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Douglas Berg
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24
Kersulyte, Dangeruta
16
Dailidiene, Daiva
12
Gilman, Robert
11
Dailide, Giedrius
10
Mukhopadhyay, Asish
8
Velapatiño, Billie
8
Akopyants, Natalia
8
Hoffman, Paul
6
Jeong, Jin-Yong
6
Kalia, Awdhesh
5
Parkinson, Alan
5
Raudonikiene, Ausra
5
Goodwin, Avery
4
Ito, Yoshiyuki
4
Arnqvist, Anna
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All Publications
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2009: Gehmert Sebastian; Velapatiño Billie; Herrera Phabiola; Balqui Jaqueline; Santivañez Livia; Cok Jaime; Vargas Gloria; Combe Juan; Passaro Douglas J; Wen Sijin; Meyer Frank; Berg Douglas E; Gilman Robert H
Interleukin-1 beta single-nucleotide polymorphism's C allele is associated with elevated risk of gastric cancer in Helicobacter pylori-infected Peruvians.
The American journal of tropical medicine and hygiene 2009;81(5):804-10.
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2009: Kersulyte Dangeruta; Lee Wookon; Subramaniam Dharmalingam; Anant Shrikant; Herrera Phabiola; Cabrera Lilia; Balqui Jacqueline; Barabas Orsolya; Kalia Awdhesh; Gilman Robert H; Berg Douglas E
Helicobacter Pylori's plasticity zones are novel transposable elements.
PloS one 2009;4(9):e6859.
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2008: Herrera Phabiola M; Mendez Melissa; Velapatiño Billie; Santivañez Livia; Balqui Jacqueline; Finger S Alison; Sherman Jonathan; Zimic Mirko; Cabrera Lilia; Watanabe Jose; Rodríguez Carlos; Gilman Robert H; Berg Douglas E
DNA-level diversity and relatedness of Helicobacter pylori strains in shantytown families in Peru and transmission in a developing-country setting.
Journal of clinical microbiology 2008;46(12):3912-8.
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2007: Ogura Masako; Perez J Christian; Mittl Peer R E; Lee Hae-Kyung; Dailide Geidrius; Tan Shumin; Ito Yoshiyuki; Secka Ousman; Dailidiene Daiva; Putty Kalyani; Berg Douglas E; Kalia Awdhesh
Helicobacter pylori evolution: lineage- specific adaptations in homologs of eukaryotic Sel1-like genes.
PLoS computational biology 2007;3(8):e151.
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2007: Dailidiene Daiva; Tan Shumin; Ogura Keiji; Zhang Maojun; Lee Amy H; Severinov Konstantin; Berg Douglas E
Urea sensitization caused by separation of Helicobacter pylori RNA polymerase beta and beta' subunits.
Helicobacter 2007;12(2):103-11.
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2006: Bruce Michael G; Bruden Dana L; McMahon Brian J; Hennessy Thomas W; Reasonover Alisa; Morris Julie; Hurlburt Debby A; Peters Helen; Sacco Frank; Martinez Patrick; Swenson Michael; Berg Douglas E; Parks Debra; Parkinson Alan J
Alaska sentinel surveillance for antimicrobial resistance in Helicobacter pylori isolates from Alaska native persons, 1999-2003.
Helicobacter 2006;11(6):581-8.
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2006: Lee Woo-Kon; Ogura Keiji; Loh John T; Cover Timothy L; Berg Douglas E
Quantitative effect of luxS gene inactivation on the fitness of Helicobacter pylori.
Applied and environmental microbiology 2006;72(10):6615-22.
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2006: Dailidiene Daiva; Dailide Giedrius; Kersulyte Dangeruta; Berg Douglas E
Contraselectable streptomycin susceptibility determinant for genetic manipulation and analysis of Helicobacter pylori.
Applied and environmental microbiology 2006;72(9):5908-14.
