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Kazutoyo Osoegawa

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Bacterial Artificial Chromosomes

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Oleg Simakov; Astrid Y Terry; David A Weisblat; Robert Savage; Elaine C Seaver; Harris Shapiro; Andrea Aerts; Detlev Arendt; Jeffrey L Boore; Jarrod A Chapman; Sung-Jin Cho; Pieter de Jong; Eric Edsinger-Gonzales; Igor V Grigoriev; Jane Grimwood; Paul Havlak; Uffe Hellsten; Dian-Han Kuo; Tomas Larsson; David R Lindberg; Jie Lv; Ferdinand Marletaz; Kazutoyo Osoegawa; Robert P Otillar; Nicholas Putnam; Dan S Rokhsar
Insights into bilaterian evolution from three spiralian genomes.
Edward J Lammer; Jacqueline S Chak; David M Iovannisci; Kathleen Schultz; Kazutoyo Osoegawa; Wei Yang; Suzan L Carmichael; Gary M Shaw
Chromosomal abnormalities among children born with conotruncal cardiac defects.
M Katharine Rudd; Raelynn M Endicott; Cynthia Friedman; Megan Walker; Janet M Young; Kazutoyo Osoegawa; Pieter J de Jong; Eric Green; Barbara J Trask
Comparative sequence analysis of primate subtelomeres originating from a chromosome fission event.

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All Publications

2013: Oleg Simakov; Astrid Y Terry; David A Weisblat; Robert Savage; Elaine C Seaver; Harris Shapiro; Andrea Aerts; Detlev Arendt; Jeffrey L Boore; Jarrod A Chapman; Sung-Jin Cho; Pieter de Jong; Eric Edsinger-Gonzales; Igor V Grigoriev; Jane Grimwood; Paul Havlak; Uffe Hellsten; Dian-Han Kuo; Tomas Larsson; David R Lindberg; Jie Lv; Ferdinand Marletaz; Kazutoyo Osoegawa; Robert P Otillar; Nicholas Putnam; Dan S Rokhsar
Insights into bilaterian evolution from three spiralian genomes.
Nature 2013;493(7433):526-31.
2009: Edward J Lammer; Jacqueline S Chak; David M Iovannisci; Kathleen Schultz; Kazutoyo Osoegawa; Wei Yang; Suzan L Carmichael; Gary M Shaw
Chromosomal abnormalities among children born with conotruncal cardiac defects.
Birth defects research. Part A, Clinical and molecular teratology 2009;85(1):30-5.
2009: M Katharine Rudd; Raelynn M Endicott; Cynthia Friedman; Megan Walker; Janet M Young; Kazutoyo Osoegawa; Pieter J de Jong; Eric Green; Barbara J Trask
Comparative sequence analysis of primate subtelomeres originating from a chromosome fission event.
Genome research 2009;19(1):33-41.
2008: Amy C Horton; Navin R Mahadevan; Carolina Minguillon; Kazutoyo Osoegawa; Dan S Rokhsar; Ilya Ruvinsky; Pieter J de Jong; Malcolm P Logan; Jeremy J Gibson-Brown
Conservation of linkage and evolution of developmental function within the Tbx2/3/4/5 subfamily of T-box genes: implications for the origin of vertebrate limbs.
Development genes and evolution 2008;218(11-12):613-28.
2008: Kazutoyo Osoegawa; Gery M Vessere; K H Utami; M Adela Mansilla; M K Johnson; Bridget M Riley; J L'Heureux; Rolph Pfundt; Johan Staaf; Walter A Van Der Vliet; Andrew C Lidral; Eric F P M Schoenmakers; Ake Borg; Brian C Schutte; Edward J Lammer; Jeffrey C Murray; P J de Jong
Identification of novel candidate genes associated with cleft lip and palate using array comparative genomic hybridisation.
Journal of medical genetics 2008;45(2):81-6.
2008: Kimiko Yamamoto; Junko Nohata; Keiko Kadono-Okuda; Junko Narukawa; Motoe Sasanuma; Shun-Ichi Sasanuma; Hiroshi Minami; Michihiko Shimomura; Yoshitaka Suetsugu; Yutaka Banno; Kazutoyo Osoegawa; Pieter J de Jong; Marian R Goldsmith; Kazuei Mita
A BAC-based integrated linkage map of the silkworm Bombyx mori.
Genome biology 2008;9(1):R21.
