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Laxmi Parida

Research Profile

Physiology

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Evolution, Molecular

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Genes & Molecular Sequences

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Publications

TOP 3
Filippo Utro; Marc Pybus; Laxmi Parida
Sum of parts is greater than the whole: inference of common genetic history of populations.
Asif Javed; Li Jin; Marta Melé; Mihai G Netea; Laxmi Parida; Ramasamy Pitchappan; Marc Pybus; Yajun Yang; Pierre A Zalloua; Ganeshprasad Arunkumar; Elena Balanovska; Oleg Balanovsky; Jaume Bertranpetit; Francesc Calafell; David Comas; Marc Haber
Recombination networks as genetic markers in a human variation study of the Old World.
Filippo Utro; Omar Eduardo Cornejo; Donald Livingstone; Juan Carlos Motamayor; Laxmi Parida
ARG-based genome-wide analysis of cacao cultivars.

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All Publications

2013: Filippo Utro; Marc Pybus; Laxmi Parida
Sum of parts is greater than the whole: inference of common genetic history of populations.
BMC genomics 2013;14 Suppl 1():S10.
2012: Asif Javed; Li Jin; Marta Melé; Mihai G Netea; Laxmi Parida; Ramasamy Pitchappan; Marc Pybus; Yajun Yang; Pierre A Zalloua; Ganeshprasad Arunkumar; Elena Balanovska; Oleg Balanovsky; Jaume Bertranpetit; Francesc Calafell; David Comas; Marc Haber
Recombination networks as genetic markers in a human variation study of the Old World.
Human genetics 2012;131(4):601-13.
2012: Filippo Utro; Omar Eduardo Cornejo; Donald Livingstone; Juan Carlos Motamayor; Laxmi Parida
ARG-based genome-wide analysis of cacao cultivars.
BMC bioinformatics 2012;13 Suppl 19():S17.
2012: Ganeshprasad Arunkumar; Kumaran Samy Ashokan; Kavandanpatti Thangaraj Gandhirajan; Mariakuttikan Jayalakshmi; Valampuri John Kavitha; Muthuswamy Narayanan; Laxmi Parida; Ramasamy Pitchappan; Daniel E Platt; Colin Renfrew; Ajay K Royyuru; Theodore G Schurr; Chris Tyler Smith; David F Soria-Hernanz; Adhikarla Syama; Koothapuli Vijayakumar; R Spencer Wells; Janet S Ziegle; Varatharajan Santhakumari Arun
Population differentiation of southern Indian male lineages correlates with agricultural expansions predating the caste system.
PloS one 2012;7(11):e50269.
2012: Laxmi Parida; Niina Haiminen
Discovering patterns in gene order.
Methods in molecular biology (Clifton, N.J.) 2012;855():431-55.
2012: Laxmi Parida
Nonredundant representation of ancestral recombinations graphs.
Methods in molecular biology (Clifton, N.J.) 2012;856():315-32.
2012: Marta Melé; Mihai G Netea; Laxmi Parida; Ramasamy Pitchappan; Marc Pybus; Yajun Yang; Pierre Zalloua; G Arunkumar; Elena Balanovska; Oleg Balanovsky; Jaume Bertranpetit; Francesc Calafell; David Comas; Marc Haber; Asif Javed; Li Jin
Recombination gives a new insight in the effective population size and the history of the old world human populations.
Molecular biology and evolution 2012;29(1):25-30.
2011: Asif Javed; Marta Melé; Jaume Bertranpetit; Francesc Calafell; Marc Pybus; Filippo Utro; Laxmi Parida
IRiS: construction of ARG networks at genomic scales.
Bioinformatics (Oxford, England) 2011;27(17):2448-50.
2011: Niina Haiminen; David N Kuhn; Laxmi Parida; Isidore Rigoutsos
Evaluation of methods for de novo genome assembly from high-throughput sequencing reads reveals dependencies that affect the quality of the results.
PloS one 2011;6(9):e24182.
2011: F. Alex Feltus; Stephen P Ficklin; James Ford; Niina Haiminen; David N Kuhn; Keithanne Mockaitis; Laxmi Parida; Christopher A Saski; Raymond J Schnell; Zachary Smith; Margaret Staton; Barbara P Blackmon; Chun-Huai Cheng; Juan-Carlos Motamayor
Sequencing of a QTL-rich region of the Theobroma cacao genome using pooled BACs and the identification of trait specific candidate genes.
BMC genomics 2011;12():379.
2011: Niina Haiminen; F Alex Feltus; Laxmi Parida
Assessing pooled BAC and whole genome shotgun strategies for assembly of complex genomes.
BMC genomics 2011;12():194.
2010: Laxmi Parida
Ancestral recombinations graph: a reconstructability perspective using random-graphs framework.
Journal of computational biology : a journal of computational molecular cell biology 2010;17(10):1345-70.
2010: Marta Melé; Asif Javed; Marc Pybus; Francesc Calafell; Laxmi Parida; Jaume Bertranpetit
A new method to reconstruct recombination events at a genomic scale.
PLoS computational biology 2010;6(11):e1001010.
2010: Laxmi Parida; Gene Myers
APBC 2010. The Eighth Asia Pacific Bioinformatics Conference Bangalore, India, 18-21 January 2010.
BMC bioinformatics 2010;11 Suppl 1():I1.
2009: Laxmi Parida; Asif Javed; Marta Melé; Francesc Calafell; Jaume Bertranpetit
Minimizing recombinations in consensus networks for phylogeographic studies.
BMC bioinformatics 2009;10 Suppl 1():S72.
2008: Laxmi Parida; Marta Melé; Francesc Calafell; Jaume Bertranpetit
Estimating the ancestral recombinations graph (ARG) as compatible networks of SNP patterns.
Journal of computational biology : a journal of computational molecular cell biology 2008;15(9):1133-54.
2003: Tien Huynh; Isidore Rigoutsos; Laxmi Parida; Daniel Platt; Tetsuo Shibuya
The web server of IBM's Bioinformatics and Pattern Discovery group.
Nucleic acids research 2003;31(13):3645-50.
2003: Isidore Rigoutsos; Jiri Novotny; Tien Huynh; Stephen T Chin-Bow; Laxmi Parida; Daniel Platt; David Coleman; Thomas Shenk
In silico pattern-based analysis of the human cytomegalovirus genome.
Journal of virology 2003;77(7):4326-44.
2002: Isidore Rigoutsos; Tien Huynh; Aris Floratos; Laxmi Parida; Daniel Platt
Dictionary-driven protein annotation.
Nucleic acids research 2002;30(17):3901-16.
2000: Isidore Rigoutsos; Aris Floratos; Laxmi Parida; Yuan Gao; Daniel Platt
The emergence of pattern discovery techniques in computational biology.
Metabolic engineering 2000;2(3):159-77.
1999: Isidore Rigoutsos; Aris Floratos; Christos Ouzounis; Yuan Gao; Laxmi Parida
Dictionary building via unsupervised hierarchical motif discovery in the sequence space of natural proteins.
Proteins 1999;37(2):264-77.
1999: Isidore Rigoutsos; Yuan Gao; Aris Floratos; Laxmi Parida
Building dictionaries of 1D and 3D motifs by mining the Unaligned 1D sequences of 17 archaeal and bacterial genomes.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 1999;():223-33.