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Dinshaw Patel

This is a preview profile on BiomedExperts - the first literature-based scientific social network. It brings the right researchers together and allows them to collaborate online. Collexis and Dell provide the BiomedExperts network of +1.5 Million pre-calculated profiles free of charge to researchers worldwide.

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Co-Publications
Name
44
Broyde, Suse
32
Geacintov, Nicholas
28
Hingerty, Brian
24
Majumdar, Ananya
23
Gorin, Andrey
19
Phan, Anh Tuân
15
Serganov, Alexander
15
Kettani, A
14
Amin, Shantu
12
Kuryavyi, Vitaly
12
Skripkin, Eugene
11
Malinina, Lucy
10
Li, Haitao
10
Hu, Weidong
10
Al-Hashimi, Hashim

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Publications

TOP 3
Wang Yanli; Juranek Stefan; Li Haitao; Sheng Gang; Wardle Greg S; Tuschl Thomas; Patel Dinshaw J
Nucleation, propagation and cleavage of target RNAs in Ago silencing complexes.
Serganov Alexander; Patel Dinshaw J
Amino acid recognition and gene regulation by riboswitches.
Zhang Na; Ding Shuang; Kolbanovskiy Alexander; Shastry Anant; Kuzmin Vladimir A; Bolton Judy L; Patel Dinshaw J; Broyde Suse; Geacintov Nicholas E
NMR and computational studies of stereoisomeric equine estrogen-derived DNA cytidine adducts in oligonucleotide duplexes: opposite orientations of diastereomeric forms.

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All Publications

2009: Wang Yanli; Juranek Stefan; Li Haitao; Sheng Gang; Wardle Greg S; Tuschl Thomas; Patel Dinshaw J
Nucleation, propagation and cleavage of target RNAs in Ago silencing complexes.
Nature 2009;461(7265):754-61.
2009: Serganov Alexander; Patel Dinshaw J
Amino acid recognition and gene regulation by riboswitches.
Biochimica et biophysica acta 2009;1789(9-10):592-611.
2009: Zhang Na; Ding Shuang; Kolbanovskiy Alexander; Shastry Anant; Kuzmin Vladimir A; Bolton Judy L; Patel Dinshaw J; Broyde Suse; Geacintov Nicholas E
NMR and computational studies of stereoisomeric equine estrogen-derived DNA cytidine adducts in oligonucleotide duplexes: opposite orientations of diastereomeric forms.
Biochemistry 2009;48(30):7098-109.
2009: Westhof Eric; Patel Dinshaw J
Nucleic acids: how high resolution structural biology help us to understand Darwinian evolution.
Current opinion in structural biology 2009;19(3):235-8.
2009: Wang Gang G; Song Jikui; Wang Zhanxin; Dormann Holger L; Casadio Fabio; Li Haitao; Luo Jun-Li; Patel Dinshaw J; Allis C David
Haematopoietic malignancies caused by dysregulation of a chromatin-binding PHD finger.
Nature 2009;459(7248):847-51.
2009: Rechkoblit Olga; Malinina Lucy; Cheng Yuan; Geacintov Nicholas E; Broyde Suse; Patel Dinshaw J
Impact of conformational heterogeneity of OxoG lesions and their pairing partners on bypass fidelity by Y family polymerases.
Structure (London, England : 1993) 2009;17(5):725-36.
2009: Zhai Xiuhong; Malakhova Margarita L; Pike Helen M; Benson Linda M; Bergen H Robert; Sugár István P; Malinina Lucy; Patel Dinshaw J; Brown Rhoderick E
Glycolipid acquisition by human glycolipid transfer protein dramatically alters intrinsic tryptophan fluorescence: insights into glycolipid binding affinity.
The Journal of biological chemistry 2009;284(20):13620-8.
2009: Li Haitao; Motamedi Mohammad R; Yip Calvin K; Wang Zhanxin; Walz Thomas; Patel Dinshaw J; Moazed Danesh
An alpha motif at Tas3 C terminus mediates RITS cis spreading and promotes heterochromatic gene silencing.
Molecular cell 2009;34(2):155-67.
2009: Lim Kah Wai; Amrane Samir; Bouaziz Serge; Xu Weixin; Mu Yuguang; Patel Dinshaw J; Luu Kim Ngoc; Phan Anh Tuân
Structure of the human telomere in K+ solution: a stable basket-type G-quadruplex with only two G-tetrad layers.
Journal of the American Chemical Society 2009;131(12):4301-9.
2009: Zhao Quan; Rank Gerhard; Tan Yuen T; Li Haitao; Moritz Robert L; Simpson Richard J; Cerruti Loretta; Curtis David J; Patel Dinshaw J; Allis C David; Cunningham John M; Jane Stephen M
PRMT5-mediated methylation of histone H4R3 recruits DNMT3A, coupling histone and DNA methylation in gene silencing.
Nature structural & molecular biology 2009;16(3):304-11.
2009: Serganov Alexander; Huang Lili; Patel Dinshaw J
Coenzyme recognition and gene regulation by a flavin mononucleotide riboswitch.
Nature 2009;458(7235):233-7.
2009: Kropachev Konstantin; Kolbanovskii Marina; Cai Yuqin; Rodríguez Fabian; Kolbanovskii Alexander; Liu Yang; Zhang Lu; Amin Shantu; Patel Dinshaw; Broyde Suse; Geacintov Nicholas E
The sequence dependence of human nucleotide excision repair efficiencies of benzo[a]pyrene-derived DNA lesions: insights into the structural factors that favor dual incisions.
Journal of molecular biology 2009;386(5):1193-203.
2009: Xiao Andrew; Li Haitao; Shechter David; Ahn Sung Hee; Fabrizio Laura A; Erdjument-Bromage Hediye; Ishibe-Murakami Satoko; Wang Bin; Tempst Paul; Hofmann Kay; Patel Dinshaw J; Elledge Stephen J; Allis C David
WSTF regulates the H2A.X DNA damage response via a novel tyrosine kinase activity.
Nature 2009;457(7225):57-62.
2009: Cai Yuqin; Patel Dinshaw J; Geacintov Nicholas E; Broyde Suse
Differential nucleotide excision repair susceptibility of bulky DNA adducts in different sequence contexts: hierarchies of recognition signals.
Journal of molecular biology 2009;385(1):30-44.
2009: Pikovskaya Olga; Serganov Artem A; Polonskaia Ann; Serganov Alexander; Patel Dinshaw J
Preparation and crystallization of riboswitch-ligand complexes.
Methods in molecular biology (Clifton, N.J.) 2009;540():115-28.
2008: Wang Yanli; Juranek Stefan; Li Haitao; Sheng Gang; Tuschl Thomas; Patel Dinshaw J
Structure of an argonaute silencing complex with a seed-containing guide DNA and target RNA duplex.
Nature 2008;456(7224):921-6.
2008: Teplova Marianna; Patel Dinshaw J
Structural insights into RNA recognition by the alternative-splicing regulator muscleblind-like MBNL1.
Nature structural & molecular biology 2008;15(12):1343-51.
2008: Wang Yanli; Sheng Gang; Juranek Stefan; Tuschl Thomas; Patel Dinshaw J
Structure of the guide-strand-containing argonaute silencing complex.
Nature 2008;456(7219):209-13.
2008: Serganov Alexander; Huang Lili; Patel Dinshaw J
Structural insights into amino acid binding and gene control by a lysine riboswitch.
Nature 2008;455(7217):1263-7.
2008: Broyde Suse; Wang Lihua; Rechkoblit Olga; Geacintov Nicholas E; Patel Dinshaw J
Lesion processing: high-fidelity versus lesion-bypass DNA polymerases.
Trends in biochemical sciences 2008;33(5):209-19.
2008: Serganov Alexander; Patel Dinshaw J
Towards deciphering the principles underlying an mRNA recognition code.
Current opinion in structural biology 2008;18(1):120-9.
2008: Broyde Suse; Wang Lihua; Zhang Ling; Rechkoblit Olga; Geacintov Nicholas E; Patel Dinshaw J
DNA adduct structure-function relationships: comparing solution with polymerase structures.
Chemical research in toxicology 2008;21(1):45-52.
2008: Patel Dinshaw J
Structural biology of riboswitch-mediated gene regulation and argonaute-mediated gene silencing.
Nucleic acids symposium series (2004) 2008;(52):1.
2007: Ruthenburg Alexander J; Li Haitao; Patel Dinshaw J; Allis C David
Multivalent engagement of chromatin modifications by linked binding modules.
Nature reviews. Molecular cell biology 2007;8(12):983-94.