2007: Robert Lyle; Paola Prandini; Kazutoyo Osoegawa; Boudewijn ten Hallers; Sean Humphray; Baoli Zhu; Eduardo Eyras; Robert Castelo; Christine P Bird; Sarantis Gagos; Carol Scott; Antony Cox; Samuel Deutsch; Catherine Ucla; Marc Cruts; Sophie Dahoun; Xinwei She; Frederique Bena; Sheng-Yue Wang; Christine Van Broeckhoven; Evan E Eichler; Roderic Guigo; Jane Rogers; Pieter J de Jong; Alexandre Reymond; Stylianos E Antonarakis
Islands of euchromatin-like sequence and expressed polymorphic sequences within the short arm of human chromosome 21.
Genome research 2007;17(11):1690-6.
2007: Göran Jönsson; Johan Staaf; Eleonor Olsson; Markus Heidenblad; Johan Vallon-Christersson; Kazutoyo Osoegawa; Pieter de Jong; Stina Oredsson; Markus Ringnér; Mattias Höglund; Ake Borg
High-resolution genomic profiles of breast cancer cell lines assessed by tiling BAC array comparative genomic hybridization.
Genes, chromosomes & cancer 2007;46(6):543-58.
2007: Kazutoyo Osoegawa; Gery M Vessere; Chung Li Shu; Roger A Hoskins; José P Abad; Beatriz De Pablos; Alfredo Villasante; Pieter J de Jong
BAC clones generated from sheared DNA.
Genomics 2007;89(2):291-9.
2006: Lucia Carbone; Gery M Vessere; Boudewijn F H ten Hallers; Baoli Zhu; Kazutoyo Osoegawa; Alan Mootnick; Andrea Kofler; Johannes Wienberg; Jane Rogers; Sean Humphray; Carol Scott; Ronald Harris; Aleksandar Milosavljevic; Pieter J de Jong
A high-resolution map of synteny disruptions in gibbon and human genomes.
PLoS genetics 2006;2(12):e223.
2005: Florian Raible; Kristin Tessmar-Raible; Kazutoyo Osoegawa; Patrick Wincker; Claire Jubin; Guillaume Balavoine; David E K Ferrier; Vladimir Benes; Pieter de Jong; Jean Weissenbach; Peer Bork; Detlev Arendt
Vertebrate-type intron-rich genes in the marine annelid Platynereis dumerilii.
Science (New York, N.Y.) 2005;310(5752):1325-6.
2005: Siemon H S Ng; Carlo G Artieri; Ian Bosdet; Readman Chiu; Roy G Danzmann; William S Davidson; Moira M Ferguson; Christopher D Fjell; Bjorn Hoyheim; Steven J M Jones; Pieter J de Jong; Ben F Koop; Martin I Krzywinski; Krzysztof Lubieniecki; Marco A Marra; Leslie A Mitchell; Carrie Mathewson; Kazutoyo Osoegawa; Sarah E Parisotto; Ruth B Phillips; Matthew L Rise; Kristian R Von Schalburg; Jacqueline E Schein; Heesun Shin; Asim Siddiqui; Jim Thorsen; Natasja Wye; George Yang; Baoli Zhu
A physical map of the genome of Atlantic salmon, Salmo salar.
Genomics 2005;86(4):396-404.
2005: Ze Cheng; ventura Mario; Xinwei She; Philipp Khaitovich; Tina Graves; Kazutoyo Osoegawa; Deanna Church; Pieter DeJong; Richard K Wilson; Svante Pääbo; Mariano Rocchi; Evan E Eichler
A genome-wide comparison of recent chimpanzee and human segmental duplications.
Nature 2005;437(7055):88-93.
2005: T Kaname; A McGuigan; A Georghiou; Y Yurov; Kazutoyo Osoegawa; P J De Jong; P Ioannou; Clare Huxley
Alphoid DNA from different chromosomes forms de novo minichromosomes with high efficiency.
Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology 2005;13(4):411-22.
2005: Jim Thorsen; Baoli Zhu; Eirik Frengen; Kazutoyo Osoegawa; Pieter J de Jong; Ben F Koop; William S Davidson; Bjørn Høyheim
A highly redundant BAC library of Atlantic salmon (Salmo salar): an important tool for salmon projects.
BMC genomics 2005;6():50.