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2006: Finger S Alison; Velapatiño Billie; Kosek Margaret; Santivañez Livia; Dailidiene Daiva; Quino Willi; Balqui Jacqueline; Herrera Phabiola; Berg Douglas E; Gilman Robert H
Effectiveness of enterobacterial repetitive intergenic consensus PCR and random amplified polymorphic DNA fingerprinting for Helicobacter pylori strain differentiation.
Applied and environmental microbiology 2006;72(7):4713-6.
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2006: McMahon B J; Bruce M G; Hennessy T W; Bruden D L; Sacco F; Peters H; Hurlburt D A; Morris J M; Reasonover A L; Dailide G; Berg D E; Parkinson A J
Reinfection after successful eradication of Helicobacter pylori: a 2-year prospective study in Alaska Natives.
Alimentary pharmacology & therapeutics 2006;23(8):1215-23.
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2006: Velapatiño Billie; Balqui Jacqueline; Gilman Robert H; Bussalleu Alejandro; Quino Willi; Finger S Alison; Santivañez Livia; Herrera Phabiola; Piscoya Alejandro; Valdivia Jose; Cok Jaime; Berg Douglas E
Validation of string test for diagnosis of Helicobacter pylori infections.
Journal of clinical microbiology 2006;44(3):976-80.
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2006: Aspholm Marina; Kalia Awdhesh; Ruhl Stefan; Schedin Staffan; Arnqvist Anna; Lindén Sara; Sjöström Rolf; Gerhard Markus; Semino-Mora Cristina; Dubois Andre; Unemo Magnus; Danielsson Dan; Teneberg Susann; Lee Woo-Kon; Berg Douglas E; Borén Thomas
Helicobacter pylori adhesion to carbohydrates.
Methods in enzymology 2006;417():293-339.
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2005: Albert Thomas J; Dailidiene Daiva; Dailide Giedrius; Norton Jason E; Kalia Awdhesh; Richmond Todd A; Molla Michael; Singh Jaz; Green Roland D; Berg Douglas E
Mutation discovery in bacterial genomes: metronidazole resistance in Helicobacter pylori.
Nature methods 2005;2(12):951-3.
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2005: Tan Shumin; Fraley Cresson D; Zhang Maojun; Dailidiene Daiva; Kornberg Arthur; Berg Douglas E
Diverse phenotypes resulting from polyphosphate kinase gene (ppk1) inactivation in different strains of Helicobacter pylori.
Journal of bacteriology 2005;187(22):7687-95.
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2005: Morris Julie M; Reasonover Alisa L; Bruce Michael G; Bruden Dana L; McMahon Brian J; Sacco Frank D; Berg Douglas E; Parkinson Alan J
Evaluation of seaFAST, a rapid fluorescent in situ hybridization test, for detection of Helicobacter pylori and resistance to clarithromycin in paraffin-embedded biopsy sections.
Journal of clinical microbiology 2005;43(7):3494-6.
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2005: Suto Hiroyuki; Zhang Maojun; Berg Douglas E
Age-dependent changes in susceptibility of suckling mice to individual strains of Helicobacter pylori.
Infection and immunity 2005;73(2):1232-4.
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2004: McNulty Shannon L; Mole Beth M; Dailidiene Daiva; Segal Issy; Ally Reid; Mistry Rajesh; Secka Ousman; Adegbola Richard A; Thomas Julian E; Lenarcic Erik M; Peek Richard M; Berg Douglas E; Forsyth Mark H
Novel 180- and 480-base-pair insertions in African and African-American strains of Helicobacter pylori.
Journal of clinical microbiology 2004;42(12):5658-63.
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2004: Bäckström Anna; Lundberg Carina; Kersulyte Dangeruta; Berg Douglas E; Borén Thomas; Arnqvist Anna
Metastability of Helicobacter pylori bab adhesin genes and dynamics in Lewis b antigen binding.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(48):16923-8.
