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Stephen Oliver

Research Profile

Living Beings

Saccharomyces cerevisiae

Genes & Molecular Sequences

Chemicals & Drugs

Anatomy

Fungal Chromosomes

Occupations

Physiology

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Publications

TOP 3
Douglas B Kell; Elizabeth Bilsland; Paul D Dobson; Stephen G Oliver
The promiscuous binding of pharmaceutical drugs and their transporter-mediated uptake into cells: what we (need to) know and how we can do so.
Elizabeth Bilsland; Mark Carrington; Michaela de Clare; Ross D King; Harry J Moss; Ron Pateman; Pinar Pir; Jem Rowland; Andrew Sparkes; Kevin Williams; Mike Young; Wayne Aubrey; Stephen G Oliver
Yeast-based automated high-throughput screens to identify anti-parasitic lead compounds.
Michaela de Clare; Stephen G Oliver
Copy-number variation of cancer-gene orthologs is sufficient to induce cancer-like symptoms in Saccharomyces cerevisiae.

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All Publications

2013: Douglas B Kell; Elizabeth Bilsland; Paul D Dobson; Stephen G Oliver
The promiscuous binding of pharmaceutical drugs and their transporter-mediated uptake into cells: what we (need to) know and how we can do so.
Drug discovery today 2013;18(5-6):218-39.
2013: Elizabeth Bilsland; Mark Carrington; Michaela de Clare; Ross D King; Harry J Moss; Ron Pateman; Pinar Pir; Jem Rowland; Andrew Sparkes; Kevin Williams; Mike Young; Wayne Aubrey; Stephen G Oliver
Yeast-based automated high-throughput screens to identify anti-parasitic lead compounds.
Open biology 2013;3(2):120158.
2013: Michaela de Clare; Stephen G Oliver
Copy-number variation of cancer-gene orthologs is sufficient to induce cancer-like symptoms in Saccharomyces cerevisiae.
BMC biology 2013;11():24.
2012: Hazel Davey; Daniela Delneri; Konstantinos Gkargkas; Emma J M Cross; Christopher L Davey; David C Hoyle; Douglas B Kell; Stephen G Oliver; Gareth W Griffith
Genome-wide analysis of longevity in nutrient-deprived Saccharomyces cerevisiae reveals importance of recycling in maintaining cell viability.
Environmental microbiology 2012;14(5):1249-60.
2011: Kathleen M Carroll; Warwick B Dunn; Claire E Eyers; Simon J Gaskell; Douglas B Kell; Christopher G Knight; Karin Lanthaler; Naglis Malys; Stephen G Oliver; Pinar Pir; Deborah M Simpson; Catherine L Winder; Philip Brownridge; Robert J Beynon
Absolute quantification of the glycolytic pathway in yeast: deployment of a complete QconCAT approach.
Molecular & cellular proteomics : MCP 2011;10(12):M111.007633.
2011: Ross D King; Maria Liakata; Chuan Lu; Stephen G Oliver; Larisa N Soldatova
On the formalization and reuse of scientific research.
Journal of the Royal Society, Interface / the Royal Society 2011;8(63):1440-8.
2011: Douglas B Kell; Paul D Dobson; Stephen G Oliver
Pharmaceutical drug transport: the issues and the implications that it is essentially carrier-mediated only.
Drug discovery today 2011;16(15-16):704-14.
2011: Balázs Szappanos; Béla Szamecz; Brenda J Andrews; Anastasia Baryshnikova; Charles Boone; Michael Costanzo; Gabriel Gelius-Dietrich; Frantisek Honti; Márk Jelasity; Károly Kovács; Martin J Lercher; Chad L Myers; Stephen G Oliver; Csaba Pál; Balázs Papp
An integrated approach to characterize genetic interaction networks in yeast metabolism.
Nature genetics 2011;43(7):656-62.
2011: Karin Lanthaler; Harry J Moss; Elizabeth Bilsland; Paul D Dobson; Douglas B Kell; Pınar Pir; Stephen G Oliver
Genome-wide assessment of the carriers involved in the cellular uptake of drugs: a model system in yeast.
BMC biology 2011;9():70.
2011: Naglis Malys; Stephen G Oliver; Jill A Wishart; John E G McCarthy
Protein production in Saccharomyces cerevisiae for systems biology studies.
Methods in enzymology 2011;500():197-212.
2010: Walid A M Omara; Bharat M Rash; Andrew Hayes; Martin S J Wickham; Stephen G Oliver; Lubomira Stateva
Conditional cell-wall mutants of Saccharomyces cerevisiae as delivery vehicles for therapeutic agents in vivo to the GI tract.
Journal of biotechnology 2010;147(2):136-43.
2010: Paul D Dobson; Kieran Smallbone; Daniel Jameson; Evangelos Simeonidis; Karin Lanthaler; Pınar Pir; Chuan Lu; Neil Swainston; Warwick B Dunn; Paul Fisher; Duncan Hull; Marie Brown; Olusegun Oshota; Natalie J Stanford; Douglas B Kell; Ross D King; Stephen G Oliver; Robert D Stevens; Pedro Mendes
Further developments towards a genome-scale metabolic model of yeast.
BMC systems biology 2010;4():145.
2010: Michael D Barton; Daniela Delneri; Stephen G Oliver; Magnus Rattray; Casey M Bergman
Evolutionary systems biology of amino acid biosynthetic cost in yeast.
PloS one 2010;5(8):e11935.
2009: Daniel Jameson; David A Turner; John Ankers; Stephnie Kennedy; Sheila Ryan; Neil Swainston; Tony Griffiths; David G Spiller; Stephen G Oliver; Michael R H White; Douglas B Kell; Norman W Paton
Information management for high content live cell imaging.
BMC bioinformatics 2009;10():226.
2009: Paul D Dobson; Karin Lanthaler; Stephen G Oliver; Douglas B Kell
Implications of the dominant role of transporters in drug uptake by cells.
Current topics in medicinal chemistry 2009;9(2):163-81.
