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Fatih Ozsolak

Research Profile

Procedures

Physiology

Chemicals & Drugs

Genes & Molecular Sequences

Genome, Human

Living Beings

Devices

Oligonucleotide Array Sequence Analysis

Anatomy

Tumor Cell Line

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Publications

TOP 3
Melissa L Wells; David C Fargo; Kevin E Gerrish; Weichun Huang; Leping Li; Fatih Ozsolak; Perry J Blackshear
Posttranscriptional regulation of cell-cell interaction protein-encoding transcripts by Zfs1p in Schizosaccharomyces pombe.
Yuefeng Lin; Teresa T Liu; Patrice M Milos; A Paula Monaghan; Fatih Ozsolak; Scott A Tenenbaum; Gustavo Arango-Argoty; Timothy Bailey; Sang Woo Kim; Zhihua Li; Bino John
An in-depth map of polyadenylation sites in cancer.
Alexander Sherstnev; Vasiliki Zacharaki; Geoffrey J Barton; Christian Cole; Céline Duc; Csaba Hornyik; Patrice M Milos; Fatih Ozsolak; Gordon G Simpson
Direct sequencing of Arabidopsis thaliana RNA reveals patterns of cleavage and polyadenylation.

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All Publications

2012: Melissa L Wells; David C Fargo; Kevin E Gerrish; Weichun Huang; Leping Li; Fatih Ozsolak; Perry J Blackshear
Posttranscriptional regulation of cell-cell interaction protein-encoding transcripts by Zfs1p in Schizosaccharomyces pombe.
Molecular and cellular biology 2012;32(20):4206-14.
2012: Yuefeng Lin; Teresa T Liu; Patrice M Milos; A Paula Monaghan; Fatih Ozsolak; Scott A Tenenbaum; Gustavo Arango-Argoty; Timothy Bailey; Sang Woo Kim; Zhihua Li; Bino John
An in-depth map of polyadenylation sites in cancer.
Nucleic acids research 2012;40(17):8460-71.
2012: Alexander Sherstnev; Vasiliki Zacharaki; Geoffrey J Barton; Christian Cole; Céline Duc; Csaba Hornyik; Patrice M Milos; Fatih Ozsolak; Gordon G Simpson
Direct sequencing of Arabidopsis thaliana RNA reveals patterns of cleavage and polyadenylation.
Nature structural & molecular biology 2012;19(8):845-52.
2012: Min Yu; Brinda Alagesan; Nabeel Bardeesy; Brian W Brannigan; Jordan C Ciciliano; Gianmarco Contino; Anna J Gilman; Shyamala Maheswaran; Patrice M Milos; Fatih Ozsolak; Suchismita Paul; Sridhar Ramaswamy; David P Ryan; Lecia V Sequist; Malgorzata E Smas; Shannon L Stott; David T Ting; Mehmet Toner; Matthew J Ulman; Daniel Winokur; Ben S Wittner; Kristina Xega; Daniel A Haber
RNA sequencing of pancreatic circulating tumour cells implicates WNT signalling in metastasis.
Nature 2012;487(7408):510-3.
2012: Ashish P Mogal; Fatih Ozsolak; Lorena Salavaggione; Mark A Watson; Peter A Humphrey
Gene expression profiles and differential cytoglobin expression in atrophy and adenocarcinoma of the prostate.
The Prostate 2012;72(9):931-7.
2012: Fatih Ozsolak
Third-generation sequencing techniques and applications to drug discovery.
Expert opinion on drug discovery 2012;7(3):231-43.
2012: Philipp Kapranov; Fatih Ozsolak; Patrice M Milos
Profiling of short RNAs using Helicos single-molecule sequencing.
Methods in molecular biology (Clifton, N.J.) 2012;822():219-32.
2011: Fatih Ozsolak; Patrice M Milos
Single-molecule direct RNA sequencing without cDNA synthesis.
Wiley interdisciplinary reviews. RNA 2011;2(4):565-70.
2011: Fatih Ozsolak; Patrice M Milos
RNA sequencing: advances, challenges and opportunities.
Nature reviews. Genetics 2011;12(2):87-98.
2011: Fatih Ozsolak; Patrice M Milos
Transcriptome profiling using single-molecule direct RNA sequencing.
Methods in molecular biology (Clifton, N.J.) 2011;733():51-61.
2010: Fatih Ozsolak; Philipp Kapranov; Sylvain Foissac; Sang Woo Kim; Elane Fishilevich; A Paula Monaghan; Bino John; Patrice M Milos
