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Eiichi Ohtsubo

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Co-Publications
Name
24
Ohtsubo, Hisako
11
Sekine, Yasuhiko
10
Tsuchimoto, Suguru
8
Noma, Kenichi
8
Han, Chang-Gyun
4
Cheng, Chaoyang
4
Hayashi, Tetsuya
4
Kumekawa, N
4
Shiga, Yasuyuki
3
Xu, Jian-Hong
3
Sasakawa, Chihiro
3
Ohta, Shinya
2
Nakayama, Keisuke
2
Ohnishi, Makoto
2
Shinagawa, Hideo

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Publications

TOP 3
Tsuchimoto Suguru; Hirao Yoshitoshi; Ohtsubo Eiichi; Ohtsubo Hisako
New SINE families from rice, OsSN, with poly(A) at the 3' ends.
Xu Jian-Hong; Cheng Chaoyang; Tsuchimoto Suguru; Ohtsubo Hisako; Ohtsubo Eiichi
Phylogenetic analysis of Oryza rufipogon strains and their relations to Oryza sativa strains by insertion polymorphism of rice SINEs.
Xu Jian-Hong; Osawa Isaku; Tsuchimoto Suguru; Ohtsubo Eiichi; Ohtsubo Hisako
Two new SINE elements, p-SINE2 and p-SINE3, from rice.

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All Publications

2008: Tsuchimoto Suguru; Hirao Yoshitoshi; Ohtsubo Eiichi; Ohtsubo Hisako
New SINE families from rice, OsSN, with poly(A) at the 3' ends.
Genes & genetic systems 2008;83(3):227-36.
2007: Xu Jian-Hong; Cheng Chaoyang; Tsuchimoto Suguru; Ohtsubo Hisako; Ohtsubo Eiichi
Phylogenetic analysis of Oryza rufipogon strains and their relations to Oryza sativa strains by insertion polymorphism of rice SINEs.
Genes & genetic systems 2007;82(3):217-29.
2005: Xu Jian-Hong; Osawa Isaku; Tsuchimoto Suguru; Ohtsubo Eiichi; Ohtsubo Hisako
Two new SINE elements, p-SINE2 and p-SINE3, from rice.
Genes & genetic systems 2005;80(3):161-71.
2005: Xu Jian-Hong; Kurata Nori; Akimoto Masahiro; Ohtsubo Hisako; Ohtsubo Eiichi
Identification and characterization of Australian wild rice strains of Oryza meridionalis and Oryza rufipogon by SINE insertion polymorphism.
Genes & genetic systems 2005;80(2):129-34.
2004: Ohta Shinya; Yoshimura Etsuro; Ohtsubo Eiichi
Involvement of two domains with helix-turn-helix and zinc finger motifs in the binding of IS1 transposase to terminal inverted repeats.
Molecular microbiology 2004;53(1):193-202.
2004: Ohtsubo Eiichi; Minematsu Hiroshi; Tsuchida Ken; Ohtsubo Hisako; Sekine Yasuhiko
Intermediate molecules generated by transposase in the pathways of transposition of bacterial insertion element IS3.
Advances in biophysics 2004;38():125-39.
2003: Mayama Tomoko; Ohtsubo Eiichi; Tsuchimoto Suguru
Isolation and expression analysis of petunia CURLY LEAF-like genes.
Plant & cell physiology 2003;44(8):811-9.
2003: Choi Sunju; Ohta Shinya; Ohtsubo Eiichi
A novel IS element, IS621, of the IS110/IS492 family transposes to a specific site in repetitive extragenic palindromic sequences in Escherichia coli.
Journal of bacteriology 2003;185(16):4891-900.
2003: Kato Naoki; Yamazoe Kikuo; Han Chang-Gyun; Ohtsubo Eiichi
New insertion sequence elements in the upstream region of cfiA in imipenem-resistant Bacteroides fragilis strains.
Antimicrobial agents and chemotherapy 2003;47(3):979-85.
