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Tatiana Oretskaya

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Escherichia coli

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Nina G Dolinnaya; Elena A Kubareva; Elena A Romanova; Roman M Trikin; Tatiana S Oretskaya
Thymidine glycol: the effect on DNA molecular structure and enzymatic processing.
Roger J Heinze; Elena Kubareva; Tatiana S Oretskaya; Svetlana Sekerina; Ines Winkler; Christian Biertümpfel; Peter Friedhoff
Covalently trapping MutS on DNA to study DNA mismatch recognition and signaling.
Le Thi Hien; Elena A Kubareva; Alfred Pingoud; Benno Schierling; Eugene M Volkov; Wolfgang Wende; Timofei S Zatsepin; Tatiana S Oretskaya
Restriction endonuclease SsoII with photoregulated activity--a "molecular gate" approach.

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2013: Nina G Dolinnaya; Elena A Kubareva; Elena A Romanova; Roman M Trikin; Tatiana S Oretskaya
Thymidine glycol: the effect on DNA molecular structure and enzymatic processing.
Biochimie 2013;95(2):134-47.
2012: Roger J Heinze; Elena Kubareva; Tatiana S Oretskaya; Svetlana Sekerina; Ines Winkler; Christian Biertümpfel; Peter Friedhoff
Covalently trapping MutS on DNA to study DNA mismatch recognition and signaling.
Molecular bioSystems 2012;8(7):1861-4.
2011: Le Thi Hien; Elena A Kubareva; Alfred Pingoud; Benno Schierling; Eugene M Volkov; Wolfgang Wende; Timofei S Zatsepin; Tatiana S Oretskaya
Restriction endonuclease SsoII with photoregulated activity--a "molecular gate" approach.
Bioconjugate chemistry 2011;22(7):1366-73.
2011: Alexandra Yurievna Ryazanova; Mikhail Borisovich Viryasov; Ines Winkler; Peter Friedhoff; Tatiana S Oretskaya; Elena Kubareva
Crosslinking of (cytosine-5)-DNA methyltransferase SsoII and its complexes with specific DNA duplexes provides an insight into their structures.
Nucleosides, nucleotides & nucleic acids 2011;30(7-8):632-50.
2011: Elena A Khomyakova; Galina E Pozmogova; Igor P Smirnov; Dmitry A Stetsenko; Eugeny M Zubin; Tatiana S Oretskaya
DNA or RNA oligonucleotide 2'-hydrazides for chemoselective click-type ligation with carbonyl compounds.
Nucleosides, nucleotides & nucleic acids 2011;30(7-8):577-84.
2011: A Yu Ryazanova; Elena Kubareva; I Grman; Natalia V Lavrova; E M Ryazanova; Tatiana S Oretskaya; Tibor Hianik
The study of the interaction of (cytosine-5)-DNA methyltransferase SsoII with DNA by acoustic method.
The Analyst 2011;136(6):1227-33.
2010: Ekaterina A Belousova; Giovanni Maga; Yang Fan; Elena A Kubareva; Elena A Romanova; Natalia A Lebedeva; Tatiana S Oretskaya; Olga I Lavrik
DNA polymerases beta and lambda bypass thymine glycol in gapped DNA structures.
Biochemistry 2010;49(22):4695-704.
2010: Tibor Hianik; X Wang; V Tashlitsky; Tatiana S Oretskaya; S Ponikova; Marián Antalík; J S Ellis; M Thompson
Interaction of cationic surfactants with DNA detected by spectroscopic and acoustic wave techniques.
The Analyst 2010;135(5):980-6.
2009: Thi Hien Le; Tatiana S Oretskaya; Timofei S Zatsepin
Metal ion CHElate-aSSisted LIGAtion (CHESS LIGA) for SNP detection on microarrays.
Bioorganic & medicinal chemistry letters 2009;19(15):4018-21.
2009: E A Fedotova; A S Protsenko; M V Zakharova; Natalia V Lavrova; A V Alekseevsky; Tatiana S Oretskaya; Anna Karyagina; A S Solonin; Elena Kubareva
SsoII-like DNA-methyltransferase Ecl18kI: interaction between regulatory and methylating functions.