2007: Li Haitao; Fischle Wolfgang; Wang Wooikoon; Duncan Elizabeth M; Liang Lena; Murakami-Ishibe Satoko; Allis C David; Patel Dinshaw J
Structural basis for lower lysine methylation state-specific readout by MBT repeats of L3MBTL1 and an engineered PHD finger.
Molecular cell 2007;28(4):677-91.
2007: Taverna Sean D; Li Haitao; Ruthenburg Alexander J; Allis C David; Patel Dinshaw J
How chromatin-binding modules interpret histone modifications: lessons from professional pocket pickers.
Nature structural & molecular biology 2007;14(11):1025-40.
2007: Cai Yuqin; Patel Dinshaw J; Geacintov Nicholas E; Broyde Suse
Dynamics of a benzo[a]pyrene-derived guanine DNA lesion in TGT and CGC sequence contexts: enhanced mobility in TGT explains conformational heterogeneity, flexible bending, and greater susceptibility to nucleotide excision repair.
Journal of molecular biology 2007;374(2):292-305.
2007: Serganov Alexander; Patel Dinshaw J
Ribozymes, riboswitches and beyond: regulation of gene expression without proteins.
Nature reviews. Genetics 2007;8(10):776-90.
2007: Hermann Thomas; Tereshko Valentina; Skripkin Eugene; Patel Dinshaw J
Apramycin recognition by the human ribosomal decoding site.
Blood cells, molecules & diseases 2007;38(3):193-8.
2007: Phan Anh Tuân; Kuryavyi Vitaly; Burge Sarah; Neidle Stephen; Patel Dinshaw J
Structure of an unprecedented G-quadruplex scaffold in the human c-kit promoter.
Journal of the American Chemical Society 2007;129(14):4386-92.
2007: Patel Dinshaw J; Phan Anh Tuân; Kuryavyi Vitaly
Human telomere, oncogenic promoter and 5'-UTR G-quadruplexes: diverse higher order DNA and RNA targets for cancer therapeutics.
Nucleic acids research 2007;35(22):7429-55.
2007: Phan Anh Tuân; Kuryavyi Vitaly; Luu Kim Ngoc; Patel Dinshaw J
Structure of two intramolecular G-quadruplexes formed by natural human telomere sequences in K+ solution.
Nucleic acids research 2007;35(19):6517-25.
2007: Bailor Maximillian H; Musselman Catherine; Hansen Alexandar L; Gulati Kush; Patel Dinshaw J; Al-Hashimi Hashim M
Characterizing the relative orientation and dynamics of RNA A-form helices using NMR residual dipolar couplings.
Nature protocols 2007;2(6):1536-46.
2007: Rodríguez Fabián A; Cai Yuqin; Lin Chin; Tang Yijin; Kolbanovskiy Alexander; Amin Shantu; Patel Dinshaw J; Broyde Suse; Geacintov Nicholas E
Exocyclic amino groups of flanking guanines govern sequence-dependent adduct conformations and local structural distortions for minor groove-aligned benzo[a]pyrenyl-guanine lesions in a GG mutation hotspot context.
Nucleic acids research 2007;35(5):1555-68.
2006: Zhang Xiuren; Yuan Yu-Ren; Pei Yi; Lin Shih-Shun; Tuschl Thomas; Patel Dinshaw J; Chua Nam-Hai
Cucumber mosaic virus-encoded 2b suppressor inhibits Arabidopsis Argonaute1 cleavage activity to counter plant defense.
Genes & development 2006;20(23):3255-68.
2006: Taverna Sean D; Ilin Serge; Rogers Richard S; Tanny Jason C; Lavender Heather; Li Haitao; Baker Lindsey; Boyle John; Blair Lauren P; Chait Brian T; Patel Dinshaw J; Aitchison John D; Tackett Alan J; Allis C David
Yng1 PHD finger binding to H3 trimethylated at K4 promotes NuA3 HAT activity at K14 of H3 and transcription at a subset of targeted ORFs.
Molecular cell 2006;24(5):785-96.
2006: Malinina Lucy; Malakhova Margarita L; Kanack Alex T; Lu Min; Abagyan Ruben; Brown Rhoderick E; Patel Dinshaw J
The liganding of glycolipid transfer protein is controlled by glycolipid acyl structure.
PLoS biology 2006;4(11):e362.
2006: Yuan Yu-Ren; Pei Yi; Chen Hong-Ying; Tuschl Thomas; Patel Dinshaw J
A potential protein-RNA recognition event along the RISC-loading pathway from the structure of A. aeolicus Argonaute with externally bound siRNA.
Structure (London, England : 1993) 2006;14(10):1557-65.
2006: Luu Kim Ngoc; Phan Anh Tuân; Kuryavyi Vitaly; Lacroix Laurent; Patel Dinshaw J
Structure of the human telomere in K+ solution: an intramolecular (3 + 1) G-quadruplex scaffold.
Journal of the American Chemical Society 2006;128(30):9963-70.
2006: Ruthenburg Alexander J; Wang Wooikoon; Graybosch Daina M; Li Haitao; Allis C David; Patel Dinshaw J; Verdine Gregory L
Histone H3 recognition and presentation by the WDR5 module of the MLL1 complex.
Nature structural & molecular biology 2006;13(8):704-12.
2006: Li Haitao; Ilin Serge; Wang Wooikoon; Duncan Elizabeth M; Wysocka Joanna; Allis C David; Patel Dinshaw J
Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF.
Nature 2006;442(7098):91-5.
2006: Serganov Alexander; Polonskaia Anna; Phan Anh Tuân; Breaker Ronald R; Patel Dinshaw J
Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch.
Nature 2006;441(7097):1167-71.
2006: Phan Anh Tuân; Kuryavyi Vitaly; Patel Dinshaw J
DNA architecture: from G to Z.
Current opinion in structural biology 2006;16(3):288-98.
2006: Wombacher Richard; Keiper Sonja; Suhm Sandra; Serganov Alexander; Patel Dinshaw J; Jäschke Andres
Control of stereoselectivity in an enzymatic reaction by backdoor access.
Angewandte Chemie (International ed. in English) 2006;45(15):2469-72.
2006: Teplova Marianna; Yuan Yu-Ren; Phan Anh Tuân; Malinina Lucy; Ilin Serge; Teplov Alexei; Patel Dinshaw J
Structural basis for recognition and sequestration of UUU(OH) 3' temini of nascent RNA polymerase III transcripts by La, a rheumatic disease autoantigen.
Molecular cell 2006;21(1):75-85.
2006: Rechkoblit Olga; Malinina Lucy; Cheng Yuan; Kuryavyi Vitaly; Broyde Suse; Geacintov Nicholas E; Patel Dinshaw J
Stepwise translocation of Dpo4 polymerase during error-free bypass of an oxoG lesion.
PLoS biology 2006;4(1):e11.
2006: Patel D J; Ma J-B; Yuan Y-R; Ye K; Pei Y; Kuryavyi V; Malinina L; Meister G; Tuschl T
Structural biology of RNA silencing and its functional implications.
Cold Spring Harbor symposia on quantitative biology 2006;71():81-93.
2006: Phan Anh Tuân; Luu Kim Ngoc; Patel Dinshaw J
Different loop arrangements of intramolecular human telomeric (3+1) G-quadruplexes in K+ solution.
Nucleic acids research 2006;34(19):5715-9.
2006: Zhang Ling; Rechkoblit Olga; Wang Lihua; Patel Dinshaw J; Shapiro Robert; Broyde Suse
Mutagenic nucleotide incorporation and hindered translocation by a food carcinogen C8-dG adduct in Sulfolobus solfataricus P2 DNA polymerase IV (Dpo4): modeling and dynamics studies.
Nucleic acids research 2006;34(11):3326-37.
2005: Zhang Na; Phan Anh Tuân; Patel Dinshaw J
(3 + 1) Assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex.
Journal of the American Chemical Society 2005;127(49):17277-85.
2005: Ye Keqiong; Patel Dinshaw J
RNA silencing suppressor p21 of Beet yellows virus forms an RNA binding octameric ring structure.
Structure (London, England : 1993) 2005;13(9):1375-84.
2005: Phan Anh Tuân; Kuryavyi Vitaly; Gaw Hai Yan; Patel Dinshaw J
Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter.
Nature chemical biology 2005;1(3):167-73.
2005: Yuan Yu-Ren; Pei Yi; Ma Jin-Biao; Kuryavyi Vitaly; Zhadina Maria; Meister Gunter; Chen Hong-Ying; Dauter Zbigniew; Tuschl Thomas; Patel Dinshaw J
Crystal structure of A. aeolicus argonaute, a site-specific DNA-guided endoribonuclease, provides insights into RISC-mediated mRNA cleavage.