2003: Cheng Chaoyang; Motohashi Reiko; Tsuchimoto Suguru; Fukuta Yoshimichi; Ohtsubo Hisako; Ohtsubo Eiichi
Polyphyletic origin of cultivated rice: based on the interspersion pattern of SINEs.
Molecular biology and evolution 2003;20(1):67-75.
2002: Ohta Yoshizu; Noma Kenichi; Tsuchimoto Suguru; Ohtsubo Eiichi; Ohtsubo Hisako
Expression of Arabidopsis LINEs from two promoters.
The Plant journal : for cell and molecular biology 2002;32(5):809-18.
2002: Ohta Shinya; Tsuchida Ken; Choi Sunju; Sekine Yasuhiko; Shiga Yasuyuki; Ohtsubo Eiichi
Presence of a characteristic D-D-E motif in IS1 transposase.
Journal of bacteriology 2002;184(22):6146-54.
2002: Cheng Chaoyang; Tsuchimoto Suguru; Ohtsubo Hisako; Ohtsubo Eiichi
Evolutionary relationships among rice species with AA genome based on SINE insertion analysis.
Genes & genetic systems 2002;77(5):323-34.
2002: Urasaki Akihiro; Sekine Yasuhiko; Ohtsubo Eiichi
Transposition of cyanobacterium insertion element ISY100 in Escherichia coli.
Journal of bacteriology 2002;184(18):5104-12.
2002: Murata Takahiro; Ohnishi Makoto; Ara Takeshi; Kaneko Jun; Han Chang-Gyun; Li Yong Fang; Takashima Kayoko; Nojima Hideaki; Nakayama Keisuke; Kaji Akira; Kamio Yoshiyuki; Miki Takeyoshi; Mori Hirotada; Ohtsubo Eiichi; Terawaki Yoshiro; Hayashi Tetsuya
Complete nucleotide sequence of plasmid Rts1: implications for evolution of large plasmid genomes.
Journal of bacteriology 2002;184(12):3194-202.
2001: Noma K; Ohtsubo H; Ohtsubo E
A new class of LINEs (ATLN-L) from Arabidopsis thaliana with extraordinary structural features.
DNA research : an international journal for rapid publication of reports on genes and genomes 2001;8(6):291-9.
2001: Takami H; Han C G; Takaki Y; Ohtsubo E
Identification and distribution of new insertion sequences in the genome of alkaliphilic Bacillus halodurans C-125.
Journal of bacteriology 2001;183(14):4345-56.
2001: Han C G; Shiga Y; Tobe T; Sasakawa C; Ohtsubo E
Structural and functional characterization of IS679 and IS66-family elements.
Journal of bacteriology 2001;183(14):4296-304.
2001: Myouga F; Tsuchimoto S; Noma K; Ohtsubo H; Ohtsubo E
Identification and structural analysis of SINE elements in the Arabidopsis thaliana genome.
Genes & genetic systems 2001;76(3):169-79.
2001: Kumekawa N; Ohmido N; Fukui K; Ohtsubo E; Ohtsubo H
A new gypsy-type retrotransposon, RIRE7: preferential insertion into the tandem repeat sequence TrsD in pericentromeric heterochromatin regions of rice chromosomes.
Molecular genetics and genomics : MGG 2001;265(3):480-8.
2001: Shiga Y; Sekine Y; Kano Y; Ohtsubo E
Involvement of H-NS in transpositional recombination mediated by IS1.
Journal of bacteriology 2001;183(8):2476-84.
2001: Hayashi T; Makino K; Ohnishi M; Kurokawa K; Ishii K; Yokoyama K; Han C G; Ohtsubo E; Nakayama K; Murata T; Tanaka M; Tobe T; Iida T; Takami H; Honda T; Sasakawa C; Ogasawara N; Yasunaga T; Kuhara S; Shiba T; Hattori M; Shinagawa H
Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12.
DNA research : an international journal for rapid publication of reports on genes and genomes 2001;8(1):11-22.
2000: Cheng C; Tsuchimoto S; Ohtsubo H; Ohtsubo E
Tnr8, a foldback transposable element from rice.
Genes & genetic systems 2000;75(6):327-33.