Biochemistry. Biokhimii͡a 2009;74(1):85-91.
2007: Timofei S Zatsepin; Tatiana S Oretskaya; Michael J Gait; Dmitry A Stetsenko
Preparation of 2'-hydrazino oligonucleotides and their reaction with aldehydes and 1,3-diketones.
Nucleosides, nucleotides & nucleic acids 2007;26(6-7):795-8.
2007: Eugenia V Kazanova; Eugeny M Zubin; Anna V Kachalova; Eugeny M Volkov; Tatiana S Oretskaya; Dmitry A Stetsenko; Marina Gottikh
A convenient solid-phase method for the synthesis of novel oligonucleotide-folate conjugates.
Nucleosides, nucleotides & nucleic acids 2007;26(10-12):1273-6.
2006: Drahoslav Humeník; Dusan Chorvát; Ivan Novotný; Vladimír Tvarozek; Tatiana S Oretskaya; Tibor Hianik
AFM images of short oligonucleotides on a surface of supported lipid films.
Medical engineering & physics 2006;28(10):956-62.
2006: Valeri Metelev; Andrey S Romanenkov; Elena Kubareva; Eugeny M Zubin; Nikolai Polouchine; Timofei S Zatsepin; Nikolai Molochkov; Tatiana S Oretskaya
Structure-based cross-linking of NF-kappaB p50 homodimer and decoy bearing a novel 2'-disulfide trapping site.
IUBMB life 2006;58(11):654-8.
2006: Tibor Hianik; X Wang; S Yu Andreev; Nina Dolinnaya; Tatiana S Oretskaya; M Thompson
DNA-duplexes containing abasic sites: correlation between thermostability and acoustic wave properties.
The Analyst 2006;131(10):1161-6.
2006: Ana-Maria Chiorcea Paquim; Tatiana S Oretskaya; Ana Maria Oliveira-Brett
Adsorption of synthetic homo- and hetero-oligodeoxynucleotides onto highly oriented pyrolytic graphite: atomic force microscopy characterization.
Biophysical chemistry 2006;121(2):131-41.
2005: Andrey S Romanenkov; A A Ustyugov; Timofei S Zatsepin; A A Nikulova; I V Kolesnikov; Valeri Metelev; Tatiana S Oretskaya; Elena Kubareva
Analysis of DNA-protein interactions in complexes of transcription factor NF-kappaB with DNA.
Biochemistry. Biokhimii͡a 2005;70(11):1212-22.
2005: Veronika Ostatná; Nina Dolinnaya; S Yu Andreev; Tatiana S Oretskaya; Joesph Wang; Tibor Hianik
The detection of DNA deamination by electrocatalysis at DNA-modified electrodes.
Bioelectrochemistry (Amsterdam, Netherlands) 2005;67(2):205-10.
2005: Ana Maria Oliveira-Brett; Ana-Maria Chiorcea Paquim; Victor C Diculescu; Tatiana S Oretskaya
Synthetic oligonucleotides: AFM characterisation and electroanalytical studies.
Bioelectrochemistry (Amsterdam, Netherlands) 2005;67(2):181-90.
2005: Eugeny M Zubin; Dmitry A Stetsenko; Timofei S Zatsepin; Michael J Gait; Tatiana S Oretskaya
Oligonucleotides containing 2'-O-[2-(2,3-dihydroxypropyl)amino-2-oxoethyl]uridine as suitable precursors of 2'-aldehyde oligonucleotides for chemoselective ligation.
Bioorganic & medicinal chemistry 2005;13(16):4912-20.
2005: A E Sud'ina; Timofei S Zatsepin; Vera Pingoud; Alfred Pingoud; Tatiana S Oretskaya; Elena Kubareva
Affinity modification of the restriction endonuclease SsoII by 2'-aldehyde-containing double stranded DNAs.
Biochemistry. Biokhimii͡a 2005;70(8):941-7.
2005: Timofei S Zatsepin; Dmitry A Stetsenko; Michael J Gait; Tatiana S Oretskaya
Use of carbonyl group addition--elimination reactions for synthesis of nucleic acid conjugates.