2004: Renato Robledo; Patrick Bender; Jay Leonard; Baoli Zhu; Kazutoyo Osoegawa; Pieter de Jong; Xi Xu; Ziyun Yao; Bruce Roe
The immunoglobulin lambda variable light-chain region in primates has been shaped by multiple, independent, small-scale and large-scale insertion/deletion events.
Genomics 2004;84(4):678-85.
2004: Shaying Zhao; Jyoti U Shetty; Lihua Hou; Arthur Delcher; Baoli Zhu; Kazutoyo Osoegawa; Pieter de Jong; William C Nierman; Robert L Strausberg; Claire M Fraser-Liggett
Human, mouse, and rat genome large-scale rearrangements: stability versus speciation.
Genome research 2004;14(10A):1851-60.
2004: José P Abad; Beatriz De Pablos; Kazutoyo Osoegawa; Pieter J de Jong; Antonia Martín-Gallardo; Alfredo Villasante
TAHRE, a novel telomeric retrotransposon from Drosophila melanogaster, reveals the origin of Drosophila telomeres.
Molecular biology and evolution 2004;21(9):1620-4.
2004: José P Abad; Beatriz De Pablos; Kazutoyo Osoegawa; Pieter J de Jong; Antonia Martín-Gallardo; Alfredo Villasante
Genomic analysis of Drosophila melanogaster telomeres: full-length copies of HeT-A and TART elements at telomeres.
Molecular biology and evolution 2004;21(9):1613-9.
2004: Joris Veltman; Helger G Yntema; Dorien Lugtenberg; H Arts; Sylvain Briault; Erik H L P G Huys; Kazutoyo Osoegawa; Pieter de Jong; Han G Brunner; Ad Geurts van Kessel; Hans van Bokhoven; Eric F P M Schoenmakers
High resolution profiling of X chromosomal aberrations by array comparative genomic hybridisation.
Journal of medical genetics 2004;41(6):425-32.
2004: Charles Stewart; Roger HORTON; Richard J N Allcock; Jennifer L Ashurst; Alexey Atrazhev; Penny Coggill; Carl Bruder; Simon Forbes; Karen Halls; Joanna M M Howson; Sean Humphray; Sarah Hunt; Andrew Mungall; Kazutoyo Osoegawa; Sophie Palmer; Anne N Roberts; Jane Rogers; Sarah Sims; Yu Wang; Laurens G Wilming; John Elliott; Pieter J de Jong; Stephen Sawcer; John A Todd; John Trowsdale; Stephan Beck
Complete MHC haplotype sequencing for common disease gene mapping.
Genome research 2004;14(6):1176-87.
2004: Kazutoyo Osoegawa; Baoli Zhu; Chung Li Shu; Teresa Ren; Qing Cao; Gery M Vessere; Michelle M Lutz; Michael I Jensen-Seaman; Shaying Zhao; Pieter J de Jong
BAC resources for the rat genome project.
Genome research 2004;14(4):780-5.
2004: Kelly A Frazer; Heng Tao; Kazutoyo Osoegawa; Pieter J de Jong; Xiyin Chen; Mark F Doherty; David R Cox
Noncoding sequences conserved in a limited number of mammals in the SIM2 interval are frequently functional.
Genome research 2004;14(3):367-72.
2004: Martin I Krzywinski; Ian Bosdet; Duane E Smailus; Readman Chiu; Carrie Mathewson; Natasja Wye; Sarah Barber; Mabel Brown-John; Susanna Chan; Steve Chand; Alison Cloutier; Noreen Girn; Darlene Lee; Amara Masson; Michael Mayo; Teika Olson; Pawan Pandoh; Anna-Liisa Prabhu; Eric F P M Schoenmakers; Miranda Tsai; Donna G Albertson; Wan Lam; Chik On Choy; Kazutoyo Osoegawa; Shaying Zhao; Pieter J de Jong; Jacqueline E Schein; Steven J M Jones; Marco A Marra
A set of BAC clones spanning the human genome.
Nucleic acids research 2004;32(12):3651-60.
2004: Kazutoyo Osoegawa; Pieter J de Jong
BAC library construction.
Methods in molecular biology (Clifton, N.J.) 2004;255():1-46.
2003: Jeremy J Gibson-Brown; Kazutoyo Osoegawa; John D McPherson; Robert H Waterston; Pieter J de Jong; Dan S Rokhsar; Linda Z Holland
A proposal to sequence the amphioxus genome submitted to the Joint Genome Institute of the US Department of Energy.
Journal of experimental zoology. Part B, Molecular and developmental evolution 2003;300(1):5-22.