2000: Noma K; Ohtsubo H; Ohtsubo E
ATLN elements, LINEs from Arabidopsis thaliana: identification and characterization.
DNA research : an international journal for rapid publication of reports on genes and genomes 2000;7(5):291-303.
2000: Han C G; Frank M J; Ohtsubo H; Ohtsubo E
New transposable elements identified as insertions in rice transposon Tnr1.
Genes & genetic systems 2000;75(2):69-77.
2000: Noma K; Ohtsubo E
Tnat1 and Tnat2 from Arabidopsis thaliana: novel transposable elements with tandem repeat sequences.
DNA research : an international journal for rapid publication of reports on genes and genomes 2000;7(1):1-7.
2000: Tsuchimoto S; Mayama T; van der Krol A; Ohtsubo E
The whorl-specific action of a petunia class B floral homeotic gene.
Genes to cells : devoted to molecular & cellular mechanisms 2000;5(2):89-99.
1999: Kumekawa N; Ohtsubo E; Ohtsubo H
Identification and phylogenetic analysis of gypsy-type retrotransposons in the plant kingdom.
Genes & genetic systems 1999;74(6):299-307.
1999: Sekine Y; Aihara K; Ohtsubo E
Linearization and transposition of circular molecules of insertion sequence IS3.
Journal of molecular biology 1999;294(1):21-34.
1999: Shiga Y; Sekine Y; Ohtsubo E
Transposition of IS1 circles.
Genes to cells : devoted to molecular & cellular mechanisms 1999;4(10):551-61.
1999: Tobe T; Hayashi T; Han C G; Schoolnik G K; Ohtsubo E; Sasakawa C
Complete DNA sequence and structural analysis of the enteropathogenic Escherichia coli adherence factor plasmid.
Infection and immunity 1999;67(10):5455-62.
1999: Ohtsubo H; Kumekawa N; Ohtsubo E
RIRE2, a novel gypsy-type retrotransposon from rice.
Genes & genetic systems 1999;74(3):83-91.
1999: Noma K; Ohtsubo E; Ohtsubo H
Non-LTR retrotransposons (LINEs) as ubiquitous components of plant genomes.
Molecular & general genetics : MGG 1999;261(1):71-9.
1999: Kumekawa N; Ohtsubo H; Horiuchi T; Ohtsubo E
Identification and characterization of novel retrotransposons of the gypsy type in rice.
Molecular & general genetics : MGG 1999;260(6):593-602.
1998: Taki K; Abo T; Ohtsubo E
Regulatory mechanisms in expression of the traY-I operon of sex factor plasmid R100: involvement of traJ and traY gene products.
Genes to cells : devoted to molecular & cellular mechanisms 1998;3(6):331-45.
1998: Ohtsubo E; Abo T; Fukuda H
[Sexuality in bacteria]
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 1998;43(4):305-13.
1998: Makino K; Ishii K; Yasunaga T; Hattori M; Yokoyama K; Yutsudo C H; Kubota Y; Yamaichi Y; Iida T; Yamamoto K; Honda T; Han C G; Ohtsubo E; Kasamatsu M; Hayashi T; Kuhara S; Shinagawa H
Complete nucleotide sequences of 93-kb and 3.3-kb plasmids of an enterohemorrhagic Escherichia coli O157:H7 derived from Sakai outbreak.
DNA research : an international journal for rapid publication of reports on genes and genomes 1998;5(1):1-9.
1997: Fukuda H; Ohtsubo E
Roles of TraI protein with activities of cleaving and rejoining the single-stranded DNA in both initiation and termination of conjugal DNA transfer.
Genes to cells : devoted to molecular & cellular mechanisms 1997;2(12):735-51.
1997: Uozu S; Ikehashi H; Ohmido N; Ohtsubo H; Ohtsubo E; Fukui K
Repetitive sequences: cause for variation in genome size and chromosome morphology in the genus Oryza.
Plant molecular biology 1997;35(6):791-9.
1997: Sekine Y; Izumi K; Mizuno T; Ohtsubo E
Inhibition of transpositional recombination by OrfA and OrfB proteins encoded by insertion sequence IS3.