2008: Jennifer A Siepen; Khalid Belhajjame; Julian N Selley; Suzanne M Embury; Norman W Paton; Carole Goble; Stephen G Oliver; Robert Stevens; Lucas Zamboulis; Nigel Martin; Alexandra Poulovassillis; Philip Jones; Richard Côté; Henning Hermjakob; Melissa M Pentony; David T Jones; Christine A Orengo; Simon Hubbard
ISPIDER Central: an integrated database web-server for proteomics.
Nucleic acids research 2008;36(Web Server issue):W485-90.
2008: Peter Li; Juan I Castrillo; Giles Velarde; Ingo Wassink; Stian Soiland-Reyes; Stuart Owen; David Withers; Tom Oinn; Matthew R Pocock; Carole Goble; Stephen G Oliver; Douglas B Kell
Performing statistical analyses on quantitative data in Taverna workflows: an example using R and maxdBrowse to identify differentially-expressed genes from microarray data.
BMC bioinformatics 2008;9():334.
2008: Darren M Soanes; Intikhab Alam; Mike Cornell; Han Min Wong; Cornelia Hedeler; Norman W Paton; Magnus Rattray; Simon Hubbard; Stephen G Oliver; Nicholas J Talbot
Comparative genome analysis of filamentous fungi reveals gene family expansions associated with fungal pathogenesis.
PloS one 2008;3(6):e2300.
2008: Daniel Jameson; Kevin L Garwood; Christopher Garwood; Tim Booth; Pinar Alper; Stephen G Oliver; Norman W Paton
Data capture in bioinformatics: requirements and experiences with Pedro.
BMC bioinformatics 2008;9():183.
2008: Daniela Delneri; David C Hoyle; Konstantinos Gkargkas; Emma J M Cross; Bharat Rash; Leo A H Zeef; Hui-Sun Leong; Hazel Davey; Andrew Hayes; Douglas B Kell; Gareth W Griffith; Stephen G Oliver
Identification and characterization of high-flux-control genes of yeast through competition analyses in continuous cultures.
Nature genetics 2008;40(1):113-7.
2007: Michael Cornell; Intikhab Alam; Darren M Soanes; Han Min Wong; Cornelia Hedeler; Norman W Paton; Magnus Rattray; Simon Hubbard; Nicholas J Talbot; Stephen G Oliver
Comparative genome analysis across a kingdom of eukaryotic organisms: specialization and diversification in the fungi.
Genome research 2007;17(12):1809-22.
2007: Andrew R Jones; Michael Miller; Ruedi Aebersold; Rolf Apweiler; Catherine A Ball; Alvis Brazma; James Degreef; Nigel Hardy; Henning Hermjakob; Simon Hubbard; Peter Hussey; Mark Igra; Helen Jenkins; Randall K Julian; Kent Laursen; Stephen G Oliver; Norman W Paton; Susanna-Assunta Sansone; Ugis Sarkans; Christian J Stoeckert; Christopher Taylor; Patricia L Whetzel; Joseph A White; Paul Spellman; Angel Pizarro
The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics.
Nature biotechnology 2007;25(10):1127-33.
2007: Luke Hakes; Simon C Lovell; Stephen G Oliver; David L Robertson
Specificity in protein interactions and its relationship with sequence diversity and coevolution.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(19):7999-8004.
2007: Laura C Edwards-Ingram; Paul Gitsham; Nicola Burton; Geoffrey Warhurst; Ian Clarke; David C Hoyle; Stephen G Oliver; Lubomira Stateva
Genotypic and physiological characterization of Saccharomyces boulardii, the probiotic strain of Saccharomyces cerevisiae.
Applied and environmental microbiology 2007;73(8):2458-67.
2007: Anna Zakrzewska; André Boorsma; Daniela Delneri; Stanley Brul; Stephen G Oliver; Frans Klis
Cellular processes and pathways that protect Saccharomyces cerevisiae cells against the plasma membrane-perturbing compound chitosan.
Eukaryotic cell 2007;6(4):600-8.
2007: Gregory D Amoutzias; A S Veron; January Weiner; Marc Robinson-Rechavi; Erich Bornberg-Bauer; Stephen G Oliver; David L Robertson
One billion years of bZIP transcription factor evolution: conservation and change in dimerization and DNA-binding site specificity.
Molecular biology and evolution 2007;24(3):827-35.
2007: Richard Harrison; Balázs Papp; Csaba Pál; Stephen G Oliver; Daniela Delneri
Plasticity of genetic interactions in metabolic networks of yeast.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(7):2307-12.
2007: Sara Holland; Emma Lodwig; Theodora Sideri; Tom Reader; Ian Clarke; Konstantinos Gkargkas; David C Hoyle; Daniela Delneri; Stephen G Oliver; Simon V Avery
Application of the comprehensive set of heterozygous yeast deletion mutants to elucidate the molecular basis of cellular chromium toxicity.
Genome biology 2007;8(12):R268.
2007: Cornelia Hedeler; Han Min Wong; Michael Cornell; Intikhab Alam; Darren M Soanes; Magnus Rattray; Simon Hubbard; Nicholas J Talbot; Stephen G Oliver; Norman W Paton
e-Fungi: a data resource for comparative analysis of fungal genomes.
BMC genomics 2007;8():426.
2007: Luke Hakes; John W Pinney; Simon C Lovell; Stephen G Oliver; David L Robertson
All duplicates are not equal: the difference between small-scale and genome duplication.
Genome biology 2007;8(10):R209.
2007: Gregory D Amoutzias; Elgar E Pichler; Nina Mian; David de Graaf; Anastasia Imsiridou; Marc Robinson-Rechavi; Erich Bornberg-Bauer; David L Robertson; Stephen G Oliver
A protein interaction atlas for the nuclear receptors: properties and quality of a hub-based dimerisation network.
BMC systems biology 2007;1():34.
2007: Luke Hakes; David L Robertson; Stephen G Oliver; Simon C Lovell
Protein interactions from complexes: a structural perspective.