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2004: Kersulyte Dangeruta; Kalia Awdhesh; Zhang MaoJun; Lee Hae-Kyung; Subramaniam Dharmalingam; Kiuduliene Levute; Chalkauskas Henrikas; Berg Douglas E
Sequence organization and insertion specificity of the novel chimeric ISHp609 transposable element of Helicobacter pylori.
Journal of bacteriology 2004;186(22):7521-8.
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2004: Kalia Awdhesh; Mukhopadhyay Asish K; Dailide Giedrius; Ito Yoshiyki; Azuma Takeshi; Wong Benjamin C Y; Berg Douglas E
Evolutionary dynamics of insertion sequences in Helicobacter pylori.
Journal of bacteriology 2004;186(22):7508-20.
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2004: Tan Shumin; Berg Douglas E
Motility of urease-deficient derivatives of Helicobacter pylori.
Journal of bacteriology 2004;186(3):885-8.
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2004: Dailidiene Daiva; Dailide Giedrius; Ogura Keiji; Zhang Maojun; Mukhopadhyay Asish K; Eaton Kathryn A; Cattoli Giovanni; Kusters Johannes G; Berg Douglas E
Helicobacter acinonychis: genetic and rodent infection studies of a Helicobacter pylori-like gastric pathogen of cheetahs and other big cats.
Journal of bacteriology 2004;186(2):356-65.
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2003: Soto Giselle; Bautista Christian T; Roth Daniel E; Gilman Robert H; Velapatiño Billie; Ogura Masako; Dailide Giedrius; Razuri Manuel; Meza Rina; Katz Uriel; Monath Thomas P; Berg Douglas E; Taylor David N;
Helicobacter pylori reinfection is common in Peruvian adults after antibiotic eradication therapy.
The Journal of infectious diseases 2003;188(9):1263-75.
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2003: Bury-Moné Stéphanie; Skouloubris Stéphane; Dauga Catherine; Thiberge Jean-Michel; Dailidiene Daiva; Berg Douglas E; Labigne Agnès; De Reuse Hilde
Presence of active aliphatic amidases in Helicobacter species able to colonize the stomach.
Infection and immunity 2003;71(10):5613-22.
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2003: Akada Junko K; Ogura Keiji; Dailidiene Daiva; Dailide Giedrius; Cheverud James M; Berg Douglas E
Helicobacter pylori tissue tropism: mouse-colonizing strains can target different gastric niches.
Microbiology (Reading, England) 2003;149(Pt 7):1901-9.
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2003: Kersulyte Dangeruta; Velapatiño Billie; Mukhopadhyay Asish K; Cahuayme Lizbeth; Bussalleu Alejandro; Combe Juan; Gilman Robert H; Berg Douglas E
Cluster of type IV secretion genes in Helicobacter pylori's plasticity zone.
Journal of bacteriology 2003;185(13):3764-72.
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2003: Straubinger Reinhard K; Greiter Andrea; McDonough Sean P; Gerold Alexander; Scanziani Eugenio; Soldati Sabina; Dailidiene Daiva; Dailide Giedrius; Berg Douglas E; Simpson Kenneth W
Quantitative evaluation of inflammatory and immune responses in the early stages of chronic Helicobacter pylori infection.
Infection and immunity 2003;71(5):2693-703.
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2003: Mukhopadhyay Asish K; Jeong Jin-Yong; Dailidiene Daiva; Hoffman Paul S; Berg Douglas E
The fdxA ferredoxin gene can down-regulate frxA nitroreductase gene expression and is essential in many strains of Helicobacter pylori.
Journal of bacteriology 2003;185(9):2927-35.
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2003: Wang W H; Wong W M; Dailidiene D; Berg D E; Gu Q; Lai K C; Lam S K; Wong B C Y
Aspirin inhibits the growth of Helicobacter pylori and enhances its susceptibility to antimicrobial agents.
Gut 2003;52(4):490-5.