Genes to cells : devoted to molecular & cellular mechanisms 1997;2(9):547-57.
1997: Noma K; Nakajima R; Ohtsubo H; Ohtsubo E
RIRE1, a retrotransposon from wild rice Oryza australiensis.
Genes & genetic systems 1997;72(3):131-40.
1997: Sekine Y; Eisaki N; Kobayashi K; Ohtsubo E
Isolation and characterization of IS1 circles.
Gene 1997;191(2):183-90.
1996: Nakajima R; Noma K; Ohtsubo H; Ohtsubo E
Identification and characterization of two tandem repeat sequences (TrsB and TrsC) and a retrotransposon (RIRE1) as genome-general sequences in rice.
Genes & genetic systems 1996;71(6):373-82.
1996: Maekawa T; Yanagihara K; Ohtsubo E
Specific nicking at the 3' ends of the terminal inverted repeat sequences in transposon Tn3 by transposase and an E. coli protein ACP.
Genes to cells : devoted to molecular & cellular mechanisms 1996;1(11):1017-30.
1996: Maekawa T; Yanagihara K; Ohtsubo E
A cell-free system of Tn3 transposition and transposition immunity.
Genes to cells : devoted to molecular & cellular mechanisms 1996;1(11):1007-16.
1996: Motohashi R; Ohtsubo E; Ohtsubo H
Identification of Tnr3, a suppressor-mutator/enhancer-like transposable element from rice.
Molecular & general genetics : MGG 1996;250(2):148-52.
1996: Sekine Y; Eisaki N; Ohtsubo E
Identification and characterization of the linear IS3 molecules generated by staggered breaks.
The Journal of biological chemistry 1996;271(1):197-202.
1995: Fukuda H; Ohtsubo E
Large scale purification and characterization of TraI endonuclease encoded by sex factor plasmid R100.
The Journal of biological chemistry 1995;270(36):21319-25.
1995: Abo T; Ohtsubo E
Characterization of the functional sites in the oriT region involved in DNA transfer promoted by sex factor plasmid R100.
Journal of bacteriology 1995;177(15):4350-5.
1995: Sekino N; Sekine Y; Ohtsubo E
IS1-encoded proteins, InsA and the InsA-B'-InsB transframe protein (transposase): functions deduced from their DNA-binding ability.
Advances in biophysics 1995;31():209-22.
1994: Ohtsubo H; Ohtsubo E
Involvement of transposition in dispersion of tandem repeat sequences (TrsA) in rice genomes.
Molecular & general genetics : MGG 1994;245(4):449-55.
1994: Tenzen T; Matsuda Y; Ohtsubo H; Ohtsubo E
Transposition of Tnr1 in rice genomes to 5'-PuTAPy-3' sites, duplicating the TA sequence.
Molecular & general genetics : MGG 1994;245(4):441-8.
1994: Inamoto S; Fukuda H; Abo T; Ohtsubo E
Site- and strand-specific nicking at oriT of plasmid R100 in a purified system: enhancement of the nicking activity of TraI (helicase I) with TraY and IHF.
Journal of biochemistry 1994;116(4):838-44.
1994: Kamisugi Y; Nakayama S; Nakajima R; Ohtsubo H; Ohtsubo E; Fukui K
Physical mapping of the 5S ribosomal RNA genes on rice chromosome 11.
Molecular & general genetics : MGG 1994;245(2):133-8.
1994: Masuda Y; Ohtsubo E
Mapping and disruption of the chpB locus in Escherichia coli.
Journal of bacteriology 1994;176(18):5861-3.
1994: Maekawa T; Ohtsubo E
Identification of the region that determines the specificity of binding of the transposases encoded by Tn3 and gamma delta to the terminal inverted repeat sequences.
Idengaku zasshi 1994;69(3):269-85.
1994: Sekine Y; Eisaki N; Ohtsubo E
Translational control in production of transposase and in transposition of insertion sequence IS3.
Journal of molecular biology 1994;235(5):1406-20.