Molecular cell 2005;19(3):405-19.
2005: Malakhova Margarita L; Malinina Lucy; Pike Helen M; Kanack Alexander T; Patel Dinshaw J; Brown Rhoderick E
Point mutational analysis of the liganding site in human glycolipid transfer protein. Functionality of the complex.
The Journal of biological chemistry 2005;280(28):26312-20.
2005: Pitt Stephen W; Zhang Qi; Patel Dinshaw J; Al-Hashimi Hashim M
Evidence that electrostatic interactions dictate the ligand-induced arrest of RNA global flexibility.
Angewandte Chemie (International ed. in English) 2005;44(22):3412-5.
2005: Ma Jin-Biao; Yuan Yu-Ren; Meister Gunter; Pei Yi; Tuschl Thomas; Patel Dinshaw J
Structural basis for 5'-end-specific recognition of guide RNA by the A. fulgidus Piwi protein.
Nature 2005;434(7033):666-70.
2005: Wang Lihua; Wu Min; Yan S Frank; Patel Dinshaw J; Geacintov Nicholas E; Broyde Suse
Accommodation of a 1S-(-)-benzo[c]phenanthrenyl-N6-dA adduct in the Y-family Dpo4 DNA polymerase active site: structural insights through molecular dynamics simulations.
Chemical research in toxicology 2005;18(3):441-56.
2005: Serganov Alexander; Keiper Sonja; Malinina Lucy; Tereshko Valentina; Skripkin Eugene; Höbartner Claudia; Polonskaia Anna; Phan Anh Tuân; Wombacher Richard; Micura Ronald; Dauter Zbigniew; Jäschke Andres; Patel Dinshaw J
Structural basis for Diels-Alder ribozyme-catalyzed carbon-carbon bond formation.
Nature structural & molecular biology 2005;12(3):218-24.
2005: Zhang Na; Lin Chin; Huang Xuanwei; Kolbanovskiy Aleksandr; Hingerty Brian E; Amin Shantu; Broyde Suse; Geacintov Nicholas E; Patel Dinshaw J
Methylation of cytosine at C5 in a CpG sequence context causes a conformational switch of a benzo[a]pyrene diol epoxide-N2-guanine adduct in DNA from a minor groove alignment to intercalation with base displacement.
Journal of molecular biology 2005;346(4):951-65.
2005: Phan Anh Tuân; Kuryavyi Vitaly; Ma Jin-Biao; Faure Aurélie; Andréola Marie-Line; Patel Dinshaw J
An interlocked dimeric parallel-stranded DNA quadruplex: a potent inhibitor of HIV-1 integrase.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(3):634-9.
2004: Serganov Alexander; Yuan Yu-Ren; Pikovskaya Olga; Polonskaia Anna; Malinina Lucy; Phan Anh Tuân; Hobartner Claudia; Micura Ronald; Breaker Ronald R; Patel Dinshaw J
Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs.
Chemistry & biology 2004;11(12):1729-41.
2004: Cheng Yuan; Patel Dinshaw J
Crystallographic structure of the nuclease domain of 3'hExo, a DEDDh family member, bound to rAMP.
Journal of molecular biology 2004;343(2):305-12.
2004: Cheng Yuan; Sequeira Sonia M; Malinina Lucy; Tereshko Valentina; Söllner Thomas H; Patel Dinshaw J
Crystallographic identification of Ca2+ and Sr2+ coordination sites in synaptotagmin I C2B domain.
Protein science : a publication of the Protein Society 2004;13(10):2665-72.
2004: Wu Min; Yan S Frank; Tan Jian; Patel Dinshaw J; Geacintov Nicholas E; Broyde Suse
Conformational searches elucidate effects of stereochemistry on structures of deoxyadenosine covalently bound to tumorigenic metabolites of benzo[C] phenanthrene.
Frontiers in bioscience : a journal and virtual library 2004;9():2807-18.
2004: Malinina Lucy; Malakhova Margarita L; Teplov Alexei; Brown Rhoderick E; Patel Dinshaw J
Structural basis for glycosphingolipid transfer specificity.
Nature 2004;430(7003):1048-53.
2004: Phan Anh Tuân; Modi Yasha S; Patel Dinshaw J
Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter.
Journal of the American Chemical Society 2004;126(28):8710-6.
2004: Ehresmann Chantal; Ehresmann Bernard; Ennifar Eric; Dumas Philippe; Garber Maria; Mathy Nathalie; Nikulin Alexei; Portier Claude; Patel Dinshaw; Serganov Alexander
Molecular mimicry in translational regulation: the case of ribosomal protein S15.
RNA biology 2004;1(1):66-73.
2004: Ma Jin-Biao; Ye Keqiong; Patel Dinshaw J
Structural basis for overhang-specific small interfering RNA recognition by the PAZ domain.
Nature 2004;429(6989):318-22.
2004: Mathy Nathalie; Pellegrini Olivier; Serganov Alexander; Patel Dinshaw J; Ehresmann Chantal; Portier Claude
Specific recognition of rpsO mRNA and 16S rRNA by Escherichia coli ribosomal protein S15 relies on both mimicry and site differentiation.
Molecular microbiology 2004;52(3):661-75.
2004: Cheng Yuan; Patel Dinshaw J
An efficient system for small protein expression and refolding.
Biochemical and biophysical research communications 2004;317(2):401-5.
2004: Phan Anh Tuân; Modi Yasha S; Patel Dinshaw J
Two-repeat Tetrahymena telomeric d(TGGGGTTGGGGT) Sequence interconverts between asymmetric dimeric G-quadruplexes in solution.
Journal of molecular biology 2004;338(1):93-102.
2004: Pitt Stephen W; Majumdar Ananya; Serganov Alexander; Patel Dinshaw J; Al-Hashimi Hashim M
Argininamide binding arrests global motions in HIV-1 TAR RNA: comparison with Mg2+-induced conformational stabilization.
Journal of molecular biology 2004;338(1):7-16.
2003: Ye Keqiong; Malinina Lucy; Patel Dinshaw J
Recognition of small interfering RNA by a viral suppressor of RNA silencing.
Nature 2003;426(6968):874-8.
2003: Phan Anh Tuân; Patel Dinshaw J
Two-repeat human telomeric d(TAGGGTTAGGGT) sequence forms interconverting parallel and antiparallel G-quadruplexes in solution: distinct topologies, thermodynamic properties, and folding/unfolding kinetics.
Journal of the American Chemical Society 2003;125(49):15021-7.
2003: Wang Wooi Koon; Tereshko Valentina; Boccuni Piernicola; MacGrogan Donal; Nimer Stephen D; Patel Dinshaw J
Malignant brain tumor repeats: a three-leaved propeller architecture with ligand/peptide binding pockets.
Structure (London, England : 1993) 2003;11(7):775-89.
2003: Stelzl Ulrich; Zengel Janice M; Tovbina Marina; Walker Marquis; Nierhaus Knud H; Lindahl Lasse; Patel Dinshaw J
RNA-structural mimicry in Escherichia coli ribosomal protein L4-dependent regulation of the S10 operon.
The Journal of biological chemistry 2003;278(30):28237-45.
2003: Al-Hashimi Hashim M; Pitt Stephen W; Majumdar Ananya; Xu Weijun; Patel Dinshaw J
Mg2+-induced variations in the conformation and dynamics of HIV-1 TAR RNA probed using NMR residual dipolar couplings.
Journal of molecular biology 2003;329(5):867-73.
2003: Serganov Alexander; Polonskaia Ann; Ehresmann Bernard; Ehresmann Chantal; Patel Dinshaw J
Ribosomal protein S15 represses its own translation via adaptation of an rRNA-like fold within its mRNA.
The EMBO journal 2003;22(8):1898-908.
2003: Yan Shixiang; Wu Min; Patel Dinshaw J; Geacintov Nicholas E; Broyde Suse
Simulating structural and thermodynamic properties of carcinogen-damaged DNA.
Biophysical journal 2003;84(4):2137-48.
2003: Tereshko Valentina; Skripkin Eugene; Patel Dinshaw J
Encapsulating streptomycin within a small 40-mer RNA.
Chemistry & biology 2003;10(2):175-87.
2002: Palmer Arthur G; Patel Dinshaw J
Kurt Wüthrich and NMR of biological macromolecules.
Structure (London, England : 1993) 2002;10(12):1603-4.
