics 2007;89(2):189-96.
2007: Ping An; Priya Duggal; Li Hua Wang; Stephen J O'Brien; Sharyne Donfield; James J Goedert; John Phair; Susan Buchbinder; Gregory D Kirk; Cheryl A Winkler
Polymorphisms of CUL5 are associated with CD4+ T cell loss in HIV-1 infected individuals.
PLoS genetics 2007;3(1):e19.
2007: Tania M Welzel; Xiaojiang Gao; Ruth M Pfeiffer; Maureen P Martin; Stephen J O'Brien; James J Goedert; Mary Carrington; Thomas R O'Brien
HLA-B Bw4 alleles and HIV-1 transmission in heterosexual couples.
AIDS (London, England) 2007;21(2):225-9.
2007: William J Murphy; Stephen J O'Brien
Designing and optimizing comparative anchor primers for comparative gene mapping and phylogenetic inference.
Nature protocols 2007;2(11):3022-30.
2007: Naoya Yuhki; Thomas Beck; Robert Stephens; Beena Neelam; Stephen J O'Brien
Comparative genomic structure of human, dog, and cat MHC: HLA, DLA, and FLA.
The Journal of heredity 2007;98(5):390-9.
2007: Agostinho Antunes; Joan U Pontius; Maria João Ramos; Stephen J O'Brien; Warren E Johnson
Mitochondrial introgressions into the nuclear genome of the domestic cat.
The Journal of heredity 2007;98(5):414-20.
2007: Joan U Pontius; Stephen J O'Brien
Genome Annotation Resource Fields--GARFIELD: a genome browser for Felis catus.
The Journal of heredity 2007;98(5):386-9.
2007: Shu-Jin Luo; Warren E Johnson; Victor A David; Marilyn Menotti-Raymond; Roscoe Stanyon; Qing Xiu Cai; Thomas Beck; Naoya Yuhki; Jill Pecon-Slattery; James L D Smith; Stephen J O'Brien
Development of Y chromosome intraspecific polymorphic markers in the Felidae.
The Journal of heredity 2007;98(5):400-13.
2007: Chloe L Thio; Jacquie Astemborski; Arman Bashirova; Timothy Mosbruger; Spencer Greer; Mallory D Witt; James J Goedert; Margaret W Hilgartner; Audrey Majeske; Stephen J O'Brien; David L Thomas; Mary Carrington
Genetic protection against hepatitis B virus conferred by CCR5Delta32: Evidence that CCR5 contributes to viral persistence.
Journal of virology 2007;81(2):441-5.
2007: Joanne M Lind; Holli B Hutcheson-Dilks; scott williams; Jason Moore; Myron Essex; Eduardo Ruiz-Pesini; Douglas C Wallace; Sarah A Tishkoff; Stephen J O'Brien; Michael W Smith
Elevated male European and female African contributions to the genomes of African American individuals.
Human genetics 2007;120(5):713-22.
2006: Valerie A Buckley-Beason; Warren E Johnson; William G Nash; Roscoe Stanyon; Joan C Menninger; carlos driscoll; JoGayle Howard; R BUSH; John E Page; Melody E Roelke-Parker; Gary Stone; Paolo P Martelli; Ci Wen; Lin Ling; Ratna K Duraisingam; Phan V Lam; Stephen J O'Brien
Molecular evidence for species-level distinctions in clouded leopards.
Current biology : CB 2006;16(23):2371-6.
2006: Yasuko Ishida; Victor A David; Eduardo Eizirik; Alejandro A Schäffer; Beena Neelam; Melody E Roelke-Parker; Steven S Hannah; Stephen J O'Brien; Marilyn Menotti-Raymond
A homozygous single-base deletion in MLPH causes the dilute coat color phenotype in the domestic cat.
Genomics 2006;88(6):698-705.
2006: Hassan Javanbakht; Ping An; Bert Gold; Desiree C Petersen; Colm O'hUigin; George W Nelson; Stephen J O'Brien; Gregory D Kirk; Roger Detels; Susan Buchbinder; Sharyne Donfield; Sergey Shulenin; Byeongwoon Song; Michel Perron; Matthew Stremlau; Joseph Sodroski; Michael Dean; Cheryl A Winkler
Effects of human TRIM5alpha polymorphisms on antiretroviral function and susceptibility to human immunodeficiency virus infection.
Virology 2006;354(1):15-27.
2006: Ying Qi; Maureen P Martin; Xiaojiang Gao; Lisa P Jacobson; James J Goedert; Susan Buchbinder; Gregory D Kirk; Stephen J O'Brien; John Trowsdale; Mary Carrington
KIR/HLA pleiotropism: protection against both HIV and opportunistic infections.
PLoS pathogens 2006;2(8):e79.
2006: Cristian Capelli; Ross D E MacPhee; Alfred L Roca; Francesca Brisighelli; Nicholas Georgiadis; Stephen J O'Brien; Alex D Greenwood
A nuclear DNA phylogeny of the woolly mammoth (Mammuthus primigenius).
Molecular phylogenetics and evolution 2006;40(2):620-7.
2006: Xiu-chan Guo; Stephen J O'Brien; Cheryl A Winkler; Kevin Scott; Holli Hutcheson; Victor David; Bailey Kessing; Yu-Ming Zheng; Jian Liao; Yan Lui; de The Guy; Yi Zeng
[Association study of chromosome 4 STRs polymorphisms with nasopharyngeal carcinoma].
Yi chuan = Hereditas / Zhongguo yi chuan xue hui bian ji 2006;28(7):783-90.
2006: Arman Bashirova; Gabriela Bleiber; Ying Qi; Holli B Hutcheson; Traci Yamashita; Randall C Johnson; Jie Cheng; Galit Alter; James J Goedert; Susan Buchbinder; Keith Hoots; David Vlahov; Margaret May; Frank Maldarelli; Lisa P Jacobson; Stephen J O'Brien; Amalio Telenti; Mary Carrington
Consistent effects of TSG101 genetic variability on multiple outcomes of exposure to human immunodeficiency virus type 1.
Journal of virology 2006;80(14):6757-63.
2006: William S Modi; James Lautenberger; Ping An; Kevin Scott; James J Goedert; Gregory D Kirk; Susan Buchbinder; John Phair; Sharyne Donfield; Stephen J O'Brien; Cheryl A Winkler
Genetic variation in the CCL18-CCL3-CCL4 chemokine gene cluster influences HIV Type 1 transmission and AIDS disease progression.
American journal of human genetics 2006;79(1):120-8.
2006: Xiu-chan Guo; Kevin Scott; Yan Liu; Michael Dean; Victor David; George W Nelson; Randall C Johnson; Holli H Dilks; James Lautenberger; Bailey Kessing; Janice Martenson; Li Guan; Shan Sun; Hong Deng; Yuming Zheng; Guy de The; Jian Liao; Yi Zeng; Stephen J O'Brien; Cheryl A Winkler
Genetic factors leading to chronic Epstein-Barr virus infection and nasopharyngeal carcinoma in South East China: study design, methods and feasibility.
Human genomics 2006;2(6):365-75.
2006: Melody E Roelke-Parker; Jill Pecon-Slattery; S Taylor; S Citino; Elizabeth E Brown; C Packer; Sue VandeWoude; Stephen J O'Brien
T-lymphocyte profiles in FIV-infected wild lions and pumas reveal CD4 depletion.
Journal of wildlife diseases 2006;42(2):234-48.
2006: Xiaojiang Gao; Richard M Single; Peter Karacki; Darlene Marti; Stephen J O'Brien; Mary Carrington
Diversity of MICA and linkage disequilibrium with HLA-B in two North American populations.
Human immunology 2006;67(3):152-8.
2006: Jae-Heup Kim; Agostinho Antunes; Shu-Jin Luo; Joan C Menninger; William G Nash; Stephen J O'Brien; Warren E Johnson
Evolutionary analysis of a large mtDNA translocation (numt) into the nuclear genome of the Panthera genus species.