1993: Masuda Y; Miyakawa K; Nishimura Y; Ohtsubo E
chpA and chpB, Escherichia coli chromosomal homologs of the pem locus responsible for stable maintenance of plasmid R100.
Journal of bacteriology 1993;175(21):6850-6.
1993: Abo T; Ohtsubo E
Repression of the traM gene of plasmid R100 by its own product and integration host factor at one of the two promoters.
Journal of bacteriology 1993;175(14):4466-74.
1993: Mochizuki K; Ohtsubo H; Hirano H; Sano Y; Ohtsubo E
Classification and relationships of rice strains with AA genome by identification of transposable elements at nine loci.
Idengaku zasshi 1993;68(3):205-17.
1993: Masuda Y; Tsuchimoto S; Nishimura A; Ohtsubo E
Isolation of temperature-sensitive aminoacyl-tRNA synthetase mutants from an Escherichia coli strain harboring the pemK plasmid.
Molecular & general genetics : MGG 1993;238(1-2):169-76.
1993: Tsuchimoto S; Ohtsubo E
Autoregulation by cooperative binding of the PemI and PemK proteins to the promoter region of the pem operon.
Molecular & general genetics : MGG 1993;237(1-2):81-8.
1993: Maekawa T; Amemura-Maekawa J; Ohtsubo E
DNA binding domains in Tn3 transposase.
Molecular & general genetics : MGG 1993;236(2-3):267-74.
1992: Sekine Y; Ohtsubo E
DNA sequences required for translational frameshifting in production of the transposase encoded by IS1.
Molecular & general genetics : MGG 1992;235(2-3):325-32.
1992: Sekine Y; Nagasawa H; Ohtsubo E
Identification of the site of translational frameshifting required for production of the transposase encoded by insertion sequence IS 1.
Molecular & general genetics : MGG 1992;235(2-3):317-24.
1992: Tsuchimoto S; Nishimura Y; Ohtsubo E
The stable maintenance system pem of plasmid R100: degradation of PemI protein may allow PemK protein to inhibit cell growth.
Journal of bacteriology 1992;174(13):4205-11.
1992: Mochizuki K; Umeda M; Ohtsubo H; Ohtsubo E
Characterization of a plant SINE, p-SINE1, in rice genomes.
Idengaku zasshi 1992;67(2):155-66.
1991: Abo T; Inamoto S; Ohtsubo E
Specific DNA binding of the TraM protein to the oriT region of plasmid R100.
Journal of bacteriology 1991;173(20):6347-54.
1991: Umeda M; Ohtsubo H; Ohtsubo E
Diversification of the rice Waxy gene by insertion of mobile DNA elements into introns.
Idengaku zasshi 1991;66(5):569-86.
1991: Tenzen T; Ohtsubo E
Preferential transposition of an IS630-associated composite transposon to TA in the 5'-CTAG-3' sequence.
Journal of bacteriology 1991;173(19):6207-12.
1991: Amemura-Maekawa J; Ohtsubo E
Functional analysis of the two domains in the terminal inverted repeat sequence required for transposition of Tn3.
Gene 1991;103(1):11-6.
1991: Ohtsubo H; Umeda M; Ohtsubo E
Organization of DNA sequences highly repeated in tandem in rice genomes.
Idengaku zasshi 1991;66(3):241-54.
1991: Inamoto S; Yoshioka Y; Ohtsubo E
Site- and strand-specific nicking in vitro at oriT by the traY-traI endonuclease of plasmid R100.
The Journal of biological chemistry 1991;266(16):10086-92.
1991: Umeda M; Ohtsubo E
Four types of IS1 with differences in nucleotide sequence reside in the Escherichia coli K-12 chromosome.
Gene 1991;98(1):1-5.
1990: Ichikawa H; Ohtsubo E
In vitro transposition of transposon Tn3.
The Journal of biological chemistry 1990;265(31):18829-32.
1990: Maeda Y; Nunomura K; Ohtsubo E
Differential scanning calorimetric study of the effect of intercalators and other kinds of DNA-binding drugs on the stepwise melting of plasmid DNA.
Journal of molecular biology 1990;215(2):321-9.