Bioconjugate chemistry 2005;16(3):471-89.
2005: Eugeny M Zubin; Dmitry A Stetsenko; Anna V Kachalova; Michael J Gait; Tatiana S Oretskaya
Incorporation of side-chain groups of basic amino acids into oligonucleotides via the 2'-position of uridine.
Nucleic acids symposium series (2004) 2005;(49):347-8.
2005: Timofei S Zatsepin; Dmitry A Stetsenko; Michael J Gait; Tatiana S Oretskaya
2'-Hydrazine oligonucleotides: synthesis and efficient conjugation with aldehydes.
Nucleic acids symposium series (2004) 2005;(49):133-4.
2005: Timofei S Zatsepin; J J Turner; Tatiana S Oretskaya; M J Gait
Conjugates of oligonucleotides and analogues with cell penetrating peptides as gene silencing agents.
Current pharmaceutical design 2005;11(28):3639-54.
2004: J A P Piedade; Miguel Mano; Maria C Pedroso de Lima; Tatiana S Oretskaya; Ana Maria Oliveira-Brett
Electrochemical sensing of the behaviour of oligonucleotide lipoplexes at charged interfaces.
Biosensors & bioelectronics 2004;20(5):975-84.
2004: Ana-Maria Chiorcea Paquim; Victor C Diculescu; Tatiana S Oretskaya; Ana Maria Oliveira-Brett
AFM and electroanalytical studies of synthetic oligonucleotide hybridization.
Biosensors & bioelectronics 2004;20(5):933-44.
2004: Anna Kachalova; Eugeny M Zubin; Dmitry Stetsenko; Michael J Gait; Tatiana S Oretskaya
Oligonucleotides with 2'-O-carboxymethyl group: synthesis and 2'-conjugation via amide bond formation on solid phase.
Organic & biomolecular chemistry 2004;2(19):2793-7.
2004: Timofei S Zatsepin; Yulia M Ivanova; Tatiana S Oretskaya
Synthesis of (2'S)- and (2'R)-2'-deoxy-2'-[(2-methoxyethoxy)amino] pyrimidine nucleosides and oligonucleotides.
Chemistry & biodiversity 2004;1(10):1537-45.
2004: Timofei S Zatsepin; Tatiana S Oretskaya
Synthesis and applications of oligonucleotide-carbohydrate conjugates.
Chemistry & biodiversity 2004;1(10):1401-17.
2004: Tibor Hianik; Peter Rybar; S Yu Andreev; Tatiana S Oretskaya; Pankaj Vadgama
Detection of DNA hybridization on a liposome surface using ultrasound velocimetry and turbidimetry methods.
Bioorganic & medicinal chemistry letters 2004;14(15):3897-900.
2004: Timofei S Zatsepin; Michael J Gait; Tatiana S Oretskaya
2'-Functionalized nucleic acids as structural tools in molecular biology.
IUBMB life 2004;56(4):209-14.
2004: Anna Sudina; Eugeny M Volkov; Tatiana S Oretskaya; Nikolai Naryshkin; Marina Ivanovskaya; Elena Kubareva
Detection of glycosylase, endonuclease and methyltransferase enzyme activities using immobilized oligonucleotides.
IUBMB life 2004;56(3):139-43.
2004: Anna V Kachalova; Dmitry A Stetsenko; Michael J Gait; Tatiana S Oretskaya
Synthesis of oligonucleotide 2'-conjugates via amide bond formation in solution.
Bioorganic & medicinal chemistry letters 2004;14(3):801-4.
2003: Denis Lesage; Valeri Metelev; Oksana Borisova; Nina Dolinnaya; Tatiana S Oretskaya; Fanny Baran-Marszak; Eliane Taillandier; Martine Raphael; Remi Fagard
Specific covalent binding of a NF-kappaB decoy hairpin oligonucleotide targeted to the p50 subunit and induction of apoptosis.
FEBS letters 2003;547(1-3):115-8.