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2002: Dailidiene Daiva; Bertoli M Teresita; Miciuleviciene Jolanta; Mukhopadhyay Asish K; Dailide Giedrius; Pascasio Mario Alberto; Kupcinskas Limas; Berg Douglas E
Emergence of tetracycline resistance in Helicobacter pylori: multiple mutational changes in 16S ribosomal DNA and other genetic loci.
Antimicrobial agents and chemotherapy 2002;46(12):3940-6.
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2002: Mahdavi Jafar; Sondén Berit; Hurtig Marina; Olfat Farzad O; Forsberg Lina; Roche Niamh; Angstrom Jonas; Larsson Thomas; Teneberg Susann; Karlsson Karl-Anders; Altraja Siiri; Wadström Torkel; Kersulyte Dangeruta; Berg Douglas E; Dubois Andre; Petersson Christoffer; Magnusson Karl-Eric; Norberg Thomas; Lindh Frank; Lundskog Bertil B; Arnqvist Anna; Hammarström Lennart; Borén Thomas
Helicobacter pylori SabA adhesin in persistent infection and chronic inflammation.
Science (New York, N.Y.) 2002;297(5581):573-8.
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2002: Sisson Gary; Goodwin Avery; Raudonikiene Ausra; Hughes Nicky J; Mukhopadhyay Asish K; Berg Douglas E; Hoffman Paul S
Enzymes associated with reductive activation and action of nitazoxanide, nitrofurans, and metronidazole in Helicobacter pylori.
Antimicrobial agents and chemotherapy 2002;46(7):2116-23.
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2002: Kersulyte Dangeruta; Velapatiño Billie; Dailide Giedrius; Mukhopadhyay Asish K; Ito Yoshiyuki; Cahuayme Lizbeth; Parkinson Alan J; Gilman Robert H; Berg Douglas E
Transposable element ISHp608 of Helicobacter pylori: nonrandom geographic distribution, functional organization, and insertion specificity.
Journal of bacteriology 2002;184(4):992-1002.
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2001: Jeong J Y; Mukhopadhyay A K; Akada J K; Dailidiene D; Hoffman P S; Berg D E
Roles of FrxA and RdxA nitroreductases of Helicobacter pylori in susceptibility and resistance to metronidazole.
Journal of bacteriology 2001;183(17):5155-62.
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2001: Mukhopadhyay A K; Chakraborty S; Takeda Y; Nair G B; Berg D E
Characterization of VPI pathogenicity island and CTXphi prophage in environmental strains of Vibrio cholerae.
Journal of bacteriology 2001;183(16):4737-46.
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2001: Roth D E; Velapatiño B; Gilman R H; Su W W; Berg D E; Cabrera L; Garcia E
A comparison of a string test-PCR assay and a stool antigen immunoassay (HpSA) for Helicobacter pylori screening in Peru.
Transactions of the Royal Society of Tropical Medicine and Hygiene 2001;95(4):398-9.
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2001: Figueroa-Arredondo P; Heuser J E; Akopyants N S; Morisaki J H; Giono-Cerezo S; Enríquez-Rincón F; Berg D E
Cell vacuolation caused by Vibrio cholerae hemolysin.
Infection and immunity 2001;69(3):1613-24.
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2000: Jeong J Y; Berg D E
Mouse-colonizing Helicobacter pylori SS1 is unusually susceptible to metronidazole due to two complementary reductase activities.
Antimicrobial agents and chemotherapy 2000;44(11):3127-32.
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2000: Sisson G; Jeong J Y; Goodwin A; Bryden L; Rossler N; Lim-Morrison S; Raudonikiene A; Berg D E; Hoffman P S
Metronidazole activation is mutagenic and causes DNA fragmentation in Helicobacter pylori and in Escherichia coli containing a cloned H. pylori RdxA(+) (Nitroreductase) gene.
Journal of bacteriology 2000;182(18):5091-6.
