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Miguel Ortega

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Gene Expression

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TOP 3
Elisa Donnard; Gabriel Fernandes; Rafael L M Guedes; Matthew J Kohn; Miguel Andrade; Adriano Barbosa-Silva; Henrique Velloso; J Miguel Ortega
Preimplantation development regulatory pathway construction through a text-mining approach.
Gabriel Fernandes; M A Mudado; J Miguel Ortega
Testing the performance of automated annotation of ESTs with the Kegg Orthology (KO) database demonstrates lack of completeness of clusters.
S A P Pinto; J Miguel Ortega
An algorithm to infer similarity among cell types and organisms by examining the most expressed sequences.

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All Publications

2011: Elisa Donnard; Gabriel Fernandes; Rafael L M Guedes; Matthew J Kohn; Miguel Andrade; Adriano Barbosa-Silva; Henrique Velloso; J Miguel Ortega
Preimplantation development regulatory pathway construction through a text-mining approach.
BMC genomics 2011;12 Suppl 4():S3.
2008: Gabriel Fernandes; M A Mudado; J Miguel Ortega
Testing the performance of automated annotation of ESTs with the Kegg Orthology (KO) database demonstrates lack of completeness of clusters.
Genetics and molecular research : GMR 2008;7(3):948-57.
2008: S A P Pinto; J Miguel Ortega
An algorithm to infer similarity among cell types and organisms by examining the most expressed sequences.
Genetics and molecular research : GMR 2008;7(3):933-47.
2008: Gabriel Fernandes; D V C Barbosa; Francisco Prosdocimi; I A Pena; L Santana-Santos; O Coelho Junior; A Barbosa-Silva; H M Velloso; M A Mudado; D A Natale; Alessandra C Faria-Campos; S C V Aguiar; J Miguel Ortega
A procedure to recruit members to enlarge protein family databases--the building of UECOG (UniRef-Enriched COG Database) as a model.
Genetics and molecular research : GMR 2008;7(3):910-24.
2008: L Santana-Santos; Francisco Prosdocimi; J Miguel Ortega
Essential amino acid usage and evolutionary nutrigenomics of eukaryotes--insights into the differential usage of amino acids in protein domains and extra-domains.
Genetics and molecular research : GMR 2008;7(3):839-52.
2007: Francisco Prosdocimi; Maurício A Mudado; J Miguel Ortega
A set of amino acids found to occur more frequently in human and fly than in plant and yeast proteomes consists of non-essential amino acids.
Computers in biology and medicine 2007;37(2):159-65.
2007: A Barbosa-Silva; E Pafilis; J Miguel Ortega; Reinhard Schneider
Development of SRS.php, a Simple Object Access Protocol-based library for data acquisition from integrated biological databases.
Genetics and molecular research : GMR 2007;6(4):1142-50.
2007: Francisco Prosdocimi; D A O Lopes; Fabiano Cruz Peixoto; Marina Mourao; L G G Pacífico; R A Ribeiro; J Miguel Ortega
Effects of sample re-sequencing and trimming on the quality and size of assembled consensus sequences.
Genetics and molecular research : GMR 2007;6(4):756-65.
2007: Vanessa F Gonçalves; Francisco Prosdocimi; Leonardo S Santos; J Miguel Ortega; Sergio Pena
Sex-biased gene flow in African Americans but not in American Caucasians.
Genetics and molecular research : GMR 2007;6(2):256-61.
2006: Alessandra C Faria-Campos; Fernanda S Moratelli; Isabella K Mendes; Paula L Ortolani; Guilherme Oliveira; Sérgio V A Campos; J Miguel Ortega; Glória Regina Franco
Production of full-length cDNA sequences by sequencing and analysis of expressed sequence tags from Schistosoma mansoni.
Memórias do Instituto Oswaldo Cruz 2006;101 Suppl 1():161-5.
2006: Alessandra C Faria-Campos; Sergio V A Campos; Francisco Prosdocimi; Glaura C Franco; Glória Regina Franco; J Miguel Ortega