Gene 2006;366(2):292-302.
2006: Warren E Johnson; Eduardo Eizirik; Jill Pecon-Slattery; William J Murphy; Agostinho Antunes; Emma C Teeling; Stephen J O'Brien
The late Miocene radiation of modern Felidae: a genetic assessment.
Science (New York, N.Y.) 2006;311(5757):73-7.
2006: Sadeep Shrestha; Steffanie A Strathdee; Noya Galai; Taras Oleksyk; MARGARET D FALLIN; Shruti Hemendra Mehta; Daniel J Schaid; David Vlahov; Stephen J O'Brien; Michael W Smith
Behavioral risk exposure and host genetics of susceptibility to HIV-1 infection.
The Journal of infectious diseases 2006;193(1):16-26.
2005: Xiaojiang Gao; Arman Bashirova; Astrid K N Iversen; John Phair; James J Goedert; Susan Buchbinder; Keith Hoots; David Vlahov; Marcus Altfeld; Stephen J O'Brien; Mary Carrington
AIDS restriction HLA allotypes target distinct intervals of HIV-1 pathogenesis.
Nature medicine 2005;11(12):1290-2.
2005: Alfred L Roca; Stephen J O'Brien
Genomic inferences from Afrotheria and the evolution of elephants.
Current opinion in genetics & development 2005;15(6):652-9.
2005: William S Modi; Kevin Scott; James J Goedert; David Vlahov; Susan Buchbinder; Roger Detels; Sharyne Donfield; Stephen J O'Brien; Cheryl A Winkler
Haplotype analysis of the SDF-1 (CXCL12) gene in a longitudinal HIV-1/AIDS cohort study.
Genes and immunity 2005;6(8):691-8.
2005: Marilyn Menotti-Raymond; Victor A David; Leslie L Wachter; John M Butler; Stephen J O'Brien
An STR forensic typing system for genetic individualization of domestic cat (Felis catus) samples.
Journal of forensic sciences 2005;50(5):1061-70.
2005: Michael W Smith; Stephen J O'Brien
Mapping by admixture linkage disequilibrium: advances, limitations and guidelines.
Nature reviews. Genetics 2005;6(8):623-32.
2005: William J Murphy; Denis M Larkin; Annelie Everts-van der Wind; Guillaume Bourque; Glenn Tesler; Loretta Auvil; Jonathan E Beever; Bhanu P Chowdhary; Francis Galibert; Lisa Gatzke; Christophe Hitte; Stacey N Meyers; Denis Milan; Elaine A Ostrander; Greg Pape; Heidi G Parker; Terje Raudsepp; Margarita B Rogatcheva; Lawrence B Schook; Loren C Skow; Michael Welge; James E Womack; Stephen J O'Brien; Pavel A Pevzner; Harris Lewin
Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps.
Science (New York, N.Y.) 2005;309(5734):613-7.
2005: Chloe L Thio; Timothy Mosbruger; Jacquie Astemborski; Spencer Greer; Gregory D Kirk; Stephen J O'Brien; David L Thomas
Mannose binding lectin genotypes influence recovery from hepatitis B virus infection.
Journal of virology 2005;79(14):9192-6.
2005: Jennifer L Troyer; Jill Pecon-Slattery; Melody E Roelke-Parker; Warren Johnson; Sue VandeWoude; Nuria Vazquez-Salat; Meredith Brown; Laurence Frank; Rosie Woodroffe; Christiaan Winterbach; Hanlie Winterbach; Graham Hemson; R BUSH; Kathleen A Alexander; Eloy Revilla; Stephen J O'Brien
Seroprevalence and genomic divergence of circulating strains of feline immunodeficiency virus among Felidae and Hyaenidae species.
Journal of virology 2005;79(13):8282-94.
2005: Taras Oleksyk; Chloe L Thio; A L Truelove; James J Goedert; Sharyne Donfield; Gregory D Kirk; David L Thomas; Stephen J O'Brien; Michael W Smith
Single nucleotide polymorphisms and haplotypes in the IL10 region associated with HCV clearance.
Genes and immunity 2005;6(4):347-57.
2005: Priya Duggal; Cheryl A Winkler; Ping An; XIAOFANG YU; Homayoon Farzadegan; Stephen J O'Brien; Terri H beaty; David Vlahov
The effect of RANTES chemokine genetic variants on early HIV-1 plasma RNA among African American injection drug users.
Journal of acquired immune deficiency syndromes (1999) 2005;38(5):584-9.
2005: Alfred L Roca; William G Nash; Joan C Menninger; William J Murphy; Stephen J O'Brien
Insertional polymorphisms of endogenous feline leukemia viruses.
Journal of virology 2005;79(7):3979-86.
2005: Emma C Teeling; Mark S Springer; Ole Madsen; Paul Bates; Stephen J O'Brien; William J Murphy
A molecular phylogeny for bats illuminates biogeography and the fossil record.
Science (New York, N.Y.) 2005;307(5709):580-4.
2005: Stephen J O'Brien; Warren E Johnson
Big cat genomics.
Annual review of genomics and human genetics 2005;6():407-29.
2005: Thomas W Beck; Joan C Menninger; William J Murphy; William G Nash; Stephen J O'Brien; Naoya Yuhki
The feline major histocompatibility complex is rearranged by an inversion with a breakpoint in the distal class I region.
Immunogenetics 2005;56(10):702-9.
2005: Alfred L Roca; Nicholas Georgiadis; Stephen J O'Brien
Cytonuclear genomic dissociation in African elephant species.
Nature genetics 2005;37(1):96-100.
2004: Stephen J O'Brien
Cats.
Current biology : CB 2004;14(23):R988-9.
2004: Shu-Jin Luo; Jae-Heup Kim; Warren E Johnson; Joelle van der Walt; Janice Martenson; Naoya Yuhki; Dale G Miquelle; Olga Uphyrkina; John M Goodrich; Howard B Quigley; Ronald Tilson; Gerald Brady; Paolo Martelli; Vellayan Subramaniam; Charles McDougal; Sun Hean; Shi-Qiang Huang; Wenshi Pan; Ullas K Karanth; Melvin Sunquist; James L D Smith; Stephen J O'Brien
Phylogeography and genetic ancestry of tigers (Panthera tigris).
PLoS biology 2004;2(12):e442.
2004: Maureen P Martin; Michael M Lederman; Holli B Hutcheson; James J Goedert; George W Nelson; Yvette van Kooyk; Roger Detels; Susan Buchbinder; Keith Hoots; David Vlahov; Stephen J O'Brien; Mary Carrington
Association of DC-SIGN promoter polymorphism with increased risk for parenteral, but not mucosal, acquisition of human immunodeficiency virus type 1 infection.
Journal of virology 2004;78(24):14053-6.
2004: Jill Pecon-Slattery; Alison J Pearks Wilkerson; William J Murphy; Stephen J O'Brien
Phylogenetic assessment of introns and SINEs within the Y chromosome using the cat family felidae as a species tree.
Molecular biology and evolution 2004;21(12):2299-309.
2004: Chloe L Thio; Timothy Mosbruger; Richard A Kaslow; Christopher L Karp; Steffanie A Strathdee; David Vlahov; Stephen J O'Brien; Jacquie Astemborski; David L Thomas
Cytotoxic T-lymphocyte antigen 4 gene and recovery from hepatitis B virus infection.
Journal of virology 2004;78(20):11258-62.
2004: Ping An; Gabriela Bleiber; Priya Duggal; George Nelson; Margaret May; Bastien Mangeat; Irene Alobwede; Didier Trono; David Vlahov; Sharyne Donfield; James J Goedert; John Phair; Susan Buchbinder; Stephen J O'Brien; Amalio Telenti; Cheryl A Winkler
APOBEC3G genetic variants and their influence on the progression to AIDS.
Journal of virology 2004;78(20):11070-6.