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2000: Jeong J Y; Mukhopadhyay A K; Dailidiene D; Wang Y; Velapatiño B; Gilman R H; Parkinson A J; Nair G B; Wong B C; Lam S K; Mistry R; Segal I; Yuan Y; Gao H; Alarcon T; Brea M L; Ito Y; Kersulyte D; Lee H K; Gong Y; Goodwin A; Hoffman P S; Berg D E
Sequential inactivation of rdxA (HP0954) and frxA (HP0642) nitroreductase genes causes moderate and high-level metronidazole resistance in Helicobacter pylori.
Journal of bacteriology 2000;182(18):5082-90.
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2000: Mukhopadhyay A K; Kersulyte D; Jeong J Y; Datta S; Ito Y; Chowdhury A; Chowdhury S; Santra A; Bhattacharya S K; Azuma T; Nair G B; Berg D E
Distinctiveness of genotypes of Helicobacter pylori in Calcutta, India.
Journal of bacteriology 2000;182(11):3219-27.
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2000: Caviedes L; Lee T S; Gilman R H; Sheen P; Spellman E; Lee E H; Berg D E; Montenegro-James S
Rapid, efficient detection and drug susceptibility testing of Mycobacterium tuberculosis in sputum by microscopic observation of broth cultures. The Tuberculosis Working Group in Peru.
Journal of clinical microbiology 2000;38(3):1203-8.
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1999: Debets-Ossenkopp Y J; Pot R G; van Westerloo D J; Goodwin A; Vandenbroucke-Grauls C M; Berg D E; Hoffman P S; Kusters J G
Insertion of mini-IS605 and deletion of adjacent sequences in the nitroreductase (rdxA) gene cause metronidazole resistance in Helicobacter pylori NCTC11637.
Antimicrobial agents and chemotherapy 1999;43(11):2657-62.
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1999: Li S D; Kersulyte D; Lindley I J; Neelam B; Berg D E; Crabtree J E
Multiple genes in the left half of the cag pathogenicity island of Helicobacter pylori are required for tyrosine kinase-dependent transcription of interleukin-8 in gastric epithelial cells.
Infection and immunity 1999;67(8):3893-9.
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1999: Achtman M; Azuma T; Berg D E; Ito Y; Morelli G; Pan Z J; Suerbaum S; Thompson S A; van der Ende A; van Doorn L J
Recombination and clonal groupings within Helicobacter pylori from different geographical regions.
Molecular microbiology 1999;32(3):459-70.
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1999: Raudonikiene A; Zakharova N; Su W W; Jeong J Y; Bryden L; Hoffman P S; Berg D E; Severinov K
Helicobacter pylori with separate beta- and beta'-subunits of RNA polymerase is viable and can colonize conventional mice.
Molecular microbiology 1999;32(1):131-8.
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1999: Kersulyte D; Chalkauskas H; Berg D E
Emergence of recombinant strains of Helicobacter pylori during human infection.
Molecular microbiology 1999;31(1):31-43.
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1998: Chalkauskas H; Kersulyte D; Cepuliene I; Urbonas V; Ruzeviciene D; Barakauskiene A; Raudonikiene A; Berg D E
Genotypes of Helicobacter pylori in Lithuanian families.
Helicobacter 1998;3(4):296-302.
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1998: Kersulyte D; Akopyants N S; Clifton S W; Roe B A; Berg D E
Novel sequence organization and insertion specificity of IS605 and IS606: chimaeric transposable elements of Helicobacter pylori.
Gene 1998;223(1-2):175-86.
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1998: Akopyants N S; Fradkov A; Diatchenko L; Hill J E; Siebert P D; Lukyanov S A; Sverdlov E D; Berg D E
PCR-based subtractive hybridization and differences in gene content among strains of Helicobacter pylori.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(22):13108-13.
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1998: Pan Z J; Berg D E; van der Hulst R W; Su W W; Raudonikiene A; Xiao S D; Dankert J; Tytgat G N; van der Ende A
Prevalence of vacuolating cytotoxin production and distribution of distinct vacA alleles in Helicobacter pylori from China.
The Journal of infectious diseases 1998;178(1):220-6.