2002: Ye Keqiong; Serganov Alexander; Hu Weidong; Garber Maria; Patel Dinshaw J
Ribosome-associated factor Y adopts a fold resembling a double-stranded RNA binding domain scaffold.
European journal of biochemistry / FEBS 2002;269(21):5182-91.
2002: Geacintov Nicholas E; Broyde Suse; Buterin Tonko; Naegeli Hanspeter; Wu Min; Yan Shixiang; Patel Dinshaw J
Thermodynamic and structural factors in the removal of bulky DNA adducts by the nucleotide excision repair machinery.
Biopolymers 2002;65(3):202-10.
2002: Phan Anh Tuân; Patel Dinshaw J
Differentiation between unlabeled and very-low-level fully 15N,13C-labeled nucleotides for resonance assignments in nucleic acids.
Journal of biomolecular NMR 2002;23(4):257-62.
2002: Wu Min; Yan Shixiang; Patel Dinshaw J; Geacintov Nicholas E; Broyde Suse
Relating repair susceptibility of carcinogen-damaged DNA with structural distortion and thermodynamic stability.
Nucleic acids research 2002;30(15):3422-32.
2002: Patel Dinshaw J
Structural biology: a molecular propeller.
Nature 2002;417(6891):807-8.
2002: Al-Hashimi Hashim M; Gorin Andrey; Majumdar Ananya; Gosser Yuying; Patel Dinshaw J
Towards structural genomics of RNA: rapid NMR resonance assignment and simultaneous RNA tertiary structure determination using residual dipolar couplings.
Journal of molecular biology 2002;318(3):637-49.
2002: Phan Anh Tuân; Patel Dinshaw J
A site-specific low-enrichment (15)N,(13)C isotope-labeling approach to unambiguous NMR spectral assignments in nucleic acids.
Journal of the American Chemical Society 2002;124(7):1160-1.
2002: Al-Hashimi Hashim M; Patel Dinshaw J
Residual dipolar couplings: synergy between NMR and structural genomics.
Journal of biomolecular NMR 2002;22(1):1-8.
2002: Majumdar Ananya; Patel Dinshaw J
Identifying hydrogen bond alignments in multistranded DNA architectures by NMR.
Accounts of chemical research 2002;35(1):1-11.
2002: Al-Hashimi Hashim M; Gosser Yuying; Gorin Andrey; Hu Weidong; Majumdar Ananya; Patel Dinshaw J
Concerted motions in HIV-1 TAR RNA may allow access to bound state conformations: RNA dynamics from NMR residual dipolar couplings.
Journal of molecular biology 2002;315(2):95-102.
2001: Majumdar A; Gosser Y; Patel D J
1H-1H correlations across N-H...N hydrogen bonds in nucleic acids.
Journal of biomolecular NMR 2001;21(4):289-306.
2001: Wu M; Yan S; Patel D J; Geacintov N E; Broyde S
Cyclohexene ring and Fjord region twist inversion in stereoisomeric DNA adducts of enantiomeric benzo[c]phenanthrene diol epoxides.
Chemical research in toxicology 2001;14(12):1629-42.
2001: Nonin-Lecomte S; Lin C H; Patel D J
Additional hydrogen bonds and base-pair kinetics in the symmetrical AMP-DNA aptamer complex.
Biophysical journal 2001;81(6):3422-31.
2001: Zhang N; Gorin A; Majumdar A; Kettani A; Chernichenko N; Skripkin E; Patel D J
Dimeric DNA quadruplex containing major groove-aligned A-T-A-T and G-C-G-C tetrads stabilized by inter-subunit Watson-Crick A-T and G-C pairs.
Journal of molecular biology 2001;312(5):1073-88.
2001: Subramaniam G; Paz M M; Suresh Kumar G; Das A; Palom Y; Clement C C; Patel D J; Tomasz M
Solution structure of a guanine-N7-linked complex of the mitomycin C metabolite 2,7-diaminomitosene and DNA. Basis of sequence selectivity.
Biochemistry 2001;40(35):10473-84.
2001: Zhang N; Gorin A; Majumdar A; Kettani A; Chernichenko N; Skripkin E; Patel D J
V-shaped scaffold: a new architectural motif identified in an A x (G x G x G x G) pentad-containing dimeric DNA quadruplex involving stacked G(anti) x G(anti) x G(anti) x G(syn) tetrads.
Journal of molecular biology 2001;311(5):1063-79.
2001: Hu W; Gosser Y Q; Xu W; Patel D J
Novel 2D and 3D multiple-quantum bi-directional HCNCH experiments for the correlation of ribose and base protons/carbons in 13C/15N labeled RNA.
Journal of biomolecular NMR 2001;20(2):167-72.
2001: Kuryavyi V; Majumdar A; Shallop A; Chernichenko N; Skripkin E; Jones R; Patel D J
A double chain reversal loop and two diagonal loops define the architecture of a unimolecular DNA quadruplex containing a pair of stacked G(syn)-G(syn)-G(anti)-G(anti) tetrads flanked by a G-(T-T) Triad and a T-T-T triple.
Journal of molecular biology 2001;310(1):181-94.
2001: Al-Hashimi H M; Tolman J R; Majumdar A; Gorin A; Patel D J
Determining stoichiometry in homomultimeric nucleic acid complexes using magnetic field induced residual dipolar couplings.
Journal of the American Chemical Society 2001;123(24):5806-7.
2001: Al-Hashimi H M; Gorin A; Majumdar A; Patel D J
Alignment of the HTLV-I Rex peptide bound to its target RNA aptamer from magnetic field-induced residual dipolar couplings and intermolecular hydrogen bonds.
Journal of the American Chemical Society 2001;123(13):3179-80.
2001: Lin C H; Huang X; Kolbanovskii A; Hingerty B E; Amin S; Broyde S; Geacintov N E; Patel D J
Molecular topology of polycyclic aromatic carcinogens determines DNA adduct conformation: a link to tumorigenic activity.
Journal of molecular biology 2001;306(5):1059-80.
2001: Majumdar A; Kettani A; Skripkin E; Patel D J
Pulse sequences for detection of NH2...N hydrogen bonds in sheared G . A mismatches via remote, non-exchangeable protons.
Journal of biomolecular NMR 2001;19(2):103-13.
2001: Gosser Y; Hermann T; Majumdar A; Hu W; Frederick R; Jiang F; Xu W; Patel D J
Peptide-triggered conformational switch in HIV-1 RRE RNA complexes.
Nature structural biology 2001;8(2):146-50.
2001: Al-Hashimi H M; Majumdar A; Gorin A; Kettani A; Skripkin E; Patel D J
Field- and phage-induced dipolar couplings in a homodimeric DNA quadruplex: relative orientation of G.(C-A) triad and G-tetrad motifs and direct determination of C2 symmetry axis orientation.
Journal of the American Chemical Society 2001;123(4):633-40.
2000: Shimotakahara S; Gorin A; Kolbanovskiy A; Kettani A; Hingerty B E; Amin S; Broyde S; Geacintov N; Patel D J
Accomodation of S-cis-tamoxifen-N(2)-guanine adduct within a bent and widened DNA minor groove.
Journal of molecular biology 2000;302(2):377-93.
2000: Liu A; Hu W; Majumdar A; Rosen M K; Patel D J
NMR detection of side chain-side chain hydrogen bonding interactions in 13C/15N-labeled proteins.
Journal of biomolecular NMR 2000;17(4):305-10.
2000: Kettani A; Basu G; Gorin A; Majumdar A; Skripkin E; Patel D J
A two-stranded template-based approach to G.(C-A) triad formation: designing novel structural elements into an existing DNA framework.
Journal of molecular biology 2000;301(1):129-46.
2000: Liu A; Hu W; Majumdar A; Rosen M K; Patel D J
Detection of very weak side chain-main chain hydrogen bonding interactions in medium-size 13C/15N-labeled proteins by sensitivity-enhanced NMR spectroscopy.
Journal of biomolecular NMR 2000;17(1):79-82.
2000: Patel D J; Suri A K
Structure, recognition and discrimination in RNA aptamer complexes with cofactors, amino acids, drugs and aminoglycoside antibiotics.
Journal of biotechnology 2000;74(1):39-60.
2000: Hermann T; Patel D J
RNA bulges as architectural and recognition motifs.
Structure (London, England : 1993) 2000;8(3):R47-54.
2000: Kettani A; Gorin A; Majumdar A; Hermann T; Skripkin E; Zhao H; Jones R; Patel D J
A dimeric DNA interface stabilized by stacked A.(G.G.G.G).A hexads and coordinated monovalent cations.
Journal of molecular biology 2000;297(3):627-44.