Comparative and functional genomics 2007;():49356.
2007: Juan I Castrillo; Leo A H Zeef; David C Hoyle; Nianshu Zhang; Andrew Hayes; David Cj Gardner; Michael Cornell; June Petty; Luke Hakes; Leanne Wardleworth; Bharat Rash; Marie Brown; Warwick B Dunn; David Broadhurst; Kerry O'Donoghue; Svenja S Hester; Tom P J Dunkley; Sarah Hart; Neil Swainston; Peter Li; Simon J Gaskell; Norman W Paton; Kathryn S Lilley; Douglas B Kell; Stephen G Oliver
Growth control of the eukaryote cell: a systems biology study in yeast.
Journal of biology 2007;6(2):4.
2007: Intikhab Alam; Simon Hubbard; Stephen G Oliver; Magnus Rattray
A kingdom-specific protein domain HMM library for improved annotation of fungal genomes.
BMC genomics 2007;8():97.
2006: Hailin Shen; Glyn Nelson; David E Nelson; Stephnie Kennedy; David G Spiller; Tony Griffiths; Norman Paton; Stephen G Oliver; Michael R H White; Douglas B Kell
Automated tracking of gene expression in individual cells and cell compartments.
Journal of the Royal Society, Interface / the Royal Society 2006;3(11):787-94.
2006: Csaba Pál; Balázs Papp; Martin J Lercher; Péter Csermely; Stephen G Oliver; Laurence D Hurst
Chance and necessity in the evolution of minimal metabolic networks.
Nature 2006;440(7084):667-70.
2006: Stephen G Oliver
From genomes to systems: the path with yeast.
Philosophical transactions of the Royal Society of London. Series B, Biological sciences 2006;361(1467):477-82.
2006: Jill A Wishart; Michael Osborn; Manda E Gent; Kuangyu Yen; Zorana Vujovic; Paul Gitsham; Nianshu Zhang; J Ross Miller; Stephen G Oliver
The relative merits of the tetO2 and tetO7 promoter systems for the functional analysis of heterologous genes in yeast and a compilation of essential yeast genes with tetO2 promoter substitutions.
Yeast (Chichester, England) 2006;23(4):325-31.
2006: Kevin L Garwood; Christopher Garwood; Cornelia Hedeler; Tony Griffiths; Neil Swainston; Stephen G Oliver; Norman W Paton
Model-driven user interfaces for bioinformatics data resources: regenerating the wheel as an alternative to reinventing it.
BMC bioinformatics 2006;7():532.
2006: Irena Spasić; Warwick B Dunn; Giles Velarde; Andy Tseng; Helen Jenkins; Nigel Hardy; Stephen G Oliver; Douglas B Kell
MeMo: a hybrid SQL/XML approach to metabolomic data management for functional genomics.
BMC bioinformatics 2006;7():281.
2006: Gregory D Amoutzias; Erich Bornberg-Bauer; Stephen G Oliver; David L Robertson
Reduction/oxidation-phosphorylation control of DNA binding in the bZIP dimerization network.
BMC genomics 2006;7():107.
2005: Douglas B Kell; Marie Brown; Hazel Davey; Warwick B Dunn; Irena Spasic; Stephen G Oliver
Metabolic footprinting and systems biology: the medium is the message.
Nature reviews. Microbiology 2005;3(7):557-65.
2005: Jill A Wishart; Andrew Hayes; Leanne Wardleworth; Nianshu Zhang; Stephen G Oliver
Doxycycline, the drug used to control the tet-regulatable promoter system, has no effect on global gene expression in Saccharomyces cerevisiae.
Yeast (Chichester, England) 2005;22(7):565-9.
2005: Andrew Sims; Manda E Gent; Karin Lanthaler; Nigel S Dunn-Coleman; Stephen G Oliver; Geoff Robson
Transcriptome analysis of recombinant protein secretion by Aspergillus nidulans and the unfolded-protein response in vivo.
Applied and environmental microbiology 2005;71(5):2737-47.
2005: Harald Jungnickel; Emrys A Jones; Nicholas P Lockyer; Stephen G Oliver; Gill Stephens; John C Vickerman
Application of TOF-SIMS with chemometrics to discriminate between four different yeast strains from the species Candida glabrata and Saccharomyces cerevisiae.
Analytical chemistry 2005;77(6):1740-5.
2005: Luke Hakes; David L Robertson; Stephen G Oliver
Effect of dataset selection on the topological interpretation of protein interaction networks.
BMC genomics 2005;6():131.
2004: Helen Jenkins; Nigel Hardy; Manfred Beckmann; John Draper; Aileen R Smith; Janet Taylor; Oliver Fiehn; Royston Goodacre; Raoul J Bino; Robert Hall; Joachim Kopka; Geoffrey A Lane; B Markus Lange; Jang R Liu; Pedro Mendes; Basil J Nikolau; Stephen G Oliver; Norman W Paton; Sue Rhee; Ute Roessner-Tunali; Kazuki Saito; Jørn Smedsgaard; Lloyd Sumner; Trevor Wang; Sean Walsh; Eve Syrkin Wurtele; Douglas B Kell
A proposed framework for the description of plant metabolomics experiments and their results.
Nature biotechnology 2004;22(12):1601-6.
2004: Patrick G A Pedrioli; Jimmy K Eng; Robert Hubley; Mathijs Vogelzang; Eric Deutsch; Brian Raught; Brian Pratt; Erik Nilsson; Ruth Hogue Angeletti; Rolf Apweiler; Kei Cheung; Catherine E Costello; Henning Hermjakob; Sequin Huang; Randall K Julian; Eugene Kapp; Mark E McComb; Stephen G Oliver; Gilbert S Omenn; Norman W Paton; Richard Simpson; Richard Smith; Christopher Taylor; Weimin Zhu; Ruedi Aebersold
A common open representation of mass spectrometry data and its application to proteomics research.
Nature biotechnology 2004;22(11):1459-66.
2004: Kevin L Garwood; Christopher Taylor; Kai J Runte; Andrew Brass; Stephen G Oliver; Norman W Paton
Pedro: a configurable data entry tool for XML.