1990: Yoshioka Y; Fujita Y; Ohtsubo E
Nucleotide sequence of the promoter-distal region of the tra operon of plasmid R100, including traI (DNA helicase I) and traD genes.
Journal of molecular biology 1990;214(1):39-53.
1990: Tenzen T; Matsutani S; Ohtsubo E
Site-specific transposition of insertion sequence IS630.
Journal of bacteriology 1990;172(7):3830-6.
1990: Umeda M; Ohtsubo E
Mapping of insertion element IS30 in the Escherichia coli K12 chromosome.
Molecular & general genetics : MGG 1990;222(2-3):317-22.
1990: Umeda M; Ohtsubo E
Mapping of insertion element IS5 in the Escherichia coli K-12 chromosome. Chromosomal rearrangements mediated by IS5.
Journal of molecular biology 1990;213(2):229-37.
1990: Inamoto S; Ohtsubo E
Specific binding of the TraY protein to oriT and the promoter region for the traY gene of plasmid R100.
The Journal of biological chemistry 1990;265(11):6461-6.
1990: Matsutani S; Ohtsubo E
Complete sequence of IS629.
Nucleic acids research 1990;18(7):1899.
1990: Amemura J; Ichikawa H; Ohtsubo E
Tn3 transposition immunity is conferred by the transposase-binding domain in the terminal inverted-repeat sequence of Tn3.
Gene 1990;88(1):21-4.
1990: Ichikawa H; Ikeda K; Amemura J; Ohtsubo E
Two domains in the terminal inverted-repeat sequence of transposon Tn3.
Gene 1990;86(1):11-7.
1989: Umeda M; Ohtsubo E
Mapping of insertion elements IS1, IS2 and IS3 on the Escherichia coli K-12 chromosome. Role of the insertion elements in formation of Hfrs and F' factors and in rearrangement of bacterial chromosomes.
Journal of molecular biology 1989;208(4):601-14.
1989: Sekine Y; Ohtsubo E
Frameshifting is required for production of the transposase encoded by insertion sequence 1.
Proceedings of the National Academy of Sciences of the United States of America 1989;86(12):4609-13.
1989: Tsuchimoto S; Ohtsubo E
Effect of the pem system on stable maintenance of plasmid R100 in various Escherichia coli hosts.
Molecular & general genetics : MGG 1989;215(3):463-8.
1988: Miyazaki C; Kawai Y; Ohtsubo H; Ohtsubo E
Unidirectional replication of plasmid R100.
Journal of molecular biology 1988;204(2):331-43.
1988: Yamaki H; Ohtsubo E; Nagai K; Maeda Y
The oriC unwinding by dam methylation in Escherichia coli.
Nucleic acids research 1988;16(11):5067-73.
1988: Inamoto S; Yoshioka Y; Ohtsubo E
Identification and characterization of the products from the traJ and traY genes of plasmid R100.
Journal of bacteriology 1988;170(6):2749-57.
1988: Tsuchimoto S; Ohtsubo H; Ohtsubo E
Two genes, pemK and pemI, responsible for stable maintenance of resistance plasmid R100.
Journal of bacteriology 1988;170(4):1461-6.
1988: Maeda Y; Ohtsubo E
Differential scanning calorimetry of antitumor antibiotics-plasmid DNA interaction.
Nucleic acids symposium series 1988;(19):101-4.
1987: Ichikawa H; Ikeda K; Wishart W L; Ohtsubo E
Specific binding of transposase to terminal inverted repeats of transposable element Tn3.
Proceedings of the National Academy of Sciences of the United States of America 1987;84(23):8220-4.
1987: Matsutani S; Ohtsubo H; Maeda Y; Ohtsubo E
Isolation and characterization of IS elements repeated in the bacterial chromosome.
Journal of molecular biology 1987;196(3):445-55.
1987: Maeda Y; Ohtsubo E
Relationship between helix-coil transition and gene organization of ColE1 plasmid DNA. Differential scanning calorimetric and theoretical studies.
Journal of molecular biology 1987;194(4):691-8.

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