Efficient secondary database driven annotation using model organism sequences.
In silico biology 2006;6(5):363-72.
2006: Maurício de Alvarenga Mudado; J Miguel Ortega
A picture of gene sampling/expression in model organisms using ESTs and KOG proteins.
Genetics and molecular research : GMR 2006;5(1):242-53.
2005: Francisco Prosdocimi; J Miguel Ortega
Accessing optimal primer distance from insert.
In silico biology 2005;5(5-6):469-77.
2004: Francisco Prosdocimi; Fabiano Cruz Peixoto; J Miguel Ortega
Evaluation of window cohabitation of DNA sequencing errors and lowest PHRED quality values.
Genetics and molecular research : GMR 2004;3(4):483-92.
2003: M Thompson; V A Andrade; S J Andrade; Thomas Pusl; J Miguel Ortega; Alfredo M Goes; M Fatima Leite
Inhibition of the TEF/TEAD transcription factor activity by nuclear calcium and distinct kinase pathways.
Biochemical and biophysical research communications 2003;301(2):267-74.
2003: Alessandra C Faria-Campos; Gustavo Cerqueira; Charles Anacleto; Cláudia Márcia Benedetto de Carvalho; J Miguel Ortega
Mining microorganism EST databases in the quest for new proteins.
Genetics and molecular research : GMR 2003;2(1):169-77.
2003: Ana Lúcia Pimenta Starling; J Miguel Ortega; Kenneth Gollob; Elisabete J Vicente; Gisele M Andrade-Nóbrega; Mônica B Rodriguez
Evaluation of alternative reporter genes for the yeast two-hybrid system.
Genetics and molecular research : GMR 2003;2(1):124-35.
2002: M Fatima Leite; Keiji Hirata; Thomas Pusl; Angela D Burgstahler; Keisuke Okazaki; J Miguel Ortega; Alfredo M Goes; Marco Prado; david spray; Michael H Nathanson
Molecular basis for pacemaker cells in epithelia.
The Journal of biological chemistry 2002;277(18):16313-23.
2002: Francisco Prosdocimi; Alessandra C Faria-Campos; Fabiano Cruz Peixoto; Sergio Pena; J Miguel Ortega; Glória Regina Franco
Clustering of Schistosoma mansoni mRNA sequences and analysis of the most transcribed genes: implications in metabolism and biology of different developmental stages.
Memórias do Instituto Oswaldo Cruz 2002;97 Suppl 1():61-9.
1999: Tulio Santos; D A Johnston; Vasco Azevedo; I L Ridgers; M F Martinez; G B Marotta; R L Santos; S J Fonseca; J Miguel Ortega; Elida M L Rabelo; M Saber; H M Ahmed; M H Romeih; Glória Regina Franco; D Rollinson; Sergio Pena
Analysis of the gene expression profile of Schistosoma mansoni cercariae using the expressed sequence tag approach.
Molecular and biochemical parasitology 1999;103(1):79-97.
1998: J Miguel Ortega; M L DePamphilis
Nucleoskeleton and initiation of DNA replication in metazoan cells.
Journal of cell science 1998;111 ( Pt 24)():3663-73.
1997: Elida M L Rabelo; Glória Regina Franco; Vasco Azevedo; Heloísa B Pena; Tulio Santos; Wendell Meira; N A Rodrigues; J Miguel Ortega; Sergio Pena
Update of the gene discovery program in Schistosoma mansoni with the expressed sequence tag approach.
Memórias do Instituto Oswaldo Cruz 1997;92(5):625-9.
1997: Glória Regina Franco; Elida M L Rabelo; Vasco Azevedo; Heloísa B Pena; J Miguel Ortega; Tulio Santos; Wendell Meira; N A Rodrigues; C M Dias; R Harrop; A Wilson; M Saber; H Abdel-Hamid; M S Faria; M E Margutti; J C Parra; Sergio Pena
Evaluation of cDNA libraries from different developmental stages of Schistosoma mansoni for production of expressed sequence tags (ESTs).
DNA research : an international journal for rapid publication of reports on genes and genomes 1997;4(3):231-40.
1993: David M Gilbert; H Miyazawa; Ferez Nallaseth; J Miguel Ortega; J J Blow; M L DePamphilis
Site-specific initiation of DNA replication in metazoan chromosomes and the role of nuclear organization.
Cold Spring Harbor symposia on quantitative biology 1993;58():475-85.