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Qun Pan

Research Profile

Chemicals & Drugs

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Mouse

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Gene Expression Profiling

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Publications

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Nuno Barbosa-Morais; Recep Colak; Brendan J Frey; Serge Gueroussov; Manuel Irimia; Philip M Kim; TaeHyung Kim; Claudia Kutter; Leo J Lee; Christine M Misquitta-Ali; Duncan T Odom; Qun Pan; Valentina Slobodeniuc; Stephen Watt; Michael D Wilson; Hui Y Xiong; Benjamin J Blencowe
The evolutionary landscape of alternative splicing in vertebrate species.
Jonathan D Ellis; Manuel Irimia; Philip M Kim; Taehyung Kim; Dave O'Hanlon; Qun Pan; Xinchen Wang; Jeffrey L Wrana; Miriam Barrios-Rodiles; John A Calarco; Recep Colak; Benjamin J Blencowe
Tissue-specific alternative splicing remodels protein-protein interaction networks.
Mathieu Gabut; Timothy R Hughes; Esteban O Mazzoni; Andras Nagy; Stephane Nedelec; David O'Hanlon; Qun Pan; Payman Samavarchi-Tehrani; Valentina Slobodeniuc; Hoon-Ki Sung; Shaheynoor Talukder; Xinchen Wang; Hynek Wichterle; Knut Woltjen; Jeffrey L Wrana; Peter W Zandstra; Manuel Alvarez; Benjamin J Blencowe
An alternative splicing switch regulates embryonic stem cell pluripotency and reprogramming.