2000: Hermann T; Patel D J
Adaptive recognition by nucleic acid aptamers.
Science (New York, N.Y.) 2000;287(5454):820-5.
2000: Kuryavyi V; Kettani A; Wang W; Jones R; Patel D J
A diamond-shaped zipper-like DNA architecture containing triads sandwiched between mismatches and tetrads.
Journal of molecular biology 2000;295(3):455-69.
1999: Jiang F; Gorin A; Hu W; Majumdar A; Baskerville S; Xu W; Ellington A; Patel D J
Anchoring an extended HTLV-1 Rex peptide within an RNA major groove containing junctional base triples.
Structure (London, England : 1993) 1999;7(12):1461-72.
1999: Hermann T; Patel D J
Stitching together RNA tertiary architectures.
Journal of molecular biology 1999;294(4):829-49.
1999: Majumdar A; Kettani A; Skripkin E; Patel D J
Observation of internucleotide NH...N hydrogen bonds in the absence of directly detectable protons.
Journal of biomolecular NMR 1999;15(3):207-11.
1999: Suri A K; Mao B; Amin S; Geacintov N E; Patel D J
Solution conformation of the (+)-trans-anti-benzo[g]chrysene-dA adduct opposite dT in a DNA duplex.
Journal of molecular biology 1999;292(2):289-307.
1999: Ye X; Gorin A; Frederick R; Hu W; Majumdar A; Xu W; McLendon G; Ellington A; Patel D J
RNA architecture dictates the conformations of a bound peptide.
Chemistry & biology 1999;6(9):657-69.
1999: Gu Z; Gorin A; Hingerty B E; Broyde S; Patel D J
Solution structures of aminofluorene [AF]-stacked conformers of the syn [AF]-C8-dG adduct positioned opposite dC or dA at a template-primer junction.
Biochemistry 1999;38(33):10855-70.
1999: Gu Z; Gorin A; Krishnasamy R; Hingerty B E; Basu A K; Broyde S; Patel D J
Solution structure of the N-(deoxyguanosin-8-yl)-1-aminopyrene ([AP]dG) adduct opposite dA in a DNA duplex.
Biochemistry 1999;38(33):10843-54.
1999: Mao B; Gu Z; Gorin A; Chen J; Hingerty B E; Amin S; Broyde S; Geacintov N E; Patel D J
Solution structure of the (+)-cis-anti-benzo[a]pyrene-dA ([BP]dA) adduct opposite dT in a DNA duplex.
Biochemistry 1999;38(33):10831-42.
1999: Jiang L; Majumdar A; Hu W; Jaishree T J; Xu W; Patel D J
Saccharide-RNA recognition in a complex formed between neomycin B and an RNA aptamer.
Structure (London, England : 1993) 1999;7(7):817-27.
1999: Kettani A; Bouaziz S; Skripkin E; Majumdar A; Wang W; Jones R A; Patel D J
Interlocked mismatch-aligned arrowhead DNA motifs.
Structure (London, England : 1993) 1999;7(7):803-15.
1999: Patel D J
Adaptive recognition in RNA complexes with peptides and protein modules.
Current opinion in structural biology 1999;9(1):74-87.
1998: Lin C H; Wang W; Jones R A; Patel D J
Formation of an amino-acid-binding pocket through adaptive zippering-up of a large DNA hairpin loop.
Chemistry & biology 1998;5(10):555-72.
1998: Bouaziz S; Kettani A; Patel D J
A K cation-induced conformational switch within a loop spanning segment of a DNA quadruplex containing G-G-G-C repeats.
Journal of molecular biology 1998;282(3):637-52.
1998: Kettani A; Bouaziz S; Gorin A; Zhao H; Jones R A; Patel D J
Solution structure of a Na cation stabilized DNA quadruplex containing G.G.G.G and G.C.G.C tetrads formed by G-G-G-C repeats observed in adeno-associated viral DNA.
Journal of molecular biology 1998;282(3):619-36.
1998: Jiang L; Patel D J
Solution structure of the tobramycin-RNA aptamer complex.
Nature structural biology 1998;5(9):769-74.
1998: Patel D J; Mao B; Gu Z; Hingerty B E; Gorin A; Basu A K; Broyde S
Nuclear magnetic resonance solution structures of covalent aromatic amine-DNA adducts and their mutagenic relevance.
Chemical research in toxicology 1998;11(5):391-407.
1998: Cai Z; Gorin A; Frederick R; Ye X; Hu W; Majumdar A; Kettani A; Patel D J
Solution structure of P22 transcriptional antitermination N peptide-boxB RNA complex.
Nature structural biology 1998;5(3):203-12.
1998: Mao B; Hingerty B E; Broyde S; Patel D J
Solution structure of the aminofluorene [AF]-external conformer of the anti-[AF]-C8-dG adduct opposite dC in a DNA duplex.
Biochemistry 1998;37(1):95-106.
1998: Mao B; Hingerty B E; Broyde S; Patel D J
Solution structure of the aminofluorene [AF]-intercalated conformer of the syn-[AF]-C8-dG adduct opposite dC in a DNA duplex.
Biochemistry 1998;37(1):81-94.
1998: Patel D J
Molecular insights into the RNA world.
Biopolymers 1998;48(2-3):97-100.
1997: Mao B; Gu Z; Gorin A; Hingerty B E; Broyde S; Patel D J
Solution structure of the aminofluorene-stacked conformer of the syn [AF]-C8-dG adduct positioned at a template-primer junction.
Biochemistry 1997;36(47):14491-501.
1997: Mao B; Gorin A; Gu Z; Hingerty B E; Broyde S; Patel D J
Solution structure of the aminofluorene-intercalated conformer of the syn [AF]-C8-dG adduct opposite a--2 deletion site in the NarI hot spot sequence context.
Biochemistry 1997;36(47):14479-90.
1997: Lin C H; Patel D J
Structural basis of DNA folding and recognition in an AMP-DNA aptamer complex: distinct architectures but common recognition motifs for DNA and RNA aptamers complexed to AMP.
Chemistry & biology 1997;4(11):817-32.
1997: Feng B; Gorin A; Kolbanovskiy A; Hingerty B E; Geacintov N E; Broyde S; Patel D J
Solution conformation of the (-)-trans-anti-[BP]dG adduct opposite a deletion site in a DNA duplex: intercalation of the covalently attached benzo[a]pyrene into the helix with base displacement of the modified deoxyguanosine into the minor groove.
Biochemistry 1997;36(45):13780-90.
1997: Feng B; Gorin A; Hingerty B E; Geacintov N E; Broyde S; Patel D J
Structural alignment of the (+)-trans-anti-benzo[a]pyrene-dG adduct positioned opposite dC at a DNA template-primer junction.
Biochemistry 1997;36(45):13769-79.
1997: Patel D J; Suri A K; Jiang F; Jiang L; Fan P; Kumar R A; Nonin S
Structure, recognition and adaptive binding in RNA aptamer complexes.
Journal of molecular biology 1997;272(5):645-64.
1997: Akke M; Fiala R; Jiang F; Patel D; Palmer A G
Base dynamics in a UUCG tetraloop RNA hairpin characterized by 15N spin relaxation: correlations with structure and stability.
RNA (New York, N.Y.) 1997;3(7):702-9.
1997: Patel D J
Structural analysis of nucleic acid aptamers.
Current opinion in chemical biology 1997;1(1):32-46.
1997: Westhof E; Patel D J
Nucleic acids. From self-assembly to induced-fit recognition.
Current opinion in structural biology 1997;7(3):305-9.
1997: Nonin S; Jiang F; Patel D J
Imino proton exchange and base-pair kinetics in the AMP-RNA aptamer complex.
Journal of molecular biology 1997;268(2):359-74.
1997: Kettani A; Bouaziz S; Wang W; Jones R A; Patel D J
Bombyx mori single repeat telomeric DNA sequence forms a G-quadruplex capped by base triads.
Nature structural biology 1997;4(5):382-9.
1997: Geacintov N E; Cosman M; Hingerty B E; Amin S; Broyde S; Patel D J
NMR solution structures of stereoisometric covalent polycyclic aromatic carcinogen-DNA adduct: principles, patterns, and diversity.
Chemical research in toxicology 1997;10(2):111-46.
1997: Jiang F; Patel D J; Zhang X; Zhao H; Jones R A
Specific labeling approaches to guanine and adenine imino and amino proton assignments in the AMP-RNA aptamer complex.
Journal of biomolecular NMR 1997;9(1):55-62.
1997: Jiang L; Suri A K; Fiala R; Patel D J
Saccharide-RNA recognition in an aminoglycoside antibiotic-RNA aptamer complex.