2004: Alfred L Roca; Gila Kahila Bar-Gal; Eduardo Eizirik; Kristofer M Helgen; Roberto Maria; Mark S Springer; Stephen J O'Brien; William J Murphy
Mesozoic origin for West Indian insectivores.
Nature 2004;429(6992):649-51.
2004: Taras Oleksyk; Lev G Goldfarb; T Sivtseva; Al'bina P Danilova; V L Osakovsky; Sadeep Shrestha; Stephen J O'Brien; Michael W Smith
Evaluating association and transmission of eight inflammatory genes with Viliuisk encephalomyelitis susceptibility.
European journal of immunogenetics : official journal of the British Society for Histocompatibility and Immunogenetics 2004;31(3):121-8.
2004: Stephen J O'Brien; George W Nelson
Human genes that limit AIDS.
Nature genetics 2004;36(6):565-74.
2004: Chloe L Thio; James J Goedert; Timothy Mosbruger; David Vlahov; Steffanie A Strathdee; Stephen J O'Brien; Jacquie Astemborski; David L Thomas
An analysis of tumor necrosis factor alpha gene polymorphisms and haplotypes with natural clearance of hepatitis C virus infection.
Genes and immunity 2004;5(4):294-300.
2004: Peter Karacki; Xiaojiang Gao; Chloe L Thio; David L Thomas; James J Goedert; David Vlahov; Richard A Kaslow; Steffanie A Strathdee; Margaret W Hilgartner; Stephen J O'Brien; Mary Carrington
MICA and recovery from hepatitis C virus and hepatitis B virus infections.
Genes and immunity 2004;5(4):261-6.
2004: Sophie Molia; Bruno B Chomel; Rickie W Kasten; Christian M Leutenegger; B R Steele; Laurie Marker; Janice S Martenson; Dewald F Keet; Roy G Bengis; R P Peterson; Linda Munson; Stephen J O'Brien
Prevalence of Bartonella infection in wild African lions (Panthera leo) and cheetahs (Acinonyx jubatus).
Veterinary microbiology 2004;100(1-2):31-41.
2004: Alfred L Roca; Jill Pecon-Slattery; Stephen J O'Brien
Genomically intact endogenous feline leukemia viruses of recent origin.
Journal of virology 2004;78(8):4370-5.
2004: Jennifer L Troyer; Jill Pecon-Slattery; Melody E Roelke-Parker; Lori Black; Craig Packer; Stephen J O'Brien
Patterns of feline immunodeficiency virus multiple infection and genome divergence in a free-ranging population of African lions.
Journal of virology 2004;78(7):3777-91.
2004: Cheryl A Winkler; Ping An; Stephen J O'Brien
Patterns of ethnic diversity among the genes that influence AIDS.
Human molecular genetics 2004;13 Spec No 1():R9-19.
2004: Alison J Pearks Wilkerson; Emma C Teeling; Jennifer L Troyer; Gila Kahila Bar-Gal; Melody E Roelke-Parker; Laurie Marker; Jill Pecon-Slattery; Stephen J O'Brien
Coronavirus outbreak in cheetahs: lessons for SARS.
Current biology : CB 2004;14(6):R227-8.
2004: Bruno B Chomel; Yoko Kikuchi; Janice S Martenson; Melody E Roelke-Parker; Chao-Chin Chang; Rickie W Kasten; Janet E Foley; John Laudre; Kerry Murphy; Pamela K Swift; Vicki L Kramer; Stephen J O'Brien
Seroprevalence of Bartonella infection in American free-ranging and captive pumas (Felis concolor) and bobcats (Lynx rufus).
Veterinary research 2004;35(2):233-41.
2004: Yoko Kikuchi; Bruno B Chomel; Rickie W Kasten; Janice S Martenson; Pamela K Swift; Stephen J O'Brien
Seroprevalence of Toxoplasma gondii in American free-ranging or captive pumas (Felis concolor) and bobcats (Lynx rufus).
Veterinary parasitology 2004;120(1-2):1-9.
2004: Linda Munson; Laurie Marker; Edward J Dubovi; Jennifer A Spencer; James F Evermann; Stephen J O'Brien
Serosurvey of viral infections in free-ranging Namibian cheetahs (Acinonyx jubatus).
Journal of wildlife diseases 2004;40(1):23-31.
2004: Warren E Johnson; José Antonio Godoy; Francisco Palomares; Miguel Delibes; M Fernandes; Eloy Revilla; Stephen J O'Brien
Phylogenetic and phylogeographic analysis of Iberian lynx populations.
The Journal of heredity 2004;95(1):19-28.
2003: William S Modi; James J Goedert; Steffanie A Strathdee; Susan Buchbinder; Roger Detels; Sharyne Donfield; Stephen J O'Brien; Cheryl A Winkler
MCP-1-MCP-3-Eotaxin gene cluster influences HIV-1 transmission.
AIDS (London, England) 2003;17(16):2357-65.
2003: William J Murphy; Guillaume Bourque; Glenn Tesler; Pavel A Pevzner; Stephen J O'Brien
Reconstructing the genomic architecture of mammalian ancestors using multispecies comparative maps.
Human genomics 2003;1(1):30-40.
2003: Ruth R Faden; Liza Dawson; Alison S Bateman-House; Dawn Mueller Agnew; Hilary Bok; Dan W Brock; Aravinda Chakravarti; Xiao-Jiang Gao; Mark Greene; John A Hansen; Patricia A King; Stephen J O'Brien; David H Sachs; Kathryn E Schill; Andrew Siegel; Davor Solter; Sonia M Suter; Catherine M Verfaillie; LeRoy B Walters; John D Gearhart
Public stem cell banks: considerations of justice in stem cell research and therapy.
The Hastings Center report 2003;33(6):13-27.
2003: Liza Dawson; Alison S Bateman-House; Dawn Mueller Agnew; Hilary Bok; Dan W Brock; Aravinda Chakravarti; Mark Greene; Patricia A King; Stephen J O'Brien; David H Sachs; Kathryn E Schill; Andrew Siegel; Davor Solter; Sonia M Suter; Catherine M Verfaillie; LeRoy B Walters; John D Gearhart; Ruth R Faden
Safety issues in cell-based intervention trials.
Fertility and sterility 2003;80(5):1077-85.
2003: Chloe L Thio; David L Thomas; Peter Karacki; Xiaojiang Gao; Darlene Marti; Richard A Kaslow; James J Goedert; Margaret W Hilgartner; Steffanie A Strathdee; Priya Duggal; Stephen J O'Brien; Jacquie Astemborski; Mary Carrington
Comprehensive analysis of class I and class II HLA antigens and chronic hepatitis B virus infection.
Journal of virology 2003;77(22):12083-7.
2003: Stephen J O'Brien; William J Murphy
Genomics. A dog's breakfast?
Science (New York, N.Y.) 2003;301(5641):1854-5.
2003: Olga Uphyrkina; Stephen J O'Brien
Applying molecular genetic tools to the conservation and action plan for the critically endangered Far Eastern leopard (Panthera pardus orientalis).
Comptes rendus biologies 2003;326 Suppl 1():S93-7.
2003: Emma C Teeling; Ole Madsen; William J Murphy; Mark S Springer; Stephen J O'Brien
Nuclear gene sequences confirm an ancient link between New Zealand's short-tailed bat and South American noctilionoid bats.
Molecular phylogenetics and evolution 2003;28(2):308-19.
2003: William J Murphy; Lutz Frönicke; Stephen J O'Brien; Roscoe Stanyon
The origin of human chromosome 1 and its homologs in placental mammals.
Genome research 2003;13(8):1880-8.
2003: Ping An; David Vlahov; Joseph B Margolick; John Phair; Thomas R O'Brien; James Lautenberger; Stephen J O'Brien; Cheryl A Winkler
A tumor necrosis factor-alpha-inducible promoter variant of interferon-gamma accelerates CD4+ T cell depletion in human immunodeficiency virus-1-infected individuals.
The Journal of infectious diseases 2003;188(2):228-31.