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All Publications

2012: Nuno Barbosa-Morais; Recep Colak; Brendan J Frey; Serge Gueroussov; Manuel Irimia; Philip M Kim; TaeHyung Kim; Claudia Kutter; Leo J Lee; Christine M Misquitta-Ali; Duncan T Odom; Qun Pan; Valentina Slobodeniuc; Stephen Watt; Michael D Wilson; Hui Y Xiong; Benjamin J Blencowe
The evolutionary landscape of alternative splicing in vertebrate species.
Science (New York, N.Y.) 2012;338(6114):1587-93.
2012: Jonathan D Ellis; Manuel Irimia; Philip M Kim; Taehyung Kim; Dave O'Hanlon; Qun Pan; Xinchen Wang; Jeffrey L Wrana; Miriam Barrios-Rodiles; John A Calarco; Recep Colak; Benjamin J Blencowe
Tissue-specific alternative splicing remodels protein-protein interaction networks.
Molecular cell 2012;46(6):884-92.
2011: Mathieu Gabut; Timothy R Hughes; Esteban O Mazzoni; Andras Nagy; Stephane Nedelec; David O'Hanlon; Qun Pan; Payman Samavarchi-Tehrani; Valentina Slobodeniuc; Hoon-Ki Sung; Shaheynoor Talukder; Xinchen Wang; Hynek Wichterle; Knut Woltjen; Jeffrey L Wrana; Peter W Zandstra; Manuel Alvarez; Benjamin J Blencowe
An alternative splicing switch regulates embryonic stem cell pluripotency and reprogramming.
Cell 2011;147(1):132-46.
2011: Bushra Raj; Debashish Ray; John P Vessey; Noel J Buckley; Freda D Miller; Dave O'Hanlon; Qun Pan; Benjamin J Blencowe
Cross-regulation between an alternative splicing activator and a transcription repressor controls neurogenesis.
Molecular cell 2011;43(5):843-50.
2011: Joanna Y Ip; Dominic Schmidt; Qun Pan; Arun K Ramani; Andrew G Fraser; Duncan T Odom; Benjamin J Blencowe
Global impact of RNA polymerase II elongation inhibition on alternative splicing regulation.
Genome research 2011;21(3):390-401.
2011: Arneet L Saltzman; Qun Pan; Benjamin J Blencowe
Regulation of alternative splicing by the core spliceosomal machinery.
Genes & development 2011;25(4):373-84.
2011: Arun K Ramani; John A Calarco; Qun Pan; Sepand Mavandadi; Ying Wang; Andrew C Nelson; Leo J Lee; Quaid Morris; Benjamin J Blencowe; Mei Zhen; Andrew G Fraser
Genome-wide analysis of alternative splicing in Caenorhabditis elegans.
Genome research 2011;21(2):342-8.
2010: Yoseph Barash; John A Calarco; Weijun Gao; Qun Pan; Xinchen Wang; Ofer Shai; Benjamin J Blencowe; Brendan J Frey
Deciphering the splicing code.
Nature 2010;465(7294):53-9.
2009: John A Calarco; Simone Superina; David O'Hanlon; Mathieu Gabut; Bushra Raj; Qun Pan; Ursula Skalska; Laura Clarke; Danielle Gelinas; Derek van der Kooy; Mei Zhen; Brian Ciruna; Benjamin J Blencowe
Regulation of vertebrate nervous system alternative splicing and development by an SR-related protein.
Cell 2009;138(5):898-910.
2008: Qun Pan; Ofer Shai; Leo J Lee; Brendan J Frey; Benjamin J Blencowe
Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing.
Nature genetics 2008;40(12):1413-5.
2008: Arneet L Saltzman; Yoon Ki Kim; Qun Pan; Matthew M Fagnani; Lynne E Maquat; Benjamin J Blencowe
Regulation of multiple core spliceosomal proteins by alternative splicing-coupled nonsense-mediated mRNA decay.
Molecular and cellular biology 2008;28(13):4320-30.
2007: John A Calarco; Yi Xing; Mario Cáceres; Joseph P Calarco; Xinshu Xiao; Qun Pan; Christopher Lee; Todd M Preuss; Benjamin J Blencowe
Global analysis of alternative splicing differences between humans and chimpanzees.
Genes & development 2007;21(22):2963-75.
2007: Joanna Y Ip; Alan Tong; Qun Pan; Justin D Topp; Benjamin J Blencowe; Kristen W Lynch
Global analysis of alternative splicing during T-cell activation.
RNA (New York, N.Y.) 2007;13(4):563-72.
2007: Matthew Fagnani; Yoseph Barash; Joanna Y Ip; Christine M Misquitta; Qun Pan; Arneet L Saltzman; Ofer Shai; Leo Lee; Aviad Rozenhek; Naveed Mohammad; Sandrine Willaime-Morawek; Tomas Babak; Wen Zhang; Timothy R Hughes; Derek van der Kooy; Brendan J Frey; Benjamin J Blencowe
Functional coordination of alternative splicing in the mammalian central nervous system.
Genome biology 2007;8(6):R108.
2006: Qun Pan; Arneet L Saltzman; Yoon Ki Kim; Christine M Misquitta; Ofer Shai; Lynne E Maquat; Brendan J Frey; Benjamin J Blencowe
Quantitative microarray profiling provides evidence against widespread coupling of alternative splicing with nonsense-mediated mRNA decay to control gene expression.
Genes & development 2006;20(2):153-8.
2005: Brendan J Frey; Naveed Mohammad; Quaid Morris; Wen Zhang; Mark D Robinson; Sanie Mnaimneh; Richard Chang; Qun Pan; Eric Sat; Janet Rossant; Benoit G Bruneau; Jane E Aubin; Benjamin J Blencowe; Timothy R Hughes
Genome-wide analysis of mouse transcripts using exon microarrays and factor graphs.
Nature genetics 2005;37(9):991-6.
2005: Qun Pan; Malina A Bakowski; Quaid Morris; Wen Zhang; Brendan J Frey; Timothy R Hughes; Benjamin J Blencowe
Alternative splicing of conserved exons is frequently species-specific in human and mouse.
Trends in genetics : TIG 2005;21(2):73-7.
2004: Qun Pan; Ofer Shai; Christine M Misquitta; Wen Zhang; Arneet L Saltzman; Naveed Mohammad; Tomas Babak; Henry Siu; Timothy R Hughes; Quaid Morris; Brendan J Frey; Benjamin J Blencowe
Revealing global regulatory features of mammalian alternative splicing using a quantitative microarray platform.
Molecular cell 2004;16(6):929-41.
2004: Wen Zhang; Quaid Morris; Richard Chang; Ofer Shai; Malina A Bakowski; Nicholas Mitsakakis; Naveed Mohammad; Mark D Robinson; Ralph Zirngibl; Eszter Somogyi; Nancy Laurin; Eftekhar Eftekharpour; Eric Sat; Jörg Grigull; Qun Pan; Wen-Tao Peng; Nevan J Krogan; Jack Greenblatt; Michael G Fehlings; Derek van der Kooy; Jane E Aubin; Benoit G Bruneau; Janet Rossant; Benjamin J Blencowe; Brendan J Frey; Timothy R Hughes
The functional landscape of mouse gene expression.
Journal of biology 2004;3(5):21.