Bioinformatics (Oxford, England) 2004;20(15):2463-5.
2004: Jess Allen; Hazel Davey; David Broadhurst; Jem J Rowland; Stephen G Oliver; Douglas B Kell
Discrimination of modes of action of antifungal substances by use of metabolic footprinting.
Applied and environmental microbiology 2004;70(10):6157-65.
2004: Andrew Sims; Nigel S Dunn-Coleman; Geoff Robson; Stephen G Oliver
Glutamic protease distribution is limited to filamentous fungi.
FEMS microbiology letters 2004;239(1):95-101.
2004: Kevin L Garwood; Thomas McLaughlin; Christopher Garwood; Scott Joens; Norman Morrison; Christopher Taylor; Kathleen Carroll; Caroline Evans; Anthony D Whetton; Sarah Hart; David Stead; Zhikang Yin; Alistair J P Brown; Andy Hesketh; Keith F Chater; Lena Hansson; Muriel Mewissen; Peter Ghazal; Julie Howard; Kathryn S Lilley; Simon J Gaskell; Andrew Brass; Simon Hubbard; Stephen G Oliver; Norman W Paton
PEDRo: a database for storing, searching and disseminating experimental proteomics data.
BMC genomics 2004;5():68.
2004: Andrew Sims; Manda E Gent; Geoff Robson; Nigel S Dunn-Coleman; Stephen G Oliver
Combining transcriptome data with genomic and cDNA sequence alignments to make confident functional assignments for Aspergillus nidulans genes.
Mycological research 2004;108(Pt 8):853-7.
2004: Zhikang Yin; David Stead; Laura Selway; Janet Walker; Isabel Riba; Tracey McLnerney; Simon J Gaskell; Stephen G Oliver; Phillip Cash; Alistair J P Brown
Proteomic response to amino acid starvation in Candida albicans and Saccharomyces cerevisiae.
Proteomics 2004;4(8):2425-36.
2004: Laura C Edwards-Ingram; Manda E Gent; David C Hoyle; Andrew Hayes; Lubomira Stateva; Stephen G Oliver
Comparative genomic hybridization provides new insights into the molecular taxonomy of the Saccharomyces sensu stricto complex.
Genome research 2004;14(6):1043-51.
2004: Isabelle Colson; Daniela Delneri; Stephen G Oliver
Effects of reciprocal chromosomal translocations on the fitness of Saccharomyces cerevisiae.
EMBO reports 2004;5(4):392-8.
2004: Jian Wu; Nianshu Zhang; Andrew Hayes; Kalliope Panoutsopoulou; Stephen G Oliver
Global analysis of nutrient control of gene expression in Saccharomyces cerevisiae during growth and starvation.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(9):3148-53.
2004: Gregory D Amoutzias; David L Robertson; Stephen G Oliver; Erich Bornberg-Bauer
Convergent evolution of gene networks by single-gene duplications in higher eukaryotes.
EMBO reports 2004;5(3):274-9.
2004: Andrew Sims; Geoff Robson; David C Hoyle; Stephen G Oliver; Geoffrey Turner; Rolf A Prade; Hugh H Russell; Nigel S Dunn-Coleman; Manda E Gent
Use of expressed sequence tag analysis and cDNA microarrays of the filamentous fungus Aspergillus nidulans.
Fungal genetics and biology : FG & B 2004;41(2):199-212.
2004: Juan I Castrillo; Stephen G Oliver
Yeast as a touchstone in post-genomic research: strategies for integrative analysis in functional genomics.
Journal of biochemistry and molecular biology 2004;37(1):93-106.
2004: Ross D King; Kenneth E Whelan; Ffion M Jones; Philip G K Reiser; Christopher H Bryant; Stephen H Muggleton; Douglas B Kell; Stephen G Oliver
Functional genomic hypothesis generation and experimentation by a robot scientist.
Nature 2004;427(6971):247-52.
2004: Michael Cornell; Norman W Paton; Stephen G Oliver
A critical and integrated view of the yeast interactome.
Comparative and functional genomics 2004;5(5):382-402.
2004: Dawn L Jones; June Petty; David C Hoyle; Andrew Hayes; Stephen G Oliver; Isabel Riba; Simon J Gaskell; Lubomira Stateva
Genome-wide analysis of the effects of heat shock on a Saccharomyces cerevisiae mutant with a constitutively activated cAMP-dependent pathway.
Comparative and functional genomics 2004;5(5):419-31.
2004: JE Mabey; Michael J Anderson; P F Giles; C J Miller; Teresa K Attwood; Norman W Paton; Erich Bornberg-Bauer; Geoff Robson; Stephen G Oliver; David W Denning
CADRE: the Central Aspergillus Data REpository.
Nucleic acids research 2004;32(Database issue):D401-5.
2003: D L Jones; J Petty; David C Hoyle; Andrew Hayes; Enrico Ragni; Laura Popolo; Stephen G Oliver; Lubomira Stateva
Transcriptome profiling of a Saccharomyces cerevisiae mutant with a constitutively activated Ras/cAMP pathway.
Physiological genomics 2003;16(1):107-18.
2003: Michael Cornell; Norman W Paton; Cornelia Hedeler; Paul Kirby; Daniela Delneri; Andrew Hayes; Stephen G Oliver
GIMS: an integrated data storage and analysis environment for genomic and functional data.
Yeast (Chichester, England) 2003;20(15):1291-306.
2003: Kuangyu Yen; Paul Gitsham; Jill Wishart; Stephen G Oliver; Nianshu Zhang
An improved tetO promoter replacement system for regulating the expression of yeast genes.
Yeast (Chichester, England) 2003;20(15):1255-62.
2003: Yongxiang Fang; Andrew Brass; David C Hoyle; Andrew Hayes; Abdulla Masood Bashein; Stephen G Oliver; David Waddington; Magnus Rattray
A model-based analysis of microarray experimental error and normalisation.
Nucleic acids research 2003;31(16):e96.