2003: Lisenka E L M Vissers; Bert B A de Vries; Kazutoyo Osoegawa; Irene M Janssen; Ton Feuth; Chik On Choy; huub straatman; Walter A Van Der Vliet; Erik H L P G Huys; Anke van Rijk; Dominique Smeets; Conny van Ravenswaaij-Arts; Nine V A M Knoers; Ineke van der Burgt; Pieter J de Jong; Han G Brunner; Ad Geurts van Kessel; Eric F P M Schoenmakers; Joris Veltman
Array-based comparative genomic hybridization for the genomewide detection of submicroscopic chromosomal abnormalities.
American journal of human genetics 2003;73(6):1261-70.
2003: Christopher S Hackett; J Graeme Hodgson; Mark E Law; Jane Fridlyand; Kazutoyo Osoegawa; Pieter J de Jong; Norma J Nowak; Daniel Pinkel; Donna G Albertson; Ajay Jain; Robert Jenkins; Joe Gray; William A Weiss
Genome-wide array CGH analysis of murine neuroblastoma reveals distinct genomic aberrations which parallel those in human tumors.
Cancer research 2003;63(17):5266-73.
2003: Denis M Larkin; Annelie Everts-van der Wind; Mark Rebeiz; Peter A Schweitzer; Sharon Bachman; Cheryl Green; Chris L Wright; Edhilvia J Campos; Leslie D Benson; Jennifer Edwards; Lei Liu; Kazutoyo Osoegawa; James E Womack; Pieter J de Jong; Harris Lewin
A cattle-human comparative map built with cattle BAC-ends and human genome sequence.
Genome research 2003;13(8):1966-72.
2003: Stephen S Moore; Christiane Hansen; J L Williams; Anna Fu; Yan Meng; Changxi Li; Y Zhang; B S D Urquhart; Marco Marra; Jacqueline E Schein; Bernhard F Benkel; Pieter J de Jong; Kazutoyo Osoegawa; Brian Kirkpatrick; Clare Gill
A comparative map of bovine chromosome 19 based on a combination of mapping on a bacterial artificial chromosome scaffold map, a whole genome radiation hybrid panel and the human draft sequence.
Cytogenetic and genome research 2003;102(1-4):32-8.
2002: Richard J N Allcock; Alexey Atrazhev; Stephan Beck; Pieter J de Jong; John Elliott; Simon Forbes; Karen Halls; Roger HORTON; Kazutoyo Osoegawa; Jane Rogers; Stephen Sawcer; John A Todd; John Trowsdale; Y Wang; S Williams
The MHC haplotype project: a resource for HLA-linked association studies.
Tissue antigens 2002;59(6):520-1.
2002: Asao Fujiyama; Hidemi Watanabe; Atsushi Toyoda; Todd D Taylor; Takehiko Itoh; Shih-Feng Tsai; Hong-Seog Park; Marie-Laure Yaspo; Hans Lehrach; Zhu Chen; Gang Fu; Naruya Saitou; Kazutoyo Osoegawa; Pieter J de Jong; Yumiko Suto; Masahira Hattori; Yoshiyuki Sakaki
Construction and analysis of a human-chimpanzee comparative clone map.
Science (New York, N.Y.) 2002;295(5552):131-4.
2001: C Zeng; Natalay Kouprina; Baoli Zhu; A Cairo; M Hoek; G Cross; Kazutoyo Osoegawa; Vladimir Larionov; Pieter de Jong
Large-insert BAC/YAC libraries for selective re-isolation of genomic regions by homologous recombination in yeast.
Genomics 2001;77(1-2):27-34.
2001: Kazutoyo Osoegawa; P J de Jong; Eirik Frengen; P A Ioannou
Construction of bacterial artificial chromosome (BAC/PAC) libraries.
Current protocols in molecular biology / edited by Frederick M. Ausubel ... [et al.] 2001;Chapter 5():Unit 5.9.
2001: Dieter Weichenhan; B Kunze; Heinz Winking; Michel van Geel; Kazutoyo Osoegawa; Pieter J de Jong; Walther Traut
Source and component genes of a 6-200 Mb gene cluster in the house mouse.
Mammalian genome : official journal of the International Mammalian Genome Society 2001;12(8):590-4.
2001: Scott C Fahrenkrug; Gary A Rohrer; Brad A Freking; Timothy P L Smith; Kazutoyo Osoegawa; Chung Li Shu; JJ Catanese; Pieter J de Jong
A porcine BAC library with tenfold genome coverage: a resource for physical and genetic map integration.