Chemistry & biology 1997;4(1):35-50.
1997: Kumar R A; Ikemoto N; Patel D J
Solution structure of the calicheamicin gamma 1I-DNA complex.
Journal of molecular biology 1997;265(2):187-201.
1997: Kumar R A; Ikemoto N; Patel D J
Solution structure of the esperamicin A1-DNA complex.
Journal of molecular biology 1997;265(2):173-86.
1996: Lin C H; Patel D J
Encapsulating an amino acid in a DNA fold.
Nature structural biology 1996;3(12):1046-50.
1996: Ye X; Gorin A; Ellington A D; Patel D J
Deep penetration of an alpha-helix into a widened RNA major groove in the HIV-1 rev peptide-RNA aptamer complex.
Nature structural biology 1996;3(12):1026-33.
1996: Cullinan D; Korobka A; Grollman A P; Patel D J; Eisenberg M; de los Santos C
NMR solution structure of an oligodeoxynucleotide duplex containing the exocyclic lesion 3,N4-etheno-2'-deoxycytidine opposite thymidine: comparison with the duplex containing deoxyadenosine opposite the adduct.
Biochemistry 1996;35(41):13319-27.
1996: Korobka A; Cullinan D; Cosman M; Grollman A P; Patel D J; Eisenberg M; de los Santos C
Solution structure of an oligodeoxynucleotide duplex containing the exocyclic lesion 3,N4-etheno-2'-deoxycytidine opposite 2'-deoxyadenosine, determined by NMR spectroscopy and restrained molecular dynamics.
Biochemistry 1996;35(41):13310-8.
1996: Jiang F; Fiala R; Live D; Kumar R A; Patel D J
RNA folding topology and intermolecular contacts in the AMP-RNA aptamer complex.
Biochemistry 1996;35(40):13250-66.
1996: Mao B; Vyas R R; Hingerty B E; Broyde S; Basu A K; Patel D J
Solution conformation of the N-(deoxyguanosin-8-yl)-1-aminopyrene ([AP]dG) adduct opposite dC in a DNA duplex.
Biochemistry 1996;35(39):12659-70.
1996: Qian Y Q; Patel D; Hartl F U; McColl D J
Nuclear magnetic resonance solution structure of the human Hsp40 (HDJ-1) J-domain.
Journal of molecular biology 1996;260(2):224-35.
1996: Cosman M; Hingerty B E; Luneva N; Amin S; Geacintov N E; Broyde S; Patel D J
Solution conformation of the (-)-cis-anti-benzo[a]pyrenyl-dG adduct opposite dC in a DNA duplex: intercalation of the covalently attached BP ring into the helix with base displacement of the modified deoxyguanosine into the major groove.
Biochemistry 1996;35(30):9850-63.
1996: Jiang F; Kumar R A; Jones R A; Patel D J
Structural basis of RNA folding and recognition in an AMP-RNA aptamer complex.
Nature 1996;382(6587):183-6.
1996: Greenbaum N L; Radhakrishnan I; Patel D J; Hirsh D
Solution structure of the donor site of a trans-splicing RNA.
Structure (London, England : 1993) 1996;4(6):725-33.
1996: Fan P; Suri A K; Fiala R; Live D; Patel D J
Molecular recognition in the FMN-RNA aptamer complex.
Journal of molecular biology 1996;258(3):480-500.
1996: Chen H; Liu X; Patel D J
DNA bending and unwinding associated with actinomycin D antibiotics bound to partially overlapping sites on DNA.
Journal of molecular biology 1996;258(3):457-79.
1995: Ye X; Kumar R A; Patel D J
Molecular recognition in the bovine immunodeficiency virus Tat peptide-TAR RNA complex.
Chemistry & biology 1995;2(12):827-40.
1995: Mao B; Hingerty B E; Broyde S; Patel D J
Solution conformation of [AF]dG opposite a -2 deletion site in a DNA duplex: intercalation of the covalently attached aminofluorene ring into the helix with base displacement of the C8-modified syn guanine and adjacent unpaired 3'-adenine into the major groove.
Biochemistry 1995;34(51):16641-53.
1995: Kettani A; Kumar R A; Patel D J
Solution structure of a DNA quadruplex containing the fragile X syndrome triplet repeat.
Journal of molecular biology 1995;254(4):638-56.
1995: Cosman M; Hingerty B E; Geacintov N E; Broyde S; Patel D J
Structural alignments of (+)- and (-)-trans-anti-benzo[a]pyrene-dG adducts positioned at a DNA template-primer junction.
Biochemistry 1995;34(46):15334-50.
1995: Ikemoto N; Kumar R A; Ling T T; Ellestad G A; Danishefsky S J; Patel D J
Calicheamicin-DNA complexes: warhead alignment and saccharide recognition of the minor groove.
Proceedings of the National Academy of Sciences of the United States of America 1995;92(23):10506-10.
1995: Sastry M; Fiala R; Patel D J
Solution structure of mithramycin dimers bound to partially overlapping sites on DNA.
Journal of molecular biology 1995;251(5):674-89.
1995: Greenbaum N L; Radhakrishnan I; Hirsh D; Patel D J
Determination of the folding topology of the SL1 RNA from Caenorhabditis elegans by multidimensional heteronuclear NMR.
Journal of molecular biology 1995;252(3):314-27.
1995: Wang Y; Patel D J
Solution structure of the Oxytricha telomeric repeat d[G4(T4G4)3] G-tetraplex.
Journal of molecular biology 1995;251(1):76-94.
1995: Cosman M; Xu R; Hingerty B E; Amin S; Harvey R G; Geacintov N E; Broyde S; Patel D J
Solution conformation of the (-)-trans-anti-5-methylchrysene-dG adduct opposite dC in a DNA duplex: DNA bending associated with wedging of the methyl group of 5-methylchrysene to the 3'-side of the modification site.
Biochemistry 1995;34(18):6247-60.
1995: Mao B; Cosman M; Hingerty B E; Broyde S; Patel D J
Solution conformation of [AF]dG opposite a -1 deletion site in a DNA duplex: intercalation of the covalently attached aminofluorene ring into the helix with base displacement of the C8-modified Syn guanine into the major groove.
Biochemistry 1995;34(18):6226-38.
1995: Lin C H; Patel D J
Solution structure of the covalent duocarmycin A-DNA duplex complex.
Journal of molecular biology 1995;248(1):162-79.
1995: Wang Y; Patel D J
Bulge defects in intramolecular pyrimidine.purine.pyrimidine DNA triplexes in solution.
Biochemistry 1995;34(16):5696-704.
1995: Patel D J; Gumbiner B M
Cell-cell recognition. Zipping together a cell adhesion interface.
Nature 1995;374(6520):306-7.
1995: Sastry M; Fiala R; Lipman R; Tomasz M; Patel D J
Solution structure of the monoalkylated mitomycin C-DNA complex.
Journal of molecular biology 1995;247(2):338-59.
1995: Chen H; Patel D J
Solution structure of a quinomycin bisintercalator-DNA complex.
Journal of molecular biology 1995;246(1):164-79.
1995: Cosman M; Laryea A; Fiala R; Hingerty B E; Amin S; Geacintov N E; Broyde S; Patel D J
Solution conformation of the (-)-trans-anti-benzo[c]phenanthrene-dA ([BPh]dA) adduct opposite dT in a DNA duplex: intercalation of the covalently attached benzo[c]phenanthrenyl ring to the 3'-side of the adduct site and comparison with the (+)-trans-anti-[BPh]dA opposite dT stereoisomer.
Biochemistry 1995;34(4):1295-307.
1994: Wang Y; Patel D J
Solution structure of the Tetrahymena telomeric repeat d(T2G4)4 G-tetraplex.
Structure (London, England : 1993) 1994;2(12):1141-56.
1994: Wang Y; Patel D J
Solution structure of the d(T-C-G-A) duplex at acidic pH. A parallel-stranded helix containing C+ .C, G.G and A.A pairs.
Journal of molecular biology 1994;242(4):508-26.
1994: Cosman M; Fiala R; Hingerty B E; Amin S; Geacintov N E; Broyde S; Patel D J
Solution conformation of the (+)-cis-anti-[BP]dG adduct opposite a deletion site in a DNA duplex: intercalation of the covalently attached benzo[a]pyrene into the helix with base displacement of the modified deoxyguanosine into the minor groove.
Biochemistry 1994;33(38):11518-27.