2003: Paul E Boardman; Stephen G Oliver; Simon Hubbard
SiteSeer: Visualisation and analysis of transcription factor binding sites in nucleotide sequences.
Nucleic acids research 2003;31(13):3572-5.
2003: Jess Allen; Hazel Davey; David Broadhurst; Jim K Heald; Jem J Rowland; Stephen G Oliver; Douglas B Kell
High-throughput classification of yeast mutants for functional genomics using metabolic footprinting.
Nature biotechnology 2003;21(6):692-6.
2003: Daniela Delneri; Isabelle Colson; Sofia Grammenoudi; Ian N Roberts; Edward J Louis; Stephen G Oliver
Engineering evolution to study speciation in yeasts.
Nature 2003;422(6927):68-72.
2003: Christopher Taylor; Norman W Paton; Kevin L Garwood; Paul D Kirby; David Stead; Zhikang Yin; Eric Deutsch; Laura Selway; Janet Walker; Isabel Riba; shabaz mohammed; Michael J Deery; Julie A Howard; Tom P J Dunkley; Ruedi Aebersold; Douglas B Kell; Kathryn S Lilley; Peter Roepstorff; John R Yates; Andrew Brass; Alistair J P Brown; Phillip Cash; Simon J Gaskell; Simon Hubbard; Stephen G Oliver
A systematic approach to modeling, capturing, and disseminating proteomics experimental data.
Nature biotechnology 2003;21(3):247-54.
2003: Juan I Castrillo; Andrew Hayes; shabaz mohammed; Simon J Gaskell; Stephen G Oliver
An optimized protocol for metabolome analysis in yeast using direct infusion electrospray mass spectrometry.
Phytochemistry 2003;62(6):929-37.
2003: Nianshu Zhang; Michael Osborn; Paul Gitsham; Kuangyu Yen; J Ross Miller; Stephen G Oliver
Using yeast to place human genes in functional categories.
Gene 2003;303():121-9.
2003: Fei Ling Lim; Andrew Hayes; Adam G West; Aline Pic-Taylor; Zoulfia Darieva; Brian A Morgan; Stephen G Oliver; Andrew D Sharrocks
Mcm1p-induced DNA bending regulates the formation of ternary transcription factor complexes.
Molecular and cellular biology 2003;23(2):450-61.
2002: Julie M Pratt; June Petty; Isabel Riba; Duncan H L Robertson; Simon J Gaskell; Stephen G Oliver; Robert Beynon
Dynamics of protein turnover, a missing dimension in proteomics.
Molecular & cellular proteomics : MCP 2002;1(8):579-91.
2002: Christian von Mering; Roland Krause; Berend Snel; Michael Cornell; Stephen G Oliver; Stanley Fields; Peer Bork
Comparative assessment of large-scale data sets of protein-protein interactions.
Nature 2002;417(6887):399-403.
2002: Lesley Lockhart; Stephen G Oliver; Daniela Delneri
Tools for the study of genome rearrangements in laboratory and industrial yeast strains.
Yeast (Chichester, England) 2002;19(5):441-8.
2002: Andrew Hayes; Nianshu Zhang; Jian Wu; Philip R Butler; Nicole C Hauser; Jörg D Hoheisel; Fei Ling Lim; Andrew D Sharrocks; Stephen G Oliver
Hybridization array technology coupled with chemostat culture: Tools to interrogate gene expression in Saccharomyces cerevisiae.
Methods (San Diego, Calif.) 2002;26(3):281-90.
2002: Julie M Pratt; Duncan H L Robertson; Simon J Gaskell; Isabel Riba; Simon Hubbard; Khushwant Sidhu; Stephen G Oliver; Philip Butler; Andrew Hayes; June Petty; Robert Beynon
Stable isotope labelling in vivo as an aid to protein identification in peptide mass fingerprinting.
Proteomics 2002;2(2):157-63.
2002: Stephen G Oliver
Functional genomics: lessons from yeast.
Philosophical transactions of the Royal Society of London. Series B, Biological sciences 2002;357(1417):17-23.
2001: K S Sidhu; Polkit Sangvanich; Francesco L Brancia; A G Sullivan; Simon J Gaskell; O Wolkenhaue; Stephen G Oliver; Simon Hubbard
Bioinformatic assessment of mass spectrometric chemical derivatisation techniques for proteome database searching.
Proteomics 2001;1(11):1368-77.
2001: Alistair J P Brown; RJ Planta; F Restuhadi; D A Bailey; Philip R Butler; J L Cadahia; M E Cerdan; M de Jonge; David Cj Gardner; M E Gent; Andrew Hayes; CP Kolen; L J Lombardia; AM Murad; R A Oliver; M Sefton; Johan M Thevelein; Helene Tournu; YJ Van Delft; D J Verbart; Joris Winderickx; Stephen G Oliver
Transcript analysis of 1003 novel yeast genes using high-throughput northern hybridizations.
The EMBO journal 2001;20(12):3177-86.
2001: GC Tomlin; JL Wixon; M Bolotin-Fukuhara; Stephen G Oliver
A new family of yeast vectors and S288C-derived strains for the systematic analysis of gene function.
Yeast (Chichester, England) 2001;18(6):563-75.
2001: Nianshu Zhang; C Merlotti; Jian Wu; T Ismail; AN El-Moghazy; S A Khan; Amna Butt; David Cj Gardner; Paul F G Sims; Stephen G Oliver
Functional Analysis of six novel ORFs on the left arm of Chromosome XII of Saccharomyces cerevisiae reveals three of them responding to S-starvation.
Yeast (Chichester, England) 2001;18(4):325-34.
2001: Francesco L Brancia; Amna Butt; Robert Beynon; Simon Hubbard; Simon J Gaskell; Stephen G Oliver
A combination of chemical derivatisation and improved bioinformatic tools optimises protein identification for proteomics.
Electrophoresis 2001;22(3):552-9.
2001: Daniela Delneri; Francesco L Brancia; Stephen G Oliver
Towards a truly integrative biology through the functional genomics of yeast.