2003: Marilyn Menotti-Raymond; Victor A David; Leslie Wachter; Naoya Yuhki; Stephen J O'Brien
Quantitative polymerase chain reaction-based assay for estimating DNA yield extracted from domestic cat specimens.
Croatian medical journal 2003;44(3):327-31.
2003: Priya Duggal; Ping An; Terri H beaty; Steffanie A Strathdee; Homayoon Farzadegan; Richard B Markham; LISETTE JOHNSON-HILL; Stephen J O'Brien; David Vlahov; Cheryl A Winkler
Genetic influence of CXCR6 chemokine receptor alleles on PCP-mediated AIDS progression among African Americans.
Genes and immunity 2003;4(4):245-50.
2003: Naoya Yuhki; Thomas Beck; Robert M Stephens; Yoko Nishigaki; Kymberly Newmann; Stephen J O'Brien
Comparative genome organization of human, murine, and feline MHC class II region.
Genome research 2003;13(6A):1169-79.
2003: William S Modi; Thomas R O'Brien; David Vlahov; Susan Buchbinder; Edward D Gomperts; John Phair; Stephen J O'Brien; Cheryl A Winkler
Haplotype diversity in the interleukin-4 gene is not associated with HIV-1 transmission and AIDS progression.
Immunogenetics 2003;55(3):157-64.
2003: Eduardo Eizirik; Naoya Yuhki; Warren E Johnson; Marilyn Menotti-Raymond; Steven S Hannah; Stephen J O'Brien
Molecular genetics and evolution of melanism in the cat family.
Current biology : CB 2003;13(5):448-53.
2003: Mark S Springer; William J Murphy; Eduardo Eizirik; Stephen J O'Brien
Placental mammal diversification and the Cretaceous-Tertiary boundary.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(3):1056-61.
2003: Marilyn Menotti-Raymond; Victor A David; Richa Agarwala; Alejandro A Schäffer; R Stephens; Stephen J O'Brien; William J Murphy
Radiation hybrid mapping of 304 novel microsatellites in the domestic cat genome.
Cytogenetic and genome research 2003;102(1-4):272-6.
2003: Marilyn Menotti-Raymond; Victor A David; Melody E Roelke-Parker; Z Q Chen; K A Menotti; S Sun; Alejandro A Schäffer; JF Tomlin; Richa Agarwala; Stephen J O'Brien; William J Murphy
Second-generation integrated genetic linkage/radiation hybrid maps of the domestic cat (Felis catus).
The Journal of heredity 2003;94(1):95-106.
2002: Kenine Comstock; Nicholas Georgiadis; Jill Pecon-Slattery; Alfred L Roca; Elaine A Ostrander; Stephen J O'Brien; Samuel K Wasser
Patterns of molecular genetic variation among African elephant populations.
Molecular ecology 2002;11(12):2489-98.
2002: Francisco Palomares; José Antonio Godoy; A Piriz; Stephen J O'Brien
Faecal genetic analysis to determine the presence and distribution of elusive carnivores: design and feasibility for the Iberian lynx.
Molecular ecology 2002;11(10):2171-82.
2002: Olga Uphyrkina; Dale G Miquelle; Howard B Quigley; carlos driscoll; Stephen J O'Brien
Conservation genetics of the Far Eastern leopard (Panthera pardus orientalis).
The Journal of heredity 2002;93(5):303-11.
2002: Maureen P Martin; Xiaojiang Gao; Jeong-Hee Lee; George W Nelson; Roger Detels; James J Goedert; Susan Buchbinder; Keith Hoots; David Vlahov; John Trowsdale; Michael Wilson; Stephen J O'Brien; Mary Carrington
Epistatic interaction between KIR3DS1 and HLA-B delays the progression to AIDS.
Nature genetics 2002;31(4):429-34.
2002: Ping An; George W Nelson; Lihua Wang; Sharyne Donfield; James J Goedert; John Phair; David Vlahov; Susan Buchbinder; William L Farrar; William S Modi; Stephen J O'Brien; Cheryl A Winkler
Modulating influence on HIV/AIDS by interacting RANTES gene variants.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(15):10002-7.
2002: Chloe L Thio; Xiaojiang Gao; James J Goedert; David Vlahov; Kenrad E Nelson; Margaret W Hilgartner; Stephen J O'Brien; Peter Karacki; Jacquie Astemborski; Mary Carrington; David L Thomas
HLA-Cw*04 and hepatitis C virus persistence.
Journal of virology 2002;76(10):4792-7.
2002: carlos driscoll; Marilyn Menotti-Raymond; George Nelson; David Goldstein; Stephen J O'Brien
Genomic microsatellites as evolutionary chronometers: a test in wild cats.
Genome research 2002;12(3):414-23.
2002: Stephen J O'Brien; Marilyn Menotti-Raymond; William J Murphy; Naoya Yuhki
The Feline Genome Project.
Annual review of genetics 2002;36():657-86.
2002: Michael Dean; Mary Carrington; Stephen J O'Brien
Balanced polymorphism selected by genetic versus infectious human disease.
Annual review of genomics and human genetics 2002;3():263-92.
2001: William J Murphy; Eduardo Eizirik; Stephen J O'Brien; Ole Madsen; Mark Scally; Christophe J Douady; Emma C Teeling; O A Ryder; Michael J Stanhope; Wilfried W de Jong; Mark S Springer
Resolution of the early placental mammal radiation using Bayesian phylogenetics.
Science (New York, N.Y.) 2001;294(5550):2348-51.
2001: William J Murphy; John E Page; C Smith; R C Desrosiers; Stephen J O'Brien
A radiation hybrid mapping panel for the rhesus macaque.
The Journal of heredity 2001;92(6):516-9.
2001: Olga Uphyrkina; Warren E Johnson; Howard B Quigley; Dale G Miquelle; L Marker; R BUSH; Stephen J O'Brien
Phylogenetics, genome diversity and origin of modern leopard, Panthera pardus.
Molecular ecology 2001;10(11):2617-33.
2001: Mary Carrington; G Nelson; Stephen J O'Brien
Considering genetic profiles in functional studies of immune responsiveness to HIV-1.
Immunology letters 2001;79(1-2):131-40.
2001: Michael W Smith; J A Lautenberger; H D Shin; J P Chretien; Sadeep Shrestha; D A Gilbert; Stephen J O'Brien
Markers for mapping by admixture linkage disequilibrium in African American and Hispanic populations.
American journal of human genetics 2001;69(5):1080-94.
2001: Alfred L Roca; Nicholas Georgiadis; Jill Pecon-Slattery; Stephen J O'Brien
Genetic evidence for two species of elephant in Africa.
Science (New York, N.Y.) 2001;293(5534):1473-7.
2001: Stephen J O'Brien
Cell culture forensics.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(14):7656-8.
2001: Chloe L Thio; David L Thomas; James J Goedert; David Vlahov; Kenrad E Nelson; Margaret W Hilgartner; Stephen J O'Brien; Peter Karacki; Darlene Marti; Jacquie Astemborski; Mary Carrington
Racial differences in HLA class II associations with hepatitis C virus outcomes.
The Journal of infectious diseases 2001;184(1):16-21.
2001: Stephen J O'Brien; Eduardo Eizirik; William J Murphy
Genomics. On choosing mammalian genomes for sequencing.
Science (New York, N.Y.) 2001;292(5525):2264-6.
2001: S Sun; William J Murphy; Marilyn Menotti-Raymond; Stephen J O'Brien
Integration of the feline radiation hybrid and linkage maps.
Mammalian genome : official journal of the International Mammalian Genome Society 2001;12(6):436-41.
2001: Xiaojiang Gao; George W Nelson; P Karacki; Maureen P Martin; John Phair; Richard A Kaslow; James J Goedert; Susan Buchbinder; Keith Hoots; David Vlahov; Stephen J O'Brien; Mary Carrington
Effect of a single amino acid change in MHC class I molecules on the rate of progression to AIDS.