1994: Cosman M; Fiala R; Hingerty B E; Amin S; Geacintov N E; Broyde S; Patel D J
Solution conformation of the (+)-trans-anti-[BP]dG adduct opposite a deletion site in a DNA duplex: intercalation of the covalently attached benzo[a]pyrene into the helix with base displacement of the modified deoxyguanosine into the major groove.
Biochemistry 1994;33(38):11507-17.
1994: Radhakrishnan I; Patel D J
DNA triplexes: solution structures, hydration sites, energetics, interactions, and function.
Biochemistry 1994;33(38):11405-16.
1994: Radhakrishnan I; Patel D J
Solution structure and hydration patterns of a pyrimidine.purine.pyrimidine DNA triplex containing a novel T.CG base-triple.
Journal of molecular biology 1994;241(4):600-19.
1994: Patel D J
Glycoprotein hormones. A clasped embrace.
Nature 1994;369(6480):438-9.
1994: Radhakrishnan I; Patel D J
Hydration sites in purine.purine.pyrimidine and pyrimidine.purine.pyrimidine DNA triplexes in aqueous solution.
Structure (London, England : 1993) 1994;2(5):395-405.
1994: Patel D J
Protein-nucleic-acid interaction. A molecular handshake.
Nature 1994;367(6465):688-90.
1994: Radhakrishnan I; Patel D J
Solution structure of a pyrimidine.purine.pyrimidine DNA triplex containing T.AT, C+.GC and G.TA triples.
Structure (London, England : 1993) 1994;2(1):17-32.
1993: Wang Y; Patel D J
Solution structure of a parallel-stranded G-quadruplex DNA.
Journal of molecular biology 1993;234(4):1171-83.
1993: Wang Y; Patel D J
Solution structure of the human telomeric repeat d[AG3(T2AG3)3] G-tetraplex.
Structure (London, England : 1993) 1993;1(4):263-82.
1993: Cosman M; Fiala R; Hingerty B E; Laryea A; Lee H; Harvey R G; Amin S; Geacintov N E; Broyde S; Patel D
Solution conformation of the (+)-trans-anti-[BPh]dA adduct opposite dT in a DNA duplex: intercalation of the covalently attached benzo[c]phenanthrene to the 5'-side of the adduct site without disruption of the modified base pair.
Biochemistry 1993;32(46):12488-97.
1993: Radhakrishnan I; de los Santos C; Patel D J
Nuclear magnetic resonance structural studies of A.AT base triple alignments in intramolecular purine.purine.pyrimidine DNA triplexes in solution.
Journal of molecular biology 1993;234(1):188-97.
1993: Patel D J
Nucleic acid recognition. Marriage of convenience.
Nature 1993;365(6446):490-2.
1993: Radhakrishnan I; Patel D J; Priestly E S; Nash H M; Dervan P B
NMR structural studies on a nonnatural deoxyribonucleoside which mediates recognition of GC base pairs in pyrimidine-purine-pyrimidine DNA triplexes.
Biochemistry 1993;32(41):11228-34.
1993: Radhakrishnan I; Patel D J
Solution structure of a purine.purine.pyrimidine DNA triplex containing G.GC and T.AT triples.
Structure (London, England : 1993) 1993;1(2):135-52.
1993: Sastry M; Patel D J
Solution structure of the mithramycin dimer-DNA complex.
Biochemistry 1993;32(26):6588-604.
1993: Rosen M A; Patel D J
Structural features of a three-stranded DNA junction containing a C-C junctional bulge.
Biochemistry 1993;32(26):6576-87.
1993: Rosen M A; Patel D J
Conformational differences between bulged pyrimidines (C-C) and purines (A-A, I-I) at the branch point of three-stranded DNA junctions.
Biochemistry 1993;32(26):6563-75.
1993: Patel D J
Nucleic acid architecture. Tetrads through interdigitation.
Nature 1993;363(6429):499-500.
1993: Cosman M; de los Santos C; Fiala R; Hingerty B E; Ibanez V; Luna E; Harvey R; Geacintov N E; Broyde S; Patel D J
Solution conformation of the (+)-cis-anti-[BP]dG adduct in a DNA duplex: intercalation of the covalently attached benzo[a]pyrenyl ring into the helix and displacement of the modified deoxyguanosine.
Biochemistry 1993;32(16):4145-55.
1993: Huang P; Patel D J; Eisenberg M
Solution structure of the exocyclic 1,N2-propanodeoxyguanosine adduct opposite deoxyadenosine in a DNA nonamer duplex at pH 8.9. model of pH-dependent conformational transition.
Biochemistry 1993;32(15):3852-66.
1993: van Houte L P; van Garderen C J; Patel D J
The antitumor drug nogalamycin forms two different intercalation complexes with d(GCGT).d(ACGC).
Biochemistry 1993;32(6):1667-74.
1992: Gopalakrishnan S; Liu X; Patel D J
Solution structure of the covalent sterigmatocystin-DNA adduct.
Biochemistry 1992;31(44):10790-801.
1992: Wang Y; Patel D J
Guanine residues in d(T2AG3) and d(T2G4) form parallel-stranded potassium cation stabilized G-quadruplexes with anti glycosidic torsion angles in solution.
Biochemistry 1992;31(35):8112-9.
1992: de los Santos C; Cosman M; Hingerty B E; Ibanez V; Margulis L A; Geacintov N E; Broyde S; Patel D J
Influence of benzo[a]pyrene diol epoxide chirality on solution conformations of DNA covalent adducts: the (-)-trans-anti-[BP]G.C adduct structure and comparison with the (+)-trans-anti-[BP]G.C enantiomer.
Biochemistry 1992;31(23):5245-52.
1992: Rosen M A; Shapiro L; Patel D J
Solution structure of a trinucleotide A-T-A bulge loop within a DNA duplex.
Biochemistry 1992;31(16):4015-26.
1992: Rosen M A; Live D; Patel D J
Comparative NMR study of A(n)-bulge loops in DNA duplexes: intrahelical stacking of A, A-A, and A-A-A bulge loops.
Biochemistry 1992;31(16):4004-14.
1992: Radhakrishnan I; Patel D J; Gao X
Three-dimensional homonuclear NOESY-TOCSY of an intramolecular pyrimidine.purine.pyrimidine DNA triplex containing a central G.TA triple: nonexchangeable proton assignments and structural implications.
Biochemistry 1992;31(9):2514-23.
1992: Leroy J L; Gao X L; Misra V; Guéron M; Patel D J
Proton exchange in DNA-luzopeptin and DNA-echinomycin bisintercalation complexes: rates and processes of base-pair opening.
Biochemistry 1992;31(5):1407-15.
1992: Gao X L; Mirau P; Patel D J
Structure refinement of the chromomycin dimer-DNA oligomer complex in solution.
Journal of molecular biology 1992;223(1):259-79.
1991: Wang Y; de los Santos C; Gao X O; Greene K; Live D; Patel D J
Multinuclear nuclear magnetic resonance studies of Na cation-stabilized complex formed by d(G-G-T-T-T-T-C-G-G) in solution. Implications for G-tetrad structures.
Journal of molecular biology 1991;222(3):819-32.
1991: Liu X; Chen H; Patel D J
Solution structure of actinomycin-DNA complexes: drug intercalation at isolated G-C sites.
Journal of biomolecular NMR 1991;1(4):323-47.
1991: Radhakrishnan I; de los Santos C; Patel D J
Nuclear magnetic resonance structural studies of intramolecular purine.purine.pyrimidine DNA triplexes in solution. Base triple pairing alignments and strand direction.
Journal of molecular biology 1991;221(4):1403-18.
1991: Radhakrishnan I; Gao X; de los Santos C; Live D; Patel D J
NMR structural studies of intramolecular (Y+)n.(R+)n(Y-)nDNA triplexes in solution: imino and amino proton and nitrogen markers of G.TA base triple formation.
Biochemistry 1991;30(37):9022-30.
1991: Zagorski M G; Norman D G; Barrow C J; Iwashita T; Tachibana K; Patel D J
Solution structure of pardaxin P-2.
Biochemistry 1991;30(32):8009-17.
1991: Leroy J L; Gao X L; Guéron M; Patel D J
Proton exchange and internal motions in two chromomycin dimer-DNA oligomer complexes.
Biochemistry 1991;30(23):5653-61.
1991: Kouchakdjian M; Eisenberg M; Johnson F; Grollman A P; Patel D J
Structural features of an exocyclic adduct positioned opposite an abasic site in a DNA duplex.
Biochemistry 1991;30(13):3262-70.
1991: Zhang X L; Patel D J
Solution structure of the luzopeptin-DNA complex.
Biochemistry 1991;30(16):4026-41.