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1998: Goodwin A; Kersulyte D; Sisson G; Veldhuyzen van Zanten S J; Berg D E; Hoffman P S
Metronidazole resistance in Helicobacter pylori is due to null mutations in a gene (rdxA) that encodes an oxygen-insensitive NADPH nitroreductase.
Molecular microbiology 1998;28(2):383-93.
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1998: Akopyants N S; Clifton S W; Kersulyte D; Crabtree J E; Youree B E; Reece C A; Bukanov N O; Drazek E S; Roe B A; Berg D E
Analyses of the cag pathogenicity island of Helicobacter pylori.
Molecular microbiology 1998;28(1):37-53.
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1998: Ilver D; Arnqvist A; Ogren J; Frick I M; Kersulyte D; Incecik E T; Berg D E; Covacci A; Engstrand L; Borén T
Helicobacter pylori adhesin binding fucosylated histo-blood group antigens revealed by retagging.
Science (New York, N.Y.) 1998;279(5349):373-7.
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1997: Berg D E; Gilman R H; Lelwala-Guruge J; Srivastava K; Valdez Y; Watanabe J; Miyagi J; Akopyants N S; Ramirez-Ramos A; Yoshiwara T H; Recavarren S; Leon-Barua R
Helicobacter pylori populations in Peruvian patients.
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 1997;25(5):996-1002.
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1997: Akopyants N S; Jiang Q; Taylor D E; Berg D E
Corrected identity of isolates of Helicobacter pylori reference strain NCTC11637.
Helicobacter 1997;2(1):48-52.
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1996: Brikun I; Suziedelis K; Stemmann O; Zhong R; Alikhanian L; Linkova E; Mironov A; Berg D E
Analysis of CRP-CytR interactions at the Escherichia coli udp promoter.
Journal of bacteriology 1996;178(6):1614-22.
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1995: Drazek E S; Dubois A; Holmes R K; Kersulyte D; Akopyants N S; Berg D E; Warren R L
Cloning and characterization of hemolytic genes from Helicobacter pylori.
Infection and immunity 1995;63(11):4345-9.
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1995: LaBanca F; Krishnan B R; Chaplin D D; Berg D E; Berg C M
Restriction map of a 35-kb HLA fragment constructed by nested deletion 'drop-out' mapping.
Gene 1995;164(2):335-9.
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1995: Kersulyte D; Struelens M J; Deplano A; Berg D E
Comparison of arbitrarily primed PCR and macrorestriction (pulsed-field gel electrophoresis) typing of Pseudomonas aeruginosa strains from cystic fibrosis patients.
Journal of clinical microbiology 1995;33(8):2216-9.
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1995: Krishnan B R; Jamry I; Berg D E; Berg C M; Chaplin D D
Construction of a genomic DNA 'feature map' by sequencing from nested deletions: application to the HLA class I region.
Nucleic acids research 1995;23(1):117-22.
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1995: Akopyants N S; Eaton K A; Berg D E
Adaptive mutation and cocolonization during Helicobacter pylori infection of gnotobiotic piglets.
Infection and immunity 1995;63(1):116-21.
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1994: Bukanov N; Ravi V N; Miller D; Srivastava K; Berg D E
Pseudomonas aeruginosa corneal ulcer isolates distinguished using the arbitrarily primed PCR DNA fingerprinting method.
Current eye research 1994;13(11):783-90.
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1994: Woods J P; Kersulyte D; Tolan R W; Berg C M; Berg D E
Use of arbitrarily primed polymerase chain reaction analysis to type disease and carrier strains of Neisseria meningitidis isolated during a university outbreak.
The Journal of infectious diseases 1994;169(6):1384-9.
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1994: Brikun I; Suziedelis K; Berg D E
DNA sequence divergence among derivatives of Escherichia coli K-12 detected by arbitrary primer PCR (random amplified polymorphic DNA) fingerprinting.
Journal of bacteriology 1994;176(6):1673-82.