The New England journal of medicine 2001;344(22):1668-75.
2001: Eduardo Eizirik; William J Murphy; Stephen J O'Brien
Molecular dating and biogeography of the early placental mammal radiation.
The Journal of heredity 2001;92(2):212-9.
2001: Eric S Daar; Henry S Lynn; Sharyne Donfield; Edward D Gomperts; Stephen J O'Brien; Margaret W Hilgartner; W Keith Hoots; D Chernoff; S Arkin; W Y Wong; Cheryl A Winkler
Hepatitis C virus load is associated with human immunodeficiency virus type 1 disease progression in hemophiliacs.
The Journal of infectious diseases 2001;183(4):589-95.
2001: William Murphy; Eduardo Eizirik; Warren E Johnson; Y P Zhang; O A Ryder; Stephen J O'Brien
Molecular phylogenetics and the origins of placental mammals.
Nature 2001;409(6820):614-8.
2001: T W Beck; Joan C Menninger; G Voigt; K Newmann; Y Nishigaki; William G Nash; R M Stephens; Y Wang; P J de Jong; Stephen J O'Brien; Naoya Yuhki
Comparative feline genomics: a BAC/PAC contig map of the major histocompatibility complex class II region.
Genomics 2001;71(3):282-95.
2001: William G Nash; Joan C Menninger; Johannes Wienberg; Hesed Padilla-Nash; Stephen J O'Brien
The pattern of phylogenomic evolution of the Canidae.
Cytogenetics and cell genetics 2001;95(3-4):210-24.
2001: William J Murphy; Roscoe Stanyon; Stephen J O'Brien
Evolution of mammalian genome organization inferred from comparative gene mapping.
Genome biology 2001;2(6):REVIEWS0005.
2001: Eduardo Eizirik; J H Kim; Marilyn Menotti-Raymond; PG Crawshaw; Stephen J O'Brien; Warren E Johnson
Phylogeography, population history and conservation genetics of jaguars (Panthera onca, Mammalia, Felidae).
Molecular ecology 2001;10(1):65-79.
2000: H D Shin; Cheryl A Winkler; J C Stephens; Jay H Bream; H Young; James J Goedert; Thomas R O'Brien; David Vlahov; Susan Buchbinder; Janis V Giorgi; Charles Rinaldo; Sharyne Donfield; A Willoughby; Stephen J O'Brien; Michael W Smith
Genetic restriction of HIV-1 pathogenesis to AIDS by promoter alleles of IL10.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(26):14467-72.
2000: R J Sarno; V A David; W L Franklin; Stephen J O'Brien; Warren E Johnson
Development of microsatellite markers in the guanaco, Lama guanicoe: utility for South American camelids.
Molecular ecology 2000;9(11):1922-4.
2000: Stephen J O'Brien; J P Moore
The effect of genetic variation in chemokines and their receptors on HIV transmission and progression to AIDS.
Immunological reviews 2000;177():99-111.
2000: Ping An; Maureen P Martin; George W Nelson; Mary Carrington; Michael W Smith; K Gong; David Vlahov; Stephen J O'Brien; Cheryl A Winkler
Influence of CCR5 promoter haplotypes on AIDS progression in African-Americans.
AIDS (London, England) 2000;14(14):2117-22.
2000: Jill Pecon-Slattery; L Sanner-Wachter; Stephen J O'Brien
Novel gene conversion between X-Y homologues located in the nonrecombining region of the Y chromosome in Felidae (Mammalia).
Proceedings of the National Academy of Sciences of the United States of America 2000;97(10):5307-12.
2000: M Culver; Warren E Johnson; Jill Pecon-Slattery; Stephen J O'Brien
Genomic ancestry of the American puma (Puma concolor).
The Journal of heredity 2000;91(3):186-97.
2000: William J Murphy; S Sun; Z Chen; Naoya Yuhki; D Hirschmann; Marilyn Menotti-Raymond; Stephen J O'Brien
A radiation hybrid map of the cat genome: implications for comparative mapping.
Genome research 2000;10(5):691-702.
2000: J A Lautenberger; J C Stephens; Stephen J O'Brien; Michael W Smith
Significant admixture linkage disequilibrium across 30 cM around the FY locus in African Americans.
American journal of human genetics 2000;66(3):969-78.
2000: Stephen J O'Brien; George W Nelson; C A Winkler; M W Smith
Polygenic and multifactorial disease gene association in man: Lessons from AIDS.
Annual review of genetics 2000;34():563-591.
1999: Warren E Johnson; JP Slattery; Eduardo Eizirik; J H Kim; M M Raymond; C Bonacic; R Cambre; PG Crawshaw; A Nunes; Héctor N Seuánez; Miguel A M Moreira; K L Seymour; F Simon; W Swanson; Stephen J O'Brien
Disparate phylogeographic patterns of molecular genetic variation in four closely related South American small cat species.
Molecular ecology 1999;8(12 Suppl 1):S79-94.
1999: Alexandre Caetano; Yow-Ling Shiue; Leslie A Lyons; Stephen J O'Brien; TF Laughlin; AT Bowling; JD Murray
A comparative gene map of the horse (Equus caballus).
Genome research 1999;9(12):1239-49.
1999: William J Murphy; S Sun; Z Q Chen; Jill Pecon-Slattery; Stephen J O'Brien
Extensive conservation of sex chromosome organization between cat and human revealed by parallel radiation hybrid mapping.
Genome research 1999;9(12):1223-30.
1999: Alexandre Caetano; Leslie A Lyons; TF Laughlin; Stephen J O'Brien; JD Murray; AT Bowling
Equine synteny mapping of comparative anchor tagged sequences (CATS) from human Chromosome 5.
Mammalian genome : official journal of the International Mammalian Genome Society 1999;10(11):1082-4.
1999: Stephen J O'Brien; J F Eisenberg; M Miyamoto; S B Hedges; S Kumar; D E Wilson; Marilyn Menotti-Raymond; William J Murphy; William G Nash; LA Lyons; Joan C Menninger; Roscoe Stanyon; Johannes Wienberg; N G Copeland; N A Jenkins; Joël Gellin; M Yerle; L Andersson; J Womack; TE Broad; J Postlethwait; O Serov; E Bailey; M R James; Jennifer A Marshall Graves
Genome maps 10. Comparative genomics. Mammalian radiations. Wall chart.
Science (New York, N.Y.) 1999;286(5439):463-78.
1999: Stephen J O'Brien; Marilyn Menotti-Raymond; William J Murphy; William G Nash; Johannes Wienberg; Roscoe Stanyon; N G Copeland; N A Jenkins; J E Womack; Jennifer A Marshall Graves
The promise of comparative genomics in mammals.
Science (New York, N.Y.) 1999;286(5439):458-62, 479-81.
1999: G A Huttley; M W Smith; M Carrington; Stephen J O'Brien
A scan for linkage disequilibrium across the human genome.
Genetics 1999;152(4):1711-22.
1999: Eric S Daar; Henry S Lynn; Sharyne Donfield; Edward D Gomperts; Margaret W Hilgartner; Keith Hoots; D Chernoff; Cheryl A Winkler; Stephen J O'Brien
Effects of plasma HIV RNA, CD4+ T lymphocytes, and the chemokine receptors CCR5 and CCR2b on HIV disease progression in hemophiliacs. Hemophilia Growth and Development Study.
Journal of acquired immune deficiency syndromes (1999) 1999;21(4):317-25.
1999: Z Q Chen; J A Lautenberger; L A Lyons; L McKenzie; Stephen J O'Brien
A human genome map of comparative anchor tagged sequences.
The Journal of heredity 1999;90(4):477-84.
1999: Marilyn Menotti-Raymond; Victor A David; LA Lyons; Alejandro A Schäffer; JF Tomlin; M K Hutton; Stephen J O'Brien
A genetic linkage map of microsatellites in the domestic cat (Felis catus).
Genomics 1999;57(1):9-23.