Mammalian genome : official journal of the International Mammalian Genome Society 2001;12(6):472-4.
2001: Kazutoyo Osoegawa; AG Mammoser; C Wu; Eirik Frengen; C Zeng; JJ Catanese; Pieter J de Jong
A bacterial artificial chromosome library for sequencing the complete human genome.
Genome research 2001;11(3):483-96.
2000: Eirik Frengen; B Zhao; Steven Howe; Dieter Weichenhan; Kazutoyo Osoegawa; Elisabet Gjernes; J Jessee; Hans Prydz; Clare Huxley; Pieter J de Jong
Modular bacterial artificial chromosome vectors for transfer of large inserts into mammalian cells.
Genomics 2000;68(2):118-26.
2000: Roger A Hoskins; C R Nelson; Benjamin P Berman; Todd R Laverty; Reed A George; L Ciesiolka; M Naeemuddin; A D Arenson; J Durbin; R G David; P E Tabor; M R Bailey; D R DeShazo; JJ Catanese; AG Mammoser; Kazutoyo Osoegawa; Pieter J de Jong; Susan E Celniker; Richard A Gibbs; Gerald M Rubin; Steven E Scherer
A BAC-based physical map of the major autosomes of Drosophila melanogaster.
Science (New York, N.Y.) 2000;287(5461):2271-4.
2000: Kazutoyo Osoegawa; M Tateno; Peng Y Woon; Eirik Frengen; AG Mammoser; JJ Catanese; Y Hayashizaki; Pieter J de Jong
Bacterial artificial chromosome libraries for mouse sequencing and functional analysis.
Genome research 2000;10(1):116-28.
1999: Eirik Frengen; Dieter Weichenhan; B Zhao; Kazutoyo Osoegawa; Michel van Geel; Pieter J de Jong
A modular, positive selection bacterial artificial chromosome vector with multiple cloning sites.
Genomics 1999;58(3):250-3.
1998: Kazutoyo Osoegawa; Peng Y Woon; B Zhao; Eirik Frengen; M Tateno; JJ Catanese; Pieter J de Jong
An improved approach for construction of bacterial artificial chromosome libraries.
Genomics 1998;52(1):1-8.
1998: Peng Y Woon; Kazutoyo Osoegawa; Pamela J Kaisaki; B Zhao; JJ Catanese; Dominique Gauguier; R Cox; ER Levy; G Mark Lathrop; Anthony P Monaco; Pieter J de Jong
Construction and characterization of a 10-fold genome equivalent rat P1-derived artificial chromosome library.
Genomics 1998;50(3):306-16.
1996: Kazutoyo Osoegawa; S Okano; Y Kato; Y Nishimura; E Soeda
A 19-kb CpG island associated with single-minded gene 2 in Down syndrome chromosomal region.
DNA research : an international journal for rapid publication of reports on genes and genomes 1996;3(3):175-9.
1996: Kazutoyo Osoegawa; R Susukida; S Okano; Y Kato; Hans Lehrach; Dean Nizetic; E Soeda
Potential CpG-rich islands clustering around single-minded gene in Down syndrome chromosomal region.
Mammalian genome : official journal of the International Mammalian Genome Society 1996;7(6):461-3.
1996: Kazutoyo Osoegawa; R Susukida; S Okano; J Kudoh; S Minoshima; N Shimizu; Pieter J de Jong; Jürgen Groet; JH Ives; Hans Lehrach; Dean Nizetic; E Soeda
An integrated map with cosmid/PAC contigs of a 4-Mb Down syndrome critical region.
Genomics 1996;32(3):375-87.
1996: T Ohta; M Nakano; T Tsujita; K Abe; Kazutoyo Osoegawa; T Yamagata; K Yoshiura; Yoshihiro Jinno; E Soeda; Y Nakamura; Norio Niikawa
Isolation of a cosmid clone corresponding to an inv(21) breakpoint of a patient with transient abnormal myelopoiesis.
American journal of human genetics 1996;58(3):544-50.
1995: E Soeda; D X Hou; Kazutoyo Osoegawa; Y Atsuchi; T Yamagata; T Shimokawa; H Kishida; E Soeda; S Okano; I Chumakov
Cosmid assembly and anchoring to human chromosome 21.
Genomics 1995;25(1):73-84.