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1994: Wang G; Xu X; Chen J M; Berg D E; Berg C M
Inversions and deletions generated by a mini-gamma delta (Tn1000) transposon.
Journal of bacteriology 1994;176(5):1332-8.
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1994: Bukanov N O; Berg D E
Ordered cosmid library and high-resolution physical-genetic map of Helicobacter pylori strain NCTC11638.
Molecular microbiology 1994;11(3):509-23.
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1993: Wang G; Whittam T S; Berg C M; Berg D E
RAPD (arbitrary primer) PCR is more sensitive than multilocus enzyme electrophoresis for distinguishing related bacterial strains.
Nucleic acids research 1993;21(25):5930-3.
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1993: Wang G; Blakesley R W; Berg D E; Berg C M
pDUAL: a transposon-based cosmid cloning vector for generating nested deletions and DNA sequencing templates in vivo.
Proceedings of the National Academy of Sciences of the United States of America 1993;90(16):7874-8.
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1993: Neuwald A F; Krishnan B R; Ahrweiler P M; Frieden C; Berg D E
Conditional dihydrofolate reductase deficiency due to transposon Tn5tac1 insertion downstream from the folA gene in Escherichia coli.
Gene 1993;125(1):69-73.
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1993: Woods J P; Kersulyte D; Goldman W E; Berg D E
Fast DNA isolation from Histoplasma capsulatum: methodology for arbitrary primer polymerase chain reaction-based epidemiological and clinical studies.
Journal of clinical microbiology 1993;31(2):463-4.
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1993: Krishnan B R; Berg D E
Viability of folA-null derivatives of wild-type (thyA+) Escherichia coli K-12.
Journal of bacteriology 1993;175(3):909-11.
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1993: Berg C M; Wang G; Strausbaugh L D; Berg D E
Transposon-facilitated sequencing of DNAs cloned in plasmids.
Methods in enzymology 1993;218():279-306.
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1993: Krishnan B R; Kersulyte D; Brikun I; Huang H V; Berg C M; Berg D E
Transposon-based and polymerase chain reaction-based sequencing of DNAs cloned in lambda phage.
Methods in enzymology 1993;218():258-79.
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1992: Akopyanz N; Bukanov N O; Westblom T U; Berg D E
PCR-based RFLP analysis of DNA sequence diversity in the gastric pathogen Helicobacter pylori.
Nucleic acids research 1992;20(23):6221-5.
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1992: Kersulyte D; Woods J P; Keath E J; Goldman W E; Berg D E
Diversity among clinical isolates of Histoplasma capsulatum detected by polymerase chain reaction with arbitrary primers.
Journal of bacteriology 1992;174(22):7075-9.
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1992: Akopyanz N; Bukanov N O; Westblom T U; Kresovich S; Berg D E
DNA diversity among clinical isolates of Helicobacter pylori detected by PCR-based RAPD fingerprinting.
Nucleic acids research 1992;20(19):5137-42.
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1992: Kersulyte D; Krishnan B R; Berg D E
Nonrandom orientation of transposon Tn5supF insertions in phage lambda.
Gene 1992;114(1):91-6.
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1992: Berg C M; Vartak N B; Wang G; Xu X; Liu L; MacNeil D J; Gewain K M; Wiater L A; Berg D E
The m gamma delta-1 element, a small gamma delta (Tn1000) derivative useful for plasmid mutagenesis, allele replacement and DNA sequencing.
Gene 1992;113(1):9-16.
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1992: Neuwald A F; Krishnan B R; Brikun I; Kulakauskas S; Suziedelis K; Tomcsanyi T; Leyh T S; Berg D E
cysQ, a gene needed for cysteine synthesis in Escherichia coli K-12 only during aerobic growth.
Journal of bacteriology 1992;174(2):415-25.
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1991: Krishnan B R; Kersulyte D; Brikun I; Berg C M; Berg D E
Direct and crossover PCR amplification to facilitate Tn5supF-based sequencing of lambda phage clones.