1999: William J Murphy; Marilyn Menotti-Raymond; LA Lyons; M A Thompson; Stephen J O'Brien
Development of a feline whole genome radiation hybrid panel and comparative mapping of human chromosome 12 and 22 loci.
Genomics 1999;57(1):1-8.
1999: Chloe L Thio; Mary Carrington; Darlene Marti; Stephen J O'Brien; David Vlahov; Kenrad E Nelson; Jacquie Astemborski; David L Thomas
Class II HLA alleles and hepatitis B virus persistence in African Americans.
The Journal of infectious diseases 1999;179(4):1004-6.
1999: Mary Carrington; George W Nelson; Maureen P Martin; T Kissner; David Vlahov; James J Goedert; Richard A Kaslow; Susan Buchbinder; Keith Hoots; Stephen J O'Brien
HLA and HIV-1: heterozygote advantage and B*35-Cw*04 disadvantage.
Science (New York, N.Y.) 1999;283(5408):1748-52.
1999: Stephen J O'Brien; Naoya Yuhki
Comparative genome organization of the major histocompatibility complex: lessons from the Felidae.
Immunological reviews 1999;167():133-44.
1999: M Carrington; M Dean; M P Martin; Stephen J O'Brien
Genetics of HIV-1 infection: chemokine receptor CCR5 polymorphism and its consequences.
Human molecular genetics 1999;8(10):1939-45.
1998: Maureen P Martin; Michael Dean; Michael W Smith; Cheryl A Winkler; B Gerrard; Nelson L Michael; B Lee; R W Doms; Joseph B Margolick; Susan Buchbinder; James J Goedert; Thomas R O'Brien; Margaret W Hilgartner; David Vlahov; Stephen J O'Brien; Mary Carrington
Genetic acceleration of AIDS progression by a promoter variant of CCR5.
Science (New York, N.Y.) 1998;282(5395):1907-11.
1998: Maureen P Martin; Mary Carrington; Michael Dean; Stephen J O'Brien; H W Sheppard; Scott Wegner; Nelson L Michael
CXCR4 polymorphisms and HIV-1 pathogenesis.
Journal of acquired immune deficiency syndromes and human retrovirology : official publication of the International Retrovirology Association 1998;19(4):430.
1998: Eduardo Eizirik; Sandro L Bonatto; Warren E Johnson; PG Crawshaw; J C Vié; D M Brousset; Stephen J O'Brien; Francisco M Salzano
Phylogeographic patterns and evolution of the mitochondrial DNA control region in two neotropical cats (Mammalia, felidae).
Journal of molecular evolution 1998;47(5):613-24.
1998: Stephen J O'Brien
AIDS: a role for host genes.
Hospital practice (1995) 1998;33(7):53-6, 59-60, 66-7 passim.
1998: Warren E Johnson; M Culver; J A Iriarte; Eduardo Eizirik; K L Seymour; Stephen J O'Brien
Tracking the evolution of the elusive Andean mountain cat (Oreailurus jacobita) from mitochondrial DNA.
The Journal of heredity 1998;89(3):227-32.
1998: Cheryl A Winkler; William S Modi; Michael W Smith; George W Nelson; X Wu; Mary Carrington; Michael Dean; T Honjo; K Tashiro; Yabe Daisuke; Susan Buchbinder; E Vittinghoff; James J Goedert; Thomas R O'Brien; Lisa P Jacobson; Roger Detels; Sharyne Donfield; A Willoughby; Edward D Gomperts; David Vlahov; John Phair; Stephen J O'Brien
Genetic restriction of AIDS pathogenesis by an SDF-1 chemokine gene variant. ALIVE Study, Hemophilia Growth and Development Study (HGDS), Multicenter AIDS Cohort Study (MACS), Multicenter Hemophilia Cohort Study (MHCS), San Francisco City Cohort (SFCC)
Science (New York, N.Y.) 1998;279(5349):389-93.
1998: William G Nash; Johannes Wienberg; MA Ferguson-Smith; Joan C Menninger; Stephen J O'Brien
Comparative genomics: tracking chromosome evolution in the family ursidae using reciprocal chromosome painting.
Cytogenetics and cell genetics 1998;83(3-4):182-92.
1997: Mary Carrington; T Kissner; B Gerrard; S Ivanov; Stephen J O'Brien; M Dean
Novel alleles of the chemokine-receptor gene CCR5.
American journal of human genetics 1997;61(6):1261-7.
1997: Marilyn Menotti-Raymond; Victor A David; J C Stephens; LA Lyons; Stephen J O'Brien
Genetic individualization of domestic cats using feline STR loci for forensic applications.
Journal of forensic sciences 1997;42(6):1039-51.
1997: Michael W Smith; Mary Carrington; Cheryl A Winkler; D Lomb; M Dean; G Huttley; Stephen J O'Brien
CCR2 chemokine receptor and AIDS progression.
Nature medicine 1997;3(10):1052-3.
1997: Michael W Smith; M Dean; Mary Carrington; G A Huttley; Stephen J O'Brien
CCR5-delta 32 gene deletion in HIV-1 infected patients.
Lancet 1997;350(9079):741; author reply 742.
1997: Stephen J O'Brien; S J Cevario; Janice Martenson; M A Thompson; William G Nash; E Chang; J A Graves; J A Spencer; K W Cho; H Tsujimoto; LA Lyons
Comparative gene mapping in the domestic cat (Felis catus).
The Journal of heredity 1997;88(5):408-14.
1997: Michael W Smith; Michael Dean; Mary Carrington; Cheryl A Winkler; G A Huttley; D A Lomb; James J Goedert; Thomas R O'Brien; Lisa P Jacobson; Richard A Kaslow; Susan Buchbinder; E Vittinghoff; David Vlahov; Keith Hoots; Margaret W Hilgartner; Stephen J O'Brien
Contrasting genetic influence of CCR2 and CCR5 variants on HIV-1 infection and disease progression. Hemophilia Growth and Development Study (HGDS), Multicenter AIDS Cohort Study (MACS), Multicenter Hemophilia Cohort Study (MHCS), San Francisco City Cohort (SFCC), ALIVE Study.
Science (New York, N.Y.) 1997;277(5328):959-65.
1997: A Giri; JP Slattery; W Heneine; Antoine Gessain; ED Rivadeneira; R C Desrosiers; L Rosen; R Anthony; Joko Pamungkas; Diah Iskandriati; Allen L Richards; V Herve; H McClure; Stephen J O'Brien; Genoveffa Franchini
The tax gene sequences form two divergent monophyletic lineages corresponding to types I and II of simian and human T-cell leukemia/lymphotropic viruses.
Virology 1997;231(1):96-104.
1997: Naoya Yuhki; Stephen J O'Brien
Nature and origin of polymorphism in feline MHC class II DRA and DRB genes.
Journal of immunology (Baltimore, Md. : 1950) 1997;158(6):2822-33.
1997: Jose Lopez; M Culver; J C Stephens; Warren E Johnson; Stephen J O'Brien
Rates of nuclear and cytoplasmic mitochondrial DNA sequence divergence in mammals.
Molecular biology and evolution 1997;14(3):277-86.
1997: Johannes Wienberg; Roscoe Stanyon; William G Nash; P C O'Brien; F Yang; Stephen J O'Brien; MA Ferguson-Smith
Conservation of human vs. feline genome organization revealed by reciprocal chromosome painting.
Cytogenetics and cell genetics 1997;77(3-4):211-7.
1997: Warren E Johnson; Stephen J O'Brien
Phylogenetic reconstruction of the Felidae using 16S rRNA and NADH-5 mitochondrial genes.
Journal of molecular evolution 1997;44 Suppl 1():S98-116.
1997: L A Lyons; TF Laughlin; N G Copeland; N A Jenkins; J E Womack; Stephen J O'Brien
Comparative anchor tagged sequences (CATS) for integrative mapping of mammalian genomes.
Nature genetics 1997;15(1):47-56.