Current opinion in biotechnology 2001;12(1):87-91.
2001: Amna Butt; M D Davison; G J Smith; J A Young; Simon J Gaskell; Stephen G Oliver; Robert Beynon
Chromatographic separations as a prelude to two-dimensional electrophoresis in proteomics analysis.
Proteomics 2001;1(1):42-53.
2001: Léonie M Raamsdonk; Bas Teusink; David Broadhurst; N Zhang; Andrew Hayes; Michael C Walsh; Jan A Berden; K M Brindle; D B Kell; Jem J Rowland; Hans V Westerhoff; Karel van Dam; Stephen G Oliver
A functional genomics strategy that uses metabolome data to reveal the phenotype of silent mutations.
Nature biotechnology 2001;19(1):45-50.
2000: S Ahmed Khan; Nianshu Zhang; T Ismail; AN El-Moghazy; Amna Butt; Jian Wu; C Merlotti; Andrew Hayes; David Cj Gardner; Stephen G Oliver
Functional analysis of eight open reading frames on chromosomes XII and XIV of Saccharomyces cerevisiae.
Yeast (Chichester, England) 2000;16(16):1457-68.
2000: GC Tomlin; G E Hamilton; David Cj Gardner; Richard M Walmsley; Lubomira Stateva; Stephen G Oliver
Suppression of sorbitol dependence in a strain bearing a mutation in the SRB1/PSA1/VIG9 gene encoding GDP-mannose pyrophosphorylase by PDE2 overexpression suggests a role for the Ras/cAMP signal-transduction pathway in the control of yeast cell-wall biogenesis.
Microbiology (Reading, England) 2000;146 ( Pt 9)():2133-46.
2000: Daniela Delneri; GC Tomlin; JL Wixon; A Hutter; M Sefton; Edward J Louis; Stephen G Oliver
Exploring redundancy in the yeast genome: an improved strategy for use of the cre-loxP system.
Gene 2000;252(1-2):127-35.
2000: Norman W Paton; S A Khan; Andrew Hayes; F Moussouni; Andrew Brass; K Eilbeck; Carole Goble; Simon Hubbard; Stephen G Oliver
Conceptual modelling of genomic information.
Bioinformatics (Oxford, England) 2000;16(6):548-57.
2000: S Warit; Nianshu Zhang; A Short; Richard M Walmsley; Stephen G Oliver; Lubomira Stateva
Glycosylation deficiency phenotypes resulting from depletion of GDP-mannose pyrophosphorylase in two yeast species.
Molecular microbiology 2000;36(5):1156-66.
2000: G Fischer; Steve A James; Ian N Roberts; Stephen G Oliver; Edward J Louis
Chromosomal evolution in Saccharomyces.
Nature 2000;405(6785):451-4.
2000: AN El-Moghazy; Nianshu Zhang; T Ismail; Jian Wu; Amna Butt; S Ahmed Khan; C Merlotti; K Cara Woodwark; David Cj Gardner; Simon J Gaskell; Stephen G Oliver
Functional analysis of six novel ORFs on the left arm of chromosome XII in Saccharomyces cerevisiae reveals two essential genes, one of which is under cell-cycle control.
Yeast (Chichester, England) 2000;16(3):277-88.
2000: Francesco L Brancia; Stephen G Oliver; Simon J Gaskell
Improved matrix-assisted laser desorption/ionization mass spectrometric analysis of tryptic hydrolysates of proteins following guanidination of lysine-containing peptides.
Rapid communications in mass spectrometry : RCM 2000;14(21):2070-3.
1999: Daniela Delneri; David Cj Gardner; Stephen G Oliver
Analysis of the seven-member AAD gene set demonstrates that genetic redundancy in yeast may be more apparent than real.
Genetics 1999;153(4):1591-600.
1999: P G Lane; Stephen G Oliver; Philip R Butler
Analysis of a continuous-culture technique for the selection of mutants tolerant to extreme environmental stress.
Biotechnology and bioengineering 1999;65(4):397-406.
1999: P G Lane; A Hutter; Stephen G Oliver; Philip R Butler
Selection of microbial mutants tolerant to extreme environmental stress using continuous culture-control design.
Biotechnology progress 1999;15(6):1115-24.
1999: Daniela Delneri; David Cj Gardner; Carlo V Bruschi; Stephen G Oliver
Disruption of seven hypothetical aryl alcohol dehydrogenase genes from Saccharomyces cerevisiae and construction of a multiple knock-out strain.
Yeast (Chichester, England) 1999;15(15):1681-9.
1999: Nianshu Zhang; T Ismail; Jian Wu; K C Woodwark; David Cj Gardner; Richard M Walmsley; Stephen G Oliver
Disruption of six novel ORFs on the left arm of chromosome XII reveals one gene essential for vegetative growth of Saccharomyces cerevisiae.
Yeast (Chichester, England) 1999;15(12):1287-96.
1999: Nianshu Zhang; David Cj Gardner; Stephen G Oliver; Lubomira Stateva
Genetically controlled cell lysis in the yeast Saccharomyces cerevisiae.
Biotechnology and bioengineering 1999;64(5):607-15.
1999: RJ Planta; Alistair J P Brown; J L Cadahia; M E Cerdan; M de Jonge; M E Gent; Andrew Hayes; CP Kolen; L J Lombardia; M Sefton; Stephen G Oliver; Johan M Thevelein; Helene Tournu; YJ Van Delft; D J Verbart; Joris Winderickx
Transcript analysis of 250 novel yeast genes from chromosome XIV.
Yeast (Chichester, England) 1999;15(4):329-50.
1999: Nianshu Zhang; David Cj Gardner; Stephen G Oliver; Lubomira Stateva
Down-regulation of the expression of PKC1 and SRB1/PSA1/VIG9, two genes involved in cell wall integrity in Saccharomyces cerevisiae, causes flocculation.
Microbiology (Reading, England) 1999;145 ( Pt 2)():309-16.