Nucleic acids research 1991;19(22):6177-82.
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1991: Lodge J K; Weston-Hafer K; Berg D E
Tn5 insertion specificity is not influenced by IS50 end sequences in target DNA.
Molecular & general genetics : MGG 1991;228(1-2):312-5.
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1991: Weston-Hafer K; Berg D E
Deletions in plasmid pBR322: replication slippage involving leading and lagging strands.
Genetics 1991;127(4):649-55.
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1991: Kulakauskas S; Wikström P M; Berg D E
Efficient introduction of cloned mutant alleles into the Escherichia coli chromosome.
Journal of bacteriology 1991;173(8):2633-8.
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1991: Krishnan B R; Blakesley R W; Berg D E
Linear amplification DNA sequencing directly from single phage plaques and bacterial colonies.
Nucleic acids research 1991;19(5):1153.
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1991: Dodson K W; Berg D E
A sequence at the inside end of IS50 down regulates transposition.
Plasmid 1991;25(2):145-8.
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1991: Phadnis S H; Kulakauskas S; Krishnan B R; Hiemstra J; Berg D E
Transposon Tn5supF-based reverse genetic method for mutational analysis of Escherichia coli with DNAs cloned in lambda phage.
Journal of bacteriology 1991;173(2):896-9.
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1991: Weston-Hafer K; Berg D E
Limits to the role of palindromy in deletion formation.
Journal of bacteriology 1991;173(1):315-8.
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1990: Tomcsanyi T; Berg C M; Phadnis S H; Berg D E
Intramolecular transposition by a synthetic IS50 (Tn5) derivative.
Journal of bacteriology 1990;172(11):6348-54.
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1990: Lodge J K; Berg D E
Mutations that affect Tn5 insertion into pBR322: importance of local DNA supercoiling.
Journal of bacteriology 1990;172(10):5956-60.
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1990: Kazic T; Berg D E
Context effects in the formation of deletions in Escherichia coli.
Genetics 1990;126(1):17-24.
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1990: Cookson B T; Berg D E; Goldman W E
Mutagenesis of Bordetella pertussis with transposon Tn5tac1: conditional expression of virulence-associated genes.
Journal of bacteriology 1990;172(4):1681-7.
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1989: Dodson K W; Berg D E
Saturation mutagenesis of the inside end of insertion sequence IS50.
Gene 1989;85(1):75-81.
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1989: Phadnis S H; Huang H V; Berg D E
Tn5supF, a 264-base-pair transposon derived from Tn5 for insertion mutagenesis and sequencing DNAs cloned in phage lambda.
Proceedings of the National Academy of Sciences of the United States of America 1989;86(15):5908-12.
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1989: Lodge J K; Kazic T; Berg D E
Formation of supercoiling domains in plasmid pBR322.
Journal of bacteriology 1989;171(4):2181-7.
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1989: Berg C M; Liu L; Coon M; Strausbaugh L D; Gray P; Vartak N B; Brown M; Talbot D; Berg D E
pBR322-derived multicopy plasmids harboring large inserts are often dimers in Escherichia coli K-12.
Plasmid 1989;21(2):138-41.
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1989: Dodson K W; Berg D E
Factors affecting transposition activity of IS50 and Tn5 ends.
Gene 1989;76(2):207-13.
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1988: Lodge J K; Weston-Hafer K; Berg D E
Transposon Tn5 target specificity: preference for insertion at G/C pairs.
Genetics 1988;120(3):645-50.
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1988: Chow W Y; Berg D E
Tn5tac1, a derivative of transposon Tn5 that generates conditional mutations.
Proceedings of the National Academy of Sciences of the United States of America 1988;85(17):6468-72.
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1988: Nag D K; Huang H V; Berg D E
Bidirectional chain-termination nucleotide sequencing: transposon Tn5seq1 as a mobile source of primer sites.
Gene 1988;64(1):135-45.
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