1996: R Masuda; Jose Lopez; J P Slattery; N Yuhki; Stephen J O'Brien
Molecular phylogeny of mitochondrial cytochrome b and 12S rRNA sequences in the Felidae: ocelot and domestic cat lineages.
Molecular phylogenetics and evolution 1996;6(3):351-65.
1996: L Zhi; W B Karesh; D N Janczewski; H Frazier-Taylor; D Sajuthi; F Gombek; M Andau; J S Martenson; Stephen J O'Brien
Genomic differentiation among natural populations of orang-utan (Pongo pygmaeus).
Current biology : CB 1996;6(10):1326-36.
1996: M A Carpenter; E W Brown; M Culver; Warren E Johnson; J Pecon-Slattery; D Brousset; Stephen J O'Brien
Genetic and phylogenetic divergence of feline immunodeficiency virus in the puma (Puma concolor).
Journal of virology 1996;70(10):6682-93.
1996: M Dean; Mary Carrington; Cheryl A Winkler; G A Huttley; Michael W Smith; R Allikmets; James J Goedert; S P Buchbinder; Eric Vittinghoff; Edward D Gomperts; Sharyne Donfield; David Vlahov; Richard A Kaslow; Alfred J Saah; Charles Rinaldo; R Detels; Stephen J O'Brien
Genetic restriction of HIV-1 infection and progression to AIDS by a deletion allele of the CKR5 structural gene. Hemophilia Growth and Development Study, Multicenter AIDS Cohort Study, Multicenter Hemophilia Cohort Study, San Francisco City Cohort, ALIVE Study.
Science (New York, N.Y.) 1996;273(5283):1856-62.
1996: C House; K A Alexander; P W Kat; Stephen J O'Brien; J Mangiafico
Serum antibody to Rift Valley fever virus in African carnivores.
Annals of the New York Academy of Sciences 1996;791():345-9.
1996: Jose Lopez; S Cevario; Stephen J O'Brien
Complete nucleotide sequences of the domestic cat (Felis catus) mitochondrial genome and a transposed mtDNA tandem repeat (Numt) in the nuclear genome.
Genomics 1996;33(2):229-46.
1995: K A Alexander; P W Kat; J House; C House; Stephen J O'Brien; M K Laurenson; J W McNutt; Bennie I Osburn
African horse sickness and African carnivores.
Veterinary microbiology 1995;47(1-2):133-40.
1995: J P Slattery; Stephen J O'Brien
Molecular phylogeny of the red panda (Ailurus fulgens).
The Journal of heredity 1995;86(6):413-22.
1995: M Menotti-Raymond; Stephen J O'Brien
Hypervariable genomic variation to reconstruct the natural history of populations: lessons from the big cats.
Electrophoresis 1995;16(9):1771-4.
1995: M A Menotti-Raymond; Stephen J O'Brien
Evolutionary conservation of ten microsatellite loci in four species of Felidae.
The Journal of heredity 1995;86(4):319-22.
1995: D N Janczewski; W S Modi; J C Stephens; Stephen J O'Brien
Molecular evolution of mitochondrial 12S RNA and cytochrome b sequences in the pantherine lineage of Felidae.
Molecular biology and evolution 1995;12(4):690-707.
1994: K A Alexander; N James MacLachlan; P W Kat; C House; Stephen J O'Brien; N W Lerche; M Sawyer; L G Frank; Kay E Holekamp; Laura Smale
Evidence of natural bluetongue virus infection among African carnivores.
The American journal of tropical medicine and hygiene 1994;51(5):568-76.
1994: J C Stephens; D Briscoe; Stephen J O'Brien
Mapping by admixture linkage disequilibrium in human populations: limits and guidelines.
American journal of human genetics 1994;55(4):809-24.
1994: E W Brown; N Yuhki; Craig Packer; Stephen J O'Brien
A lion lentivirus related to feline immunodeficiency virus: epidemiologic and phylogenetic aspects.
Journal of virology 1994;68(9):5953-68.
1994: J P Slattery; Warren E Johnson; David Goldman; Stephen J O'Brien
Phylogenetic reconstruction of South American felids defined by protein electrophoresis.
Journal of molecular evolution 1994;39(3):296-305.
1994: A R Hoelzel; Jose Lopez; Gabriel A Dover; Stephen J O'Brien
Rapid evolution of a heteroplasmic repetitive sequence in the mitochondrial DNA control region of carnivores.
Journal of molecular evolution 1994;39(2):191-9.
1994: Jose Lopez; N Yuhki; R Masuda; W Modi; Stephen J O'Brien
Numt, a recent transfer and tandem amplification of mitochondrial DNA to the nuclear genome of the domestic cat.
Journal of molecular evolution 1994;39(2):174-90.
1994: N Yuhki; Stephen J O'Brien
Exchanges of short polymorphic DNA segments predating speciation in feline major histocompatibility complex class I genes.
Journal of molecular evolution 1994;39(1):22-33.
1994: Stephen J O'Brien
A role for molecular genetics in biological conservation.
Proceedings of the National Academy of Sciences of the United States of America 1994;91(13):5748-55.
1994: Damjan Glavac; Metka Ravnik-Glavac; Stephen J O'Brien; M Dean
Polymorphisms in the 3' untranslated region of the I kappa B/MAD-3 (NFKBI) gene located on chromosome 14.
Human genetics 1994;93(6):694-6.
1994: Stephen J O'Brien; W Pan; Z Lu
Pandas, people and policy.
Nature 1994;369(6477):179-80.
1994: D Briscoe; J C Stephens; Stephen J O'Brien
Linkage disequilibrium in admixed populations: applications in gene mapping.
The Journal of heredity 1994;85(1):59-63.
1994: Stephen J O'Brien
Genetic and phylogenetic analyses of endangered species.
Annual review of genetics 1994;28():467-89.
1993: A R Hoelzel; J Halley; Stephen J O'Brien; C Campagna; T Arnbom; B Le Boeuf; K Ralls; Gabriel A Dover
Elephant seal genetic variation and the use of simulation models to investigate historical population bottlenecks.
The Journal of heredity 1993;84(6):443-9.
1993: Hajime Tsujimoto; R Fulton; Kazuo Nishigaki; Yoshitsugu Matsumoto; A Hasegawa; A Tsujimoto; S Cevario; Stephen J O'Brien; Anne Terry; David E Onions
A common proviral integration region, fit-1, in T-cell tumors induced by myc-containing feline leukemia viruses.
Virology 1993;196(2):845-8.
1993: Masaru Okuda; A Umeda; Yoshitsugu Matsumoto; Yasuyuki Momoi; Toshihiro Watari; Ryo Goitsuka; Stephen J O'Brien; Hajime Tsujimoto; A Hasegawa
Molecular cloning and chromosomal mapping of feline p53 tumor suppressor gene.
The Journal of veterinary medical science / the Japanese Society of Veterinary Science 1993;55(5):801-5.
1993: C Scott Baker; D A Gilbert; M T Weinrich; R Lambertsen; J Calambokidis; B McArdle; G K Chambers; Stephen J O'Brien
Population characteristics of DNA fingerprints in humpback whales (Megaptera novaeangliae).
The Journal of heredity 1993;84(4):281-90.
1993: M Menotti-Raymond; Stephen J O'Brien
Dating the genetic bottleneck of the African cheetah.
Proceedings of the National Academy of Sciences of the United States of America 1993;90(8):3172-6.
1993: Stephen J O'Brien; J E Womack; L A Lyons; K J Moore; N A Jenkins; N G Copeland
Anchored reference loci for comparative genome mapping in mammals.
Nature genetics 1993;3(2):103-12.
1993: J L Brown; R BUSH; Craig Packer; A E Pusey; S L Monfort; Stephen J O'Brien; D L Janssen; David E Wildt
Hormonal characteristics of free-ranging female lions (Panthera leo) of the Serengeti Plains and Ngorongoro Crater.