1998: J H Kanan; Simon Hubbard; S J Minter; Stephen G Oliver
Use of fortuitous in vitro mutations in a synthetic Cu-Zn superoxide dismutase gene to illuminate protein structure-function relationships.
Protein engineering 1998;11(11):1083-8.
1998: F Baganz; Andrew Hayes; R Farquhar; Philip R Butler; David Cj Gardner; Stephen G Oliver
Quantitative analysis of yeast gene function using competition experiments in continuous culture.
Yeast (Chichester, England) 1998;14(15):1417-27.
1998: Stephen G Oliver; Michael K Winson; D B Kell; F Baganz
Systematic functional analysis of the yeast genome.
Trends in biotechnology 1998;16(9):373-8.
1998: A Hutter; Stephen G Oliver
Ethanol production using nuclear petite yeast mutants.
Applied microbiology and biotechnology 1998;49(5):511-6.
1997: F Baganz; Andrew Hayes; D Marren; David Cj Gardner; Stephen G Oliver
Suitability of replacement markers for functional analysis studies in Saccharomyces cerevisiae.
Yeast (Chichester, England) 1997;13(16):1563-73.
1997: Andrew Hayes; G Hobbs; C P Smith; Stephen G Oliver; Philip R Butler
Environmental signals triggering methylenomycin production by Streptomyces coelicolor A3(2).
Journal of bacteriology 1997;179(17):5511-5.
1997: G Ribeiro-dos-Santos; A C Schenberg; David Cj Gardner; Stephen G Oliver
Enhancement of Ty transposition at the ADH4 and ADH2 loci in meiotic yeast cells.
Molecular & general genetics : MGG 1997;254(5):555-61.
1996: N Shahab; F Flett; Stephen G Oliver; Philip R Butler
Growth rate control of protein and nucleic acid content in Streptomyces coelicolor A3(2) and Escherichia coli B/r.
Microbiology (Reading, England) 1996;142 ( Pt 8)():1927-35.
1996: Marilyn G Wiebe; Geoff Robson; Stephen G Oliver; Anthony P J Trinci
pH oscillations and constant low pH delay the appearance of highly branched (colonial) mutants in chemostat cultures of the quorn(R) myco-protein fungus, Fusarium graminearum A3/5.
Biotechnology and bioengineering 1996;51(1):61-8.
1996: David Cj Gardner; G C Tomlin; T Cele; G A Hamilton; C M James; Lubomira Stateva; Stephen G Oliver
Physical mapping of a centromere-proximal region of chromosome IV-L defines the placement of genes USO1, MBP1, PSA1 and SLC1.
Yeast (Chichester, England) 1996;12(4):411-3.
1996: Stephen G Oliver
From DNA sequence to biological function.
Nature 1996;379(6566):597-600.
1996: Philip R Butler; M Brown; Stephen G Oliver
Improvement of antibiotic titers from Streptomyces bacteria by interactive continuous selection.
Biotechnology and bioengineering 1996;49(2):185-96.
1995: L M de Moraes; S Astolfi-Filho; Stephen G Oliver
Development of yeast strains for the efficient utilisation of starch: evaluation of constructs that express alpha-amylase and glucoamylase separately or as bifunctional fusion proteins.
Applied microbiology and biotechnology 1995;43(6):1067-76.
1995: C M James; K J Indge; Stephen G Oliver
DNA sequence analysis of a 35 kb segment from Saccharomyces cerevisiae chromosome VII reveals 19 open reading frames including RAD54, ACE1/CUP2, PMR1, RCK1, AMS1 and CAL1/CDC43.
Yeast (Chichester, England) 1995;11(14):1413-9.
1995: S T Van der Sand; W Greenhalf; David Cj Gardner; Stephen G Oliver
The maintenance of self-replicating plasmids in Saccharomyces cerevisiae: mathematical modelling, computer simulations and experimental tests.
Yeast (Chichester, England) 1995;11(7):641-58.
1994: S M Heale; Lubomira Stateva; Stephen G Oliver
Introduction of YACs into intact yeast cells by a procedure which shows low levels of recombinagenicity and co-transformation.
Nucleic acids research 1994;22(23):5011-5.
1994: Marilyn G Wiebe; Geoff Robson; Stephen G Oliver; Anthony P J Trinci
Evolution of Fusarium graminearum A3/5 grown in a glucose-limited chemostat culture at a slow dilution rate.
Microbiology (Reading, England) 1994;140 ( Pt 11)():3023-9.
1994: Marilyn G Wiebe; Geoff Robson; Stephen G Oliver; Anthony P J Trinci
Use of a series of chemostat cultures to isolate 'improved' variants of the Quorn mycoprotein fungus, Fusarium graminearum A3/5.
Microbiology (Reading, England) 1994;140 ( Pt 11)():3015-21.
1994: M S Musialowski; F Flett; G B Scott; G Hobbs; C P Smith; Stephen G Oliver
Functional evidence that the principal DNA replication origin of the Streptomyces coelicolor chromosome is close to the dnaA-gyrB region.
Journal of bacteriology 1994;176(16):5123-5.
1994: C M James; M E Gent; Stephen G Oliver
Sequence analysis of a 3.5 Kb EcoRI fragment from the left arm of Saccharomyces cerevisiae chromosome XI reveals the location of the MBR1 gene and a sequence related to a GTPase-activating protein.
Yeast (Chichester, England) 1994;10(2):257-64.
1994: C M James; M E Gent; K J Indge; Stephen G Oliver
Sequence analysis of a 10 kb fragment of yeast chromosome XI identifies the SMY1 locus and reveals sequences related to a pre-mRNA splicing factor and vacuolar ATPase subunit C plus a number of unidentified open reading frames.
Yeast (Chichester, England) 1994;10(2):247-55.
1994: B L Wicksteed; I Collins; A Dershowitz; Lubomira Stateva; R P Green; Stephen G Oliver; Alistair J P Brown; Carol Newlon
A physical comparison of chromosome III in six strains of Saccharomyces cerevisiae.
Yeast (Chichester, England) 1994;10(1):39-57.