Comprehensive polyadenylation site maps in yeast and human reveal pervasive alternative polyadenylation.
Cell 2010;143(6):1018-29.
2010: Sushma Gurumurthy; Stephanie Z Xie; Brinda Alagesan; Judith Kim; Rushdia Z Yusuf; Borja Saez; Alexandros Tzatsos; Fatih Ozsolak; Patrice Milos; Francesco Ferrari; Peter J Park; Orian S Shirihai; David T Scadden; Nabeel Bardeesy
The Lkb1 metabolic sensor maintains haematopoietic stem cell survival.
Nature 2010;468(7324):659-63.
2010: Fatih Ozsolak; David T Ting; Ben S Wittner; Brian W Brannigan; Suchismita Paul; Nabeel Bardeesy; Sridhar Ramaswamy; Patrice M Milos; Daniel A Haber
Amplification-free digital gene expression profiling from minute cell quantities.
Nature methods 2010;7(8):619-21.
2010: Philipp Kapranov; Fatih Ozsolak; Sang Woo Kim; Sylvain Foissac; Doron Lipson; Chris Hart; Steve Roels; Christelle Borel; Stylianos E Antonarakis; A Paula Monaghan; Bino John; Patrice M Milos
New class of gene-termini-associated human RNAs suggests a novel RNA copying mechanism.
Nature 2010;466(7306):642-6.
2010: Fatih Ozsolak; Alon Goren; Melissa Gymrek; Mitchell Guttman; Aviv Regev; Bradley E Bernstein; Patrice M Milos
Digital transcriptome profiling from attomole-level RNA samples.
Genome research 2010;20(4):519-25.
2010: Philipp Kapranov; Georges St Laurent; Tal Raz; Fatih Ozsolak; Charles Patrick Reynolds; Poul H B Sorensen; Gregory Reaman; Patrice Milos; Robert J Arceci; John F Thompson; Timothy Triche
The majority of total nuclear-encoded non-ribosomal RNA in a human cell is 'dark matter' un-annotated RNA.
BMC biology 2010;8():149.
2010: Christopher Hart; Doron Lipson; Fatih Ozsolak; Tal Raz; Kathleen Steinmann; John Thompson; Patrice M Milos
Single-molecule sequencing: sequence methods to enable accurate quantitation.
Methods in enzymology 2010;472():407-30.
2010: Alon Goren; Fatih Ozsolak; Noam Shoresh; Manching Ku; Mazhar Adli; Chris Hart; Melissa Gymrek; Or Zuk; Aviv Regev; Patrice M Milos; Bradley E Bernstein
Chromatin profiling by directly sequencing small quantities of immunoprecipitated DNA.
Nature methods 2010;7(1):47-9.
2009: Fatih Ozsolak; Adam R Platt; Dan R Jones; Jeffrey G Reifenberger; Lauryn E Sass; Peter McInerney; John F Thompson; Jayson Bowers; Mirna Jarosz; Patrice M Milos
Direct RNA sequencing.
Nature 2009;461(7265):814-8.
2008: Fatih Ozsolak; Laura L Poling; Zhengxin Wang; Hui Liu; Xiaole (Shirley) Liu; Robert G Roeder; Xinmin Zhang; Jun S Song; David E Fisher
Chromatin structure analyses identify miRNA promoters.
Genes & development 2008;22(22):3172-83.
2007: Fatih Ozsolak; Jun S Song; Xiaole (Shirley) Liu; David E Fisher
High-throughput mapping of the chromatin structure of human promoters.
Nature biotechnology 2007;25(2):244-8.
2006: Ian Davis; Jessica J Kim; Fatih Ozsolak; Hans R Widlund; Orit Rozenblatt-Rosen; Scott R Granter; Jinyan Du; Jonathan A Fletcher; Christopher T Denny; Stephen L Lessnick; W Marston Linehan; Andrew L Kung; David E Fisher
Oncogenic MITF dysregulation in clear cell sarcoma: defining the MiT family of human cancers.
Cancer cell 2006;9(6):473-84.
2006: Elizabeth E Slawson; Christopher D Shaffer; Colin D Malone; Wilson Leung; Elmer Kellmann; Rachel B Shevchek; Carolyn A Craig; Seth M Bloom; James Bogenpohl; James Dee; Emiko T A Morimoto; Jenny Myoung; Andrew S Nett; Fatih Ozsolak; Mindy E Tittiger; Andrea Zeug; Mary-Lou Pardue; Jeremy Buhler; Elaine R Mardis; Sarah C R Elgin
Comparison of dot chromosome sequences from D. melanogaster and D. virilis reveals an enrichment of DNA transposon sequences in heterochromatic domains.
Genome biology 2006;7(2):R15.