Journal of reproduction and fertility 1993;97(1):107-14.
1992: D N Janczewski; N Yuhki; D A Gilbert; G T Jefferson; Stephen J O'Brien
Molecular phylogenetic inference from saber-toothed cat fossils of Rancho La Brea.
Proceedings of the National Academy of Sciences of the United States of America 1992;89(20):9769-73.
1992: M J Kelley; M Pech; H N Seuanez; Jeffrey S Rubin; Stephen J O'Brien; Stuart A Aaronson
Emergence of the keratinocyte growth factor multigene family during the great ape radiation.
Proceedings of the National Academy of Sciences of the United States of America 1992;89(19):9287-91.
1992: J C Stephens; D A Gilbert; N Yuhki; Stephen J O'Brien
Estimation of heterozygosity for single-probe multilocus DNA fingerprints.
Molecular biology and evolution 1992;9(4):729-43.
1992: Stephen J O'Brien; Dean L Mann
Adaptive chaos and AIDS.
Current biology : CB 1992;2(4):203-5.
1991: R Masuda; N Yuhki; Stephen J O'Brien
Molecular cloning, chromosomal assignment, and nucleotide sequence of the feline homeobox HOX3A.
Genomics 1991;11(4):1007-13.
1991: D A Gilbert; Craig Packer; A E Pusey; J C Stephens; Stephen J O'Brien
Analytical DNA fingerprinting in lions: parentage, genetic diversity, and kinship.
The Journal of heredity 1991;82(5):378-86.
1991: M Dean; S Lucas-Derse; A Bolos; Stephen J O'Brien; E F Kirkness; Claire M Fraser-Liggett; David Goldman
Genetic mapping of the beta 1 GABA receptor gene to human chromosome 4, using a tetranucleotide repeat polymorphism.
American journal of human genetics 1991;49(3):621-6.
1991: Stephen J O'Brien
Ghetto legacy.
Current biology : CB 1991;1(4):209-11.
1991: Robert K Wayne; B Van Valkenburgh; Stephen J O'Brien
Molecular distance and divergence time in carnivores and primates.
Molecular biology and evolution 1991;8(3):297-319.
1991: J L Brown; R BUSH; Craig Packer; A E Pusey; S L Monfort; Stephen J O'Brien; D L Janssen; David E Wildt
Developmental changes in pituitary-gonadal function in free-ranging lions (Panthera leo leo) of the Serengeti Plains and Ngorongoro Crater.
Journal of reproduction and fertility 1991;91(1):29-40.
1991: Murray B Gardner; C A Kozak; Stephen J O'Brien
The Lake Casitas wild mouse: evolving genetic resistance to retroviral disease.
Trends in genetics : TIG 1991;7(1):22-7.
1990: D A Gilbert; Y A Reid; M H Gail; D Pee; C White; R J Hay; Stephen J O'Brien
Application of DNA fingerprints for cell-line individualization.
American journal of human genetics 1990;47(3):499-514.
1990: N Yuhki; Stephen J O'Brien
DNA recombination and natural selection pressure sustain genetic sequence diversity of the feline MHC class I genes.
The Journal of experimental medicine 1990;172(2):621-30.
1990: D A Gilbert; N Lehman; Stephen J O'Brien; Robert K Wayne
Genetic fingerprinting reflects population differentiation in the California Channel Island fox.
Nature 1990;344(6268):764-7.
1990: C Scott Baker; S R Palumbi; R H Lambertsen; M T Weinrich; J Calambokidis; Stephen J O'Brien
Influence of seasonal migration on geographic distribution of mitochondrial DNA haplotypes in humpback whales.
Nature 1990;344(6263):238-40.
1990: Robert K Wayne; A Meyer; N Lehman; B Van Valkenburgh; P W Kat; T K Fuller; D Girman; Stephen J O'Brien
Large sequence divergence among mitochondrial DNA genotypes within populations of eastern African black-backed jackals.
Proceedings of the National Academy of Sciences of the United States of America 1990;87(5):1772-6.
1990: N Yuhki; Stephen J O'Brien
DNA variation of the mammalian major histocompatibility complex reflects genomic diversity and population history.
Proceedings of the National Academy of Sciences of the United States of America 1990;87(2):836-40.
1990: W S Modi; M Dean; H N Seuanez; N Mukaida; K Matsushima; Stephen J O'Brien
Monocyte-derived neutrophil chemotactic factor (MDNCF/IL-8) resides in a gene cluster along with several other members of the platelet factor 4 gene superfamily.
Human genetics 1990;84(2):185-7.
1989: W S Modi; M A Levine; H N Seuanez; M Dean; Stephen J O'Brien
The human chromogranin A gene: chromosome assignment and RFLP analysis.
American journal of human genetics 1989;45(5):814-8.
1989: Robert K Wayne; B Van Valkenburgh; P W Kat; T K Fuller; W E Johnson; Stephen J O'Brien
Genetic and morphological divergence among sympatric canids.
The Journal of heredity 1989;80(6):447-54.
1989: Matthias W Hentze; H N Seuanez; Stephen J O'Brien; J B Harford; Richard D Klausner
Chromosomal localization of nucleic acid-binding proteins by affinity mapping: assignment of the IRE-binding protein gene to human chromosome 9.
Nucleic acids research 1989;17(15):6103-8.
1989: Stephen J O'Brien
Reply from s.I. O'Brien.
Trends in ecology & evolution 1989;4(6):178.
1989: N Yuhki; Gisela Heidecker; Stephen J O'Brien
Characterization of MHC cDNA clones in the domestic cat. Diversity and evolution of class I genes.
Journal of immunology (Baltimore, Md. : 1950) 1989;142(10):3676-82.
1989: W S Modi; H N Seuànez; M Jaye; H J Haigler; R Kaplan; Stephen J O'Brien
The human endonexin II (ENX2) gene is located at 4q28----q32.
Cytogenetics and cell genetics 1989;52(3-4):167-9.
1988: Allan M Weissman; D Hou; D G Orloff; W S Modi; H Seuanez; Stephen J O'Brien; Richard D Klausner
Molecular cloning and chromosomal localization of the human T-cell receptor zeta chain: distinction from the molecular CD3 complex.
Proceedings of the National Academy of Sciences of the United States of America 1988;85(24):9709-13.
1988: Stephen J O'Brien; J F Evermann
Interactive influence of infectious disease and genetic diversity in natural populations.
Trends in ecology & evolution 1988;3(10):254-9.
1988: W S Modi; A Masuda; M Yamada; J J Oppenheim; K Matsushima; Stephen J O'Brien
Chromosomal localization of the human interleukin 1 alpha (IL-1 alpha) gene.
Genomics 1988;2(4):310-4.
1988: D A Gilbert; J S O'Brien; Stephen J O'Brien
Chromosomal mapping of lysosomal enzyme structural genes in the domestic cat.
Genomics 1988;2(4):329-36.
1988: Thomas G Fanning; W S Modi; R K Wayne; Stephen J O'Brien
Evolution of heterochromatin-associated satellite DNA loci in felids and canids (Carnivora).
Cytogenetics and cell genetics 1988;48(4):214-9.
1988: W S Modi; Thomas G Fanning; R K Wayne; Stephen J O'Brien
Chromosomal localization of satellite DNA sequences among 22 species of felids and canids (Carnivora).
Cytogenetics and cell genetics 1988;48(4):208-13.
1988: Stephen J O'Brien; Héctor N Seuánez; J E Womack
Mammalian genome organization: an evolutionary view.
Annual review of genetics 1988;22():323-51.
1988: N Yuhki; Stephen J O'Brien
Molecular characterization and genetic mapping of class I and class II MHC genes of the domestic cat.
Immunogenetics 1988;27(6):414-25.
1987: W S Modi; W G Nash; A C Ferrari; Stephen J O'Brien
Cytogenetic methodologies for gene mapping and comparative analyses in mammalian cell culture systems.
Gene analysis techniques 1987;4(4):75-85.