2003: S I Antsypovitch; S Yu Andreev; Tatiana S Oretskaya
Convenient solid-phase method of introduction of sulfhydryl groups into oligodeoxyribonucleotides via 2'-O-carbamate linkage.
Nucleosides, nucleotides & nucleic acids 2003;22(5-8):1435-7.
2003: Timofei S Zatsepin; Elena A Romanova; Dmitry A Stetsenko; Michael J Gait; Tatiana S Oretskaya
Synthesis of 2'-modified oligonucleotides containing aldehyde or ethylenediamine groups.
Nucleosides, nucleotides & nucleic acids 2003;22(5-8):1383-5.
2003: Eugeny M Zubin; Dmitry A Stetsenko; Tatiana S Oretskaya; Michael J Gait
1,2-Diol and hydrazide phosphoramidites for solid-phase synthesis and chemoselective ligation of 2'-modified oligonucleotides.
Nucleosides, nucleotides & nucleic acids 2003;22(5-8):1375-8.
2003: Svetlana Kuznetsova; Anna Rykhlevskaya; Maria Taranenko; Olga Sidorkina; Tatiana S Oretskaya; Jacques Laval
Use of crosslinking for revealing the DNA phosphate groups forming specific contacts with the E. coli Fpg protein.
Biochimie 2003;85(5):511-9.
2003: Tibor Hianik; Pavol Vitovic; D Humenik; S Yu Andreev; Tatiana S Oretskaya; E A H Hall; Pankaj Vadgama
Hybridization of DNA at the surface of phospholipid monolayers. Effect of orientation of oligonucleotide chains.
Bioelectrochemistry (Amsterdam, Netherlands) 2003;59(1-2):35-40.
2003: Valeri Metelev; Elena Kubareva; Olga V Vorob'eva; Andrey S Romanenkov; Tatiana S Oretskaya
Specific conjugation of DNA binding proteins to DNA templates through thiol-disulfide exchange.
FEBS letters 2003;538(1-3):48-52.
2002: Timofei S Zatsepin; Dmitry A Stetsenko; Andrey A Arzumanov; Elena A Romanova; Michael J Gait; Tatiana S Oretskaya
Synthesis of peptide-oligonucleotide conjugates with single and multiple peptides attached to 2'-aldehydes through thiazolidine, oxime, and hydrazine linkages.
Bioconjugate chemistry 2002;13(4):822-30.
2002: Tatiana S Oretskaya; Elena A Romanova; S Yu Andreev; SI Antsypovich; C Tóth; V Gajdos; Tibor Hianik
A novel method of introducing hydrophobic moieties into oligonucleotides for covalent and non-covalent immobilization on electrode surfaces.
Bioelectrochemistry (Amsterdam, Netherlands) 2002;56(1-2):47-51.
2001: Valeri Metelev; O A Borisova; Eugeny M Volkov; Tatiana S Oretskaya; Nina Dolinnaya
New chemically reactive dsDNAs containing single internucleotide monophosphoryldithio links: reactivity of 5'-mercapto-oligodeoxyribonucleotides.
Nucleic acids research 2001;29(19):4062-9.
2001: Tibor Hianik; V Gajdos; Roland Krivanek; Tatiana S Oretskaya; Valeri Metelev; Eugeny M Volkov; Pankaj Vadgama
Amperometric detection of DNA hybridization on a gold surface depends on the orientation of oligonucleotide chains.
Bioelectrochemistry (Amsterdam, Netherlands) 2001;53(2):199-204.
2000: Anna V Kachalova; Timofei S Zatsepin; Elena A Romanova; Dmitry A Stetsenko; Michael J Gait; Tatiana S Oretskaya
Synthesis of modified nucleotide building blocks containing electrophilic groups in the 2'-position.
Nucleosides, nucleotides & nucleic acids 2000;19(10-12):1693-707.
2000: E A Rudakova; Marina Ivanovskaya; M V Kozlov; M V Khoretonenko; Tatiana S Oretskaya; V G Nikiforov
Probing contacts of phosphate groups of oligonucleotides from the non-template strand of lac UV5 promoter with E. coli RNA polymerase using regioselective cross-linking.
Biochemistry. Biokhimii͡a 2000;65(6):640-50.