1993: Marilyn G Wiebe; Geoff Robson; B Cunliffe; Stephen G Oliver; Anthony P J Trinci
Periodic selection in longterm continuous-flow cultures of the filamentous fungus Fusarium graminearum.
Journal of general microbiology 1993;139(11):2811-7.
1993: David Cj Gardner; S M Heale; Lubomira Stateva; Stephen G Oliver
Treatment of yeast cells with wall lytic enzymes is not required to prepare chromosomes for pulsed-field gel analysis.
Yeast (Chichester, England) 1993;9(10):1053-5.
1992: M A Ayub; S Astolfi-Filho; F Mavituna; Stephen G Oliver
Studies on plasmid stability, cell metabolism and superoxide dismutase production by Pgk- strains of Saccharomyces cerevisiae.
Applied microbiology and biotechnology 1992;37(5):615-20.
1992: Stephen G Oliver; Q J van der Aart; M L Agostoni-Carbone; Michel Aigle; L Alberghina; Despina Alexandraki; G Antoine; Rashida Anwar; Juan P G Ballesta; P Benit
The complete DNA sequence of yeast chromosome III.
Nature 1992;357(6373):38-46.
1992: S B Rech; Lubomira Stateva; Stephen G Oliver
Complementation of the Saccharomyces cerevisiae srb1-1 mutation: an autoselection system for stable plasmid maintenance.
Current genetics 1992;21(4-5):339-44.
1992: G Hobbs; A I Obanye; J Petty; J C Mason; E Barratt; David Cj Gardner; F Flett; C P Smith; P Broda; Stephen G Oliver
An integrated approach to studying regulation of production of the antibiotic methylenomycin by Streptomyces coelicolor A3(2).
Journal of bacteriology 1992;174(5):1487-94.
1992: F Flett; J Platt; Stephen G Oliver
Isolation and characterization of temperature-sensitive mutants of Streptomyces coelicolor A3(2) blocked in macromolecular synthesis.
Journal of general microbiology 1992;138(3):579-85.
1991: Lubomira Stateva; Stephen G Oliver; L J Trueman; Pencho Venkov
Cloning and characterization of a gene which determines osmotic stability in Saccharomyces cerevisiae.
Molecular and cellular biology 1991;11(8):4235-43.
1991: A Schrank; C Tempelaars; Paul F G Sims; Stephen G Oliver; P Broda
The trpC gene of Phanerochaete chrysosporium is unique in containing an intron but nevertheless maintains the order of functional domains seen in other fungi.
Molecular microbiology 1991;5(2):467-76.
1991: N Danhash; David Cj Gardner; Stephen G Oliver
Heritable damage to yeast caused by transformation.
Bio/technology (Nature Publishing Company) 1991;9(2):179-82.
1988: I S Schrank; Paul F G Sims; Stephen G Oliver
Functional expression of the yeast Mn-superoxide dismutase gene in Escherichia coli requires deletion of the signal peptide sequence.
Gene 1988;73(1):121-30.
1988: J R Warmington; Stephen G Oliver
A downstream activator sequence regulates the expression of the yeast transposon.
Current genetics 1988;13(5):357-62.
1987: J R Warmington; R P Green; Carol Newlon; Stephen G Oliver
Polymorphisms on the right arm of yeast chromosome III associated with Ty transposition and recombination events.
Nucleic acids research 1987;15(21):8963-82.
1986: D J Mead; David Cj Gardner; Stephen G Oliver
The yeast 2 micron plasmid: strategies for the survival of a selfish DNA.
Molecular & general genetics : MGG 1986;205(3):417-21.
1986: A Thompson; Stephen G Oliver
Physical separation and functional interaction of Kluyveromyces lactis and Saccharomyces cerevisiae ARS elements derived from killer plasmid DNA.
Yeast (Chichester, England) 1986;2(3):179-91.
1986: T G Palzkill; Stephen G Oliver; Carol Newlon
DNA sequence analysis of ARS elements from chromosome III of Saccharomyces cerevisiae: identification of a new conserved sequence.
Nucleic acids research 1986;14(15):6247-64.
1986: J R Warmington; Rashida Anwar; Carol Newlon; R B Waring; Roger Wayne Davies; K J Indge; Stephen G Oliver
A 'hot-spot' for Ty transposition on the left arm of yeast chromosome III.
Nucleic acids research 1986;14(8):3475-85.
1986: J J Clare; L S Davidow; David Cj Gardner; Stephen G Oliver
Cloning and characterisation of the ribosomal RNA genes of the dimorphic yeast, Yarrowia lipolytica.
Current genetics 1986;10(6):449-52.
1985: J R Warmington; R B Waring; Carol Newlon; K J Indge; Stephen G Oliver
Nucleotide sequence characterization of Ty 1-17, a class II transposon from yeast.
Nucleic acids research 1985;13(18):6679-93.
1985: A M Fulton; J Mellor; M J Dobson; J Chester; J R Warmington; K J Indge; Stephen G Oliver; P de la Paz; W Wilson; Alan J Kingsman
Variants within the yeast Ty sequence family encode a class of structurally conserved proteins.
Nucleic acids research 1985;13(11):4097-112.
1985: M E Gent; P Crowley; J R Ludwig; Rashida Anwar; D A Sugden; Paul F G Sims; Stephen G Oliver
An E. coli-yeast shuttle cosmid with positive selection for inserted fragments.
Current genetics 1985;10(1):29-33.
1984: R M Walmsley; L H Johnston; D H Williamson; Stephen G Oliver
Replicon size of yeast ribosomal DNA.
Molecular & general genetics : MGG 1984;195(1-2):260-6.
1983: R M Walmsley; David Cj Gardner; Stephen G Oliver
Stability of a cloned gene in yeast grown in chemostat culture.
Molecular & general genetics : MGG 1983;192(3):361-5.
1982: J J Clare; Stephen G Oliver
The regulation of RNA synthesis in yeast. V. tRNA charging studies.
Molecular & general genetics : MGG 1982;188(1):96-102.