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Duncan Odom

Research Profile

Chemicals & Drugs

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Oligonucleotide Array Sequence Analysis

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Publications

TOP 3
Alister P W Funnell; Frederic P Lemaigre; Natisha Magan; Ka Sin Mak; Duncan T Odom; Richard C M Pearson; Kathryn M Stowell; Michael D Wilson; Benoit Ballester; Jon Burdach; Paul Flicek; Merlin Crossley
A CpG mutational hotspot in a ONECUT binding site accounts for the prevalent variant of hemophilia B Leyden.
Michelle C Ward; Stephen Watt; Michael D Wilson; Qun Pan; Dominic Schmidt; Petra C Schwalie; Rory Stark; David Thybert; Nuno L Barbosa-Morais; Benjamin J Blencowe; Paul Flicek; Kristina Kirschner; Claudia Kutter; Margus Lukk; Suraj Menon; Duncan T Odom
Latent regulatory potential of human-specific repetitive elements.
Aileen Marshall; Graeme Alexander; Susan Davies; Claudia Kutter; Margus Lukk; Duncan T Odom
Global gene expression profiling reveals SPINK1 as a potential hepatocellular carcinoma marker.

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All Publications

2013: Alister P W Funnell; Frederic P Lemaigre; Natisha Magan; Ka Sin Mak; Duncan T Odom; Richard C M Pearson; Kathryn M Stowell; Michael D Wilson; Benoit Ballester; Jon Burdach; Paul Flicek; Merlin Crossley
A CpG mutational hotspot in a ONECUT binding site accounts for the prevalent variant of hemophilia B Leyden.
American journal of human genetics 2013;92(3):460-7.
2013: Michelle C Ward; Stephen Watt; Michael D Wilson; Qun Pan; Dominic Schmidt; Petra C Schwalie; Rory Stark; David Thybert; Nuno L Barbosa-Morais; Benjamin J Blencowe; Paul Flicek; Kristina Kirschner; Claudia Kutter; Margus Lukk; Suraj Menon; Duncan T Odom
Latent regulatory potential of human-specific repetitive elements.
Molecular cell 2013;49(2):262-72.
2013: Aileen Marshall; Graeme Alexander; Susan Davies; Claudia Kutter; Margus Lukk; Duncan T Odom
Global gene expression profiling reveals SPINK1 as a potential hepatocellular carcinoma marker.
PloS one 2013;8(3):e59459.
2013: Hannah K Long; Duncan T Odom; Roger Patient; Chris P Ponting; David Sims; Megan L Wright; Neil P Blackledge; Frank Grützner; Andreas Heger; Claudia Kutter; Robert J Klose
Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates.
eLife 2013;2():e00348.
2012: Nuno Barbosa-Morais; Recep Colak; Brendan J Frey; Serge Gueroussov; Manuel Irimia; Philip M Kim; TaeHyung Kim; Claudia Kutter; Leo J Lee; Christine M Misquitta-Ali; Duncan T Odom; Qun Pan; Valentina Slobodeniuc; Stephen Watt; Michael D Wilson; Hui Y Xiong; Benjamin J Blencowe
The evolutionary landscape of alternative splicing in vertebrate species.
Science (New York, N.Y.) 2012;338(6114):1587-93.
2012: Angela Goncalves; Sarah Leigh-Brown; Alvis Brazma; Paul Flicek; Duncan T Odom; Klara Stefflova; David Thybert; Ernest Turro; John C Marioni
Extensive compensatory cis-trans regulation in the evolution of mouse gene expression.
Genome research 2012;22(12):2376-84.
2012: Andre J Faure; Duncan T Odom; Robert G Ramsay; Dominic Schmidt; Petra C Schwalie; Stephen Watt; Michael D Wilson; Huiling Xu; Paul Flicek
Cohesin regulates tissue-specific expression by stabilizing highly occupied cis-regulatory modules.
Genome research 2012;22(11):2163-75.
2012: Kelly A Holmes; Antoni Hurtado; Rosalind Launchbury; Duncan T Odom; Caryn S Ross-Innes; Gordon D Brown; james hadfield; Jason S Carroll
Transducin-like enhancer protein 1 mediates estrogen receptor binding and transcriptional activity in breast cancer cells.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(8):2748-53.
2012: Dominic Schmidt; Petra C Schwalie; Michael D Wilson; Benoit Ballester; Gordon D Brown; Paul Flicek; Angela Gonçalves; Claudia Kutter; Aileen Marshall; Duncan T Odom
Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineages.
Cell 2012;148(1-2):335-48.
2012: Claudia Kutter; Angela Goncalves; Duncan T Odom; Chris P Ponting; Klara Stefflova; Stephen Watt; Michael D Wilson; Ana C Marques
Rapid turnover of long noncoding RNAs and the evolution of gene expression.
PLoS genetics 2012;8(7):e1002841.
2012: Diego Villar; Duncan T Odom
Generalizing complexity: a fruitful partnership of functional genomics and systems biology.
Genome medicine 2012;4(2):11.
2011: Elisabete M Nascimento; Jennifer Nichols; Duncan T Odom; Menon Suraj; Matthew Trotter; Salvador Aznar Benitah; Sandra Blanco; Claire L Cox; Brian Hendrich; Shobbir Hussain; Bernd Kübler; Stewart MacArthur; Michaela Frye
The opposing transcriptional functions of Sin3a and c-Myc are required to maintain tissue homeostasis.