2000: Elena Kubareva; Hubert Thole; Anna Karyagina; Tatiana S Oretskaya; Alfred Pingoud; Vera Pingoud
Identification of a base-specific contact between the restriction endonuclease SsoII and its recognition sequence by photocross-linking.
Nucleic acids research 2000;28(5):1085-91.
1999: Eugeny M Zubin; Elena A Romanova; Eugeny M Volkov; V N Tashlitsky; Galina A Korshunova; ZA Shabarova; Tatiana S Oretskaya
Oligonucleotide-peptide conjugates as potential antisense agents.
FEBS letters 1999;456(1):59-62.
1999: Marina Gottikh; Eugeny M Volkov; Elena A Romanova; Tatiana S Oretskaya; ZA Shabarova
Synthesis of oligonucleotide-intercalator conjugates capable to inhibit HIV-1 DNA integration.
Nucleosides & nucleotides 1999;18(6-7):1645-6.
1999: Nina Dolinnaya; Valeri Metelev; Tatiana S Oretskaya; D Tabatadze; Z Shabarova
Hairpin-shaped DNA duplexes with disulfide bonds in sugar-phosphate backbone as potential DNA reagents for crosslinking with proteins.
FEBS letters 1999;444(2-3):285-90.
1998: Elena Kubareva; Nataliya L Vasilenko; O V Vorobjeva; Eugeny M Volkov; Tatiana S Oretskaya; Galina A Korshunova; Georgy A Nevinsky
Role of DNA definite structural elements in interaction with repair enzyme uracil-DNA glycosylase.
Biochemistry and molecular biology international 1998;46(3):597-606.
1998: S Antsypovich; Elena Kubareva; V Tashlitsky; Tatiana S Oretskaya; Z Shabarova
Cross-linked DNA duplexes--exonuclease stability and interaction with the nucleic transcription factor of the kappa light-chain enhancer (NF-kappaB).
European journal of biochemistry / FEBS 1998;255(2):414-21.
1997: Eugeny M Zubin; SI Antsypovich; Tatiana S Oretskaya; Elena A Romanova; Eugeny M Volkov; V N Tashlitskiĭ; ZA Shabarova
[Synthesis of modified oligodeoxyribonucleotides containing 9-(2'-amino-2'-deoxy-beta-D-arabinofuranosyl)adenine].
Bioorganicheskaia khimiia 1997;23(10):809-16.
1997: Pavel Baranov; SS Dokudovskaya; Tatiana S Oretskaya; Olga A Dontsova; Alexey A Bogdanov; Richard Brimacombe
A new technique for the characterization of long-range tertiary contacts in large RNA molecules: insertion of a photolabel at a selected position in 16S rRNA within the Escherichia coli ribosome.
Nucleic acids research 1997;25(12):2266-73.
1997: Nikolai Naryshkin; M A Farrow; Marina Ivanovskaya; Tatiana S Oretskaya; ZA Shabarova; Michael J Gait
Chemical cross-linking of the human immunodeficiency virus type 1 Tat protein to synthetic models of the RNA recognition sequence TAR containing site-specific trisubstituted pyrophosphate analogues.
Biochemistry 1997;36(12):3496-505.
1996: S I Antsypovich; Tatiana S Oretskaya; Elena A Romanova; Eugeny M Volkov; V N Tashlitsky; M Vasser; ZA Shabarova
Synthesis and properties of cross-linked DNA duplexes.
FEBS letters 1996;378(3):224-6.
1995: Elizaveta S Gromova; Tatiana S Oretskaya; Ramon Eritja; W Guschlbauer
Kinetic studies of MvaI DNA methyltransferase interaction with modified oligonucleotide duplexes.
Biochemistry and molecular biology international 1995;36(2):247-55.
1995: Elena Kubareva; Eugeny M Volkov; Tatiana S Oretskaya; Elizaveta S Gromova; ZA Shabarova
Chemical cross-linking of MvaI and EcoRII enzymes to DNA duplexes containing monosubstituted pyrophosphate internucleotide bond.
Gene 1995;157(1-2):187-90.
1995: OV Petrauskene; Elizaveta S Gromova; Elena A Romanova; Eugeny M Volkov; Tatiana S Oretskaya; ZA Shabarova
DNA duplexes containing methylated bases or non-nucleotide inserts in the recognition site are cleaved by restriction endonuclease R.EcoRII in presence of canonical substrate.
Gene 1995;157(1-2):173-6.
1995: Elena Kubareva; Eugeny M Volkov; N L Vinogradova; I A Kanevsky; Tatiana S Oretskaya; S A Kuznetsova; M G Brevnov; Elizaveta S Gromova; G A Nevinsky; ZA Shabarova
Modified substrates as probes for studying uracil-DNA glycosylase.
Gene 1995;157(1-2):167-71.
1993: N G Dolinnaya; M Blumenfeld; I N Merenkova; Tatiana S Oretskaya; N F Krynetskaya; Marina Ivanovskaya; M Vasseur; ZA Shabarova
Oligonucleotide circularization by template-directed chemical ligation.
Nucleic acids research 1993;21(23):5403-7.
1993: M W Wyszynski; S Gabbara; Elena Kubareva; Elena A Romanova; Tatiana S Oretskaya; Elizaveta S Gromova; ZA Shabarova; Ashok S Bhagwat
The cysteine conserved among DNA cytosine methylases is required for methyl transfer, but not for specific DNA binding.
Nucleic acids research 1993;21(2):295-301.
1992: S Schmidt; A Niemann; N F Krynetskaya; Tatiana S Oretskaya; V G Metelev; V V Suchomlinov; ZA Shabarova; D Cech
The use of oligonucleotide probes containing 2'-deoxy-2'-fluoronucleosides for regiospecific cleavage of RNA by RNase H from Escherichia coli.
Biochimica et biophysica acta 1992;1130(1):41-6.
1991: ZA Shabarova; I N Merenkova; Tatiana S Oretskaya; N I Sokolova; E A Skripkin; E V Alexeyeva; A G Balakin; Alexey A Bogdanov
Chemical ligation of DNA: the first non-enzymatic assembly of a biologically active gene.
Nucleic acids research 1991;19(15):4247-51.
1991: Elizaveta S Gromova; Elena Kubareva; M N Vinogradova; Tatiana S Oretskaya; ZA Shabarova
Peculiarities of recognition of CCA/TGG sequences in DNA by restriction endonucleases MvaI and EcoRII.
Journal of molecular recognition : JMR 1991;4(4):133-41.
1991: N G Dolinnaya; A V Tsytovich; V N Sergeev; Tatiana S Oretskaya; ZA Shabarova
Structural and kinetic aspects of chemical reactions in DNA duplexes. Information on DNA local structure obtained from chemical ligation data.
Nucleic acids research 1991;19(11):3073-80.
1991: Elena Kubareva; Elizaveta S Gromova; C D Pein; A Krug; Tatiana S Oretskaya; D Cech; ZA Shabarova
Oligonucleotide cleavage by restriction endonucleases MvaI and EcoRII: a comprehensive study on the influence of structural parameters on the enzyme-substrate interaction.
Biochimica et biophysica acta 1991;1088(3):395-400.
1991: Elena A Romanova; Eugeny M Volkov; L G Kuznetsova; Tatiana S Oretskaya; ZA Shabarova
Incorporation of point modifications into oligonucleotides during automatic synthesis.
Nucleic acids symposium series 1991;(24):232.
1988: V G Metelev; G V Zayakina; I L Ryabushenko; N F Krynetskaya; Elena A Romanova; Tatiana S Oretskaya; ZA Shabarova
Influence of probe structure on unique (regiospecific) cleavage of RNA by RNase H.
FEBS letters 1988;226(2):232-4.
1984: A A Yolov; Elizaveta S Gromova; Elena A Romanova; Tatiana S Oretskaya; A A Oganov; ZA Shabarova
Interaction of EcoRII restriction and modification enzymes with synthetic DNA fragments. EcoRII endonuclease cleavage of substrates with repeated natural and modified recognition sites.
FEBS letters 1984;167(1):147-50.