Nature cell biology 2011;13(12):1395-405.
2011: Claudia Kutter; Alvis Brazma; Gordon D Brown; Angela Gonçalves; Stephen Watt; Robert J White; Michael D Wilson; Duncan T Odom
Pol III binding in six mammals shows conservation among amino acid isotypes despite divergence among tRNA genes.
Nature genetics 2011;43(10):948-55.
2010: Dominic Schmidt; Michael D Wilson; Benoit Ballester; Petra C Schwalie; Gordon D Brown; Aileen Marshall; Claudia Kutter; Stephen Watt; Celia P Martinez-Jimenez; Sarah Mackay; Iannis Talianidis; Paul Flicek; Duncan T Odom
Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding.
Science (New York, N.Y.) 2010;328(5981):1036-40.
2010: Dominic Schmidt; Petra C Schwalie; Caryn S Ross-Innes; Antoni Hurtado; Gordon D Brown; Jason S Carroll; Paul Flicek; Duncan T Odom
A CTCF-independent role for cohesin in tissue-specific transcription.
Genome research 2010;20(5):578-88.
2010: Sarah Leigh-Brown; José Antonio Enriquez; Duncan T Odom
Nuclear transcription factors in mammalian mitochondria.
Genome biology 2010;11(7):215.
2009: Michael D Wilson; Duncan T Odom
Evolution of transcriptional control in mammals.
Current opinion in genetics & development 2009;19(6):579-85.
2007: Duncan T Odom; Robin D Dowell; Elizabeth S Jacobsen; William Gordon; Timothy Danford; Kenzie D Macisaac; P Alexander Rolfe; Caitlin M Conboy; David K Gifford; Ernest Fraenkel
Tissue-specific transcriptional regulation has diverged significantly between human and mouse.
Nature genetics 2007;39(6):730-2.
2007: Caitlin M Conboy; Christiana Spyrou; Natalie P Thorne; Elizabeth J Wade; Nuno Barbosa-Morais; Michael D Wilson; Arindam Bhattacharjee; Richard A Young; Simon Tavaré; Jacqueline A Lees; Duncan T Odom
Cell cycle genes are the evolutionarily conserved targets of the E2F4 transcription factor.
PloS one 2007;2(10):e1061.
2006: Tong Ihn Lee; Richard G Jenner; Laurie A Boyer; Matthew G Guenther; Stuart S Levine; Roshan M. Kumar; Brett Chevalier; Sarah E Johnstone; Megan F Cole; Kyo-ichi Isono; Haruhiko Koseki; Takuya Fuchikami; Kuniya Abe; Heather L Murray; Jacob P Zucker; Bingbing Yuan; George W Bell; Elizabeth Herbolsheimer; Nancy M Hannett; Kaiming Sun; Duncan T Odom; Arie P Otte; Thomas L Volkert; David P Bartel; Douglas A Melton; David K Gifford; Rudolf Jaenisch; Richard A Young
Control of developmental regulators by Polycomb in human embryonic stem cells.
Cell 2006;125(2):301-13.
2006: Kenzie D Macisaac; D Benjamin Gordon; Lena Nekludova; Duncan T Odom; Joerg Schreiber; David K Gifford; Richard A Young; Ernest Fraenkel
A hypothesis-based approach for identifying the binding specificity of regulatory proteins from chromatin immunoprecipitation data.
Bioinformatics (Oxford, England) 2006;22(4):423-9.
2006: Fiona Wardle; Duncan T Odom; George W Bell; Bingbing Yuan; Timothy Danford; Elizabeth L Wiellette; Elizabeth Herbolsheimer; Hazel Sive; Richard A Young; Jim Smith
Zebrafish promoter microarrays identify actively transcribed embryonic genes.
Genome biology 2006;7(8):R71.
2006: Duncan T Odom; Robin D Dowell; Elizabeth S Jacobsen; Lena Nekludova; P Alexander Rolfe; Timothy Danford; David K Gifford; Ernest Fraenkel; Graeme I Bell; Richard A Young
Core transcriptional regulatory circuitry in human hepatocytes.
Molecular systems biology 2006;2():2006.0017.
2005: Xinmin Zhang; Duncan T Odom; Seung-Hoi Koo; Michael D Conkright; Gianluca Canettieri; Jennifer Best; Huaming Chen; Richard G Jenner; Elizabeth Herbolsheimer; Elizabeth Jacobsen; Shilpa Kadam; SD MA; Beverly M Emerson; John B Hogenesch; Terry G Unterman; Richard A Young; Marc Montminy
Genome-wide analysis of cAMP-response element binding protein occupancy, phosphorylation, and target gene activation in human tissues.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(12):4459-64.
2004: Duncan T Odom; Nora Zizlsperger; D Benjamin Gordon; George W Bell; Nicola J Rinaldi; Heather L Murray; Thomas L Volkert; Joerg Schreiber; P Alexander Rolfe; David K Gifford; Ernest Fraenkel; Graeme I Bell; Richard A Young
Control of pancreas and liver gene expression by HNF transcription factors.
Science (New York, N.Y.) 2004;303(5662):1378-81.
2002: Tong Ihn Lee; Nicola J Rinaldi; François Robert; Duncan T Odom; Ziv Bar-Joseph; Georg Gerber; Nancy M Hannett; Christopher T Harbison; Craig M Thompson; Itamar Simon; Julia Zeitlinger; Ezra Jennings; Heather L Murray; D Benjamin Gordon; Bing Ren; John J Wyrick; Jean-Bosco Tagne; Thomas L Volkert; Ernest Fraenkel; David K Gifford; Richard A Young
Transcriptional regulatory networks in Saccharomyces cerevisiae.
Science (New York, N.Y.) 2002;298(5594):799-804.