1991: de los Santos C; Kouchakdjian M; Yarema K; Basu A; Essigmann J; Patel D J
NMR studies of the exocyclic 1,N6-ethenodeoxyadenosine adduct (epsilon dA) opposite deoxyguanosine in a DNA duplex. Epsilon dA(syn).dG(anti) pairing at the lesion site.
Biochemistry 1991;30(7):1828-35.
1991: Kouchakdjian M; Eisenberg M; Yarema K; Basu A; Essigmann J; Patel D J
NMR studies of the exocyclic 1,N6-ethenodeoxyadenosine adduct (epsilon dA) opposite thymidine in a DNA duplex. Nonplanar alignment of epsilon dA(anti) and dT(anti) at the lesion site.
Biochemistry 1991;30(7):1820-8.
1991: Kouchakdjian M; Bodepudi V; Shibutani S; Eisenberg M; Johnson F; Grollman A P; Patel D J
NMR structural studies of the ionizing radiation adduct 7-hydro-8-oxodeoxyguanosine (8-oxo-7H-dG) opposite deoxyadenosine in a DNA duplex. 8-Oxo-7H-dG(syn).dA(anti) alignment at lesion site.
Biochemistry 1991;30(5):1403-12.
1991: Ashcroft J; Live D H; Patel D J; Cowburn D
Heteronuclear two-dimensional 15N- and 13C-NMR studies of DNA oligomers and their netropsin complexes using indirect proton detection.
Biopolymers 1991;31(1):45-55.
1990: Gao X L; Patel D J
Chromomycin dimer-DNA oligomer complexes. Sequence selectivity and divalent cation specificity.
Biochemistry 1990;29(49):10940-56.
1990: Zhang X L; Patel D J
Solution structure of the nogalamycin-DNA complex.
Biochemistry 1990;29(40):9451-66.
1990: Kouchakdjian M; Eisenberg M; Live D; Marinelli E; Grollman A P; Patel D J
NMR studies of an exocyclic 1,N2-propanodeoxyguanosine adduct (X) located opposite deoxyadenosine (A) in DNA duplexes at basic pH: simultaneous partial intercalation of X and A between stacked bases.
Biochemistry 1990;29(18):4456-65.
1990: Norman D; Live D; Sastry M; Lipman R; Hingerty B E; Tomasz M; Broyde S; Patel D J
NMR and computational characterization of mitomycin cross-linked to adjacent deoxyguanosines in the minor groove of the d(T-A-C-G-T-A).d(T-A-C-G-T-A) duplex.
Biochemistry 1990;29(11):2861-75.
1990: Kalnik M W; Norman D G; Li B F; Swann P F; Patel D J
Conformational transitions in thymidine bulge-containing deoxytridecanucleotide duplexes. Role of flanking sequence and temperature in modulating the equilibrium between looped out and stacked thymidine bulge states.
The Journal of biological chemistry 1990;265(2):636-47.
1989: Zagorski M G; Bowie J U; Vershon A K; Sauer R T; Patel D J
NMR studies of Arc repressor mutants: proton assignments, secondary structure, and long-range contacts for the thermostable proline-8----leucine variant of Arc.
Biochemistry 1989;28(25):9813-25.
1989: Norman D; Abuaf P; Hingerty B E; Live D; Grunberger D; Broyde S; Patel D J
NMR and computational characterization of the N-(deoxyguanosin-8-yl)aminofluorene adduct [(AF)G] opposite adenosine in DNA: (AF)G[syn].A[anti] pair formation and its pH dependence.
Biochemistry 1989;28(18):7462-76.
1989: Kalnik M W; Li B F; Swann P F; Patel D J
O6-ethylguanine carcinogenic lesions in DNA: an NMR study of O6etG.C pairing in dodecanucleotide duplexes.
Biochemistry 1989;28(15):6182-92.
1989: Kalnik M W; Li B F; Swann P F; Patel D J
O6-ethylguanine carcinogenic lesions in DNA: an NMR study of O6etG.T pairing in dodecanucleotide duplexes.
Biochemistry 1989;28(15):6170-81.
1989: Gao X L; Patel D J
Antitumour drug-DNA interactions: NMR studies of echinomycin and chromomycin complexes.
Quarterly reviews of biophysics 1989;22(2):93-138.
1989: Kalnik M W; Chang C N; Johnson F; Grollman A P; Patel D J
NMR studies of abasic sites in DNA duplexes: deoxyadenosine stacks into the helix opposite acyclic lesions.
Biochemistry 1989;28(8):3373-83.
1989: Kalnik M W; Norman D G; Swann P F; Patel D J
Conformation of adenosine bulge-containing deoxytridecanucleotide duplexes in solution. Extra adenosine stacks into duplex independent of flanking sequence and temperature.
The Journal of biological chemistry 1989;264(7):3702-12.
1989: Gao X L; Patel D J
Solution structure of the chromomycin-DNA complex.
Biochemistry 1989;28(2):751-62.
1989: Kalnik M W; Norman D G; Zagorski M G; Swann P F; Patel D J
Conformational transitions in cytidine bulge-containing deoxytridecanucleotide duplexes: extra cytidine equilibrates between looped out (low temperature) and stacked (elevated temperature) conformations in solution.
Biochemistry 1989;28(1):294-303.
1988: Kouchakdjian M; Li B F; Swann P F; Patel D J
Pyrimidine.pyrimidine base-pair mismatches in DNA. A nuclear magnetic resonance study of T.T pairing at neutral pH and C.C pairing at acidic pH in dodecanucleotide duplexes.
Journal of molecular biology 1988;202(1):139-55.
1988: Gao X L; Patel D J
NMR studies of echinomycin bisintercalation complexes with d(A1-C2-G3-T4) and d(T1-C2-G3-A4) duplexes in aqueous solution: sequence-dependent formation of Hoogsteen A1.T4 and Watson--Crick T1.A4 base pairs flanking the bisintercalation site.
Biochemistry 1988;27(5):1744-51.
1988: Kalnik M W; Chang C N; Grollman A P; Patel D J
NMR studies of abasic sites in DNA duplexes: deoxyadenosine stacks into the helix opposite the cyclic analogue of 2-deoxyribose.
Biochemistry 1988;27(3):924-31.
1988: Kalnik M W; Kouchakdjian M; Li B F; Swann P F; Patel D J
Base pair mismatches and carcinogen-modified bases in DNA: an NMR study of G.T and G.O4meT pairing in dodecanucleotide duplexes.
Biochemistry 1988;27(1):108-15.
1988: Kalnik M W; Kouchakdjian M; Li B F; Swann P F; Patel D J
Base pair mismatches and carcinogen-modified bases in DNA: an NMR study of A.C and A.O4meT pairing in dodecanucleotide duplexes.
Biochemistry 1988;27(1):100-8.
1987: Gao X L; Patel D J
NMR studies of A.C mismatches in DNA dodecanucleotides at acidic pH. Wobble A(anti).C(anti) pair formation.
The Journal of biological chemistry 1987;262(35):16973-84.
1987: Patel D J; Shapiro L; Hare D
DNA and RNA: NMR studies of conformations and dynamics in solution.
Quarterly reviews of biophysics 1987;20(1-2):35-112.
1987: Li B F; Swann P F; Kalnik M; Patel D J
Synthesis and structural studies by nuclear magnetic resonance of dodecadeoxynucleotides containing O6-methylguanine, O6-ethylguanine and O4-methylthymine.
IARC scientific publications 1987;(84):44-8.
1987: Patel D J; Shapiro L; Hare D
Nuclear magnetic resonance and distance geometry studies of DNA structures in solution.
Annual review of biophysics and biophysical chemistry 1987;16():423-54.
1986: Hare D; Shapiro L; Patel D J
Extrahelical adenosine stacks into right-handed DNA: solution conformation of the d(C-G-C-A-G-A-G-C-T-C-G-C-G) duplex deduced from distance geometry analysis of nuclear Overhauser effect spectra.
Biochemistry 1986;25(23):7456-64.
1986: Hare D; Shapiro L; Patel D J
Wobble dG X dT pairing in right-handed DNA: solution conformation of the d(C-G-T-G-A-A-T-T-C-G-C-G) duplex deduced from distance geometry analysis of nuclear Overhauser effect spectra.
Biochemistry 1986;25(23):7445-56.
1986: Patel D J; Shapiro L; Hare D
Sequence-dependent conformations of DNA duplexes: the TATA segment of the d(G-G-T-A-T-A-C-C) duplex in aqueous solution.
Biopolymers 1986;25(4):693-706.
1986: Patel D J; Shapiro L; Kozlowski S A; Gaffney B L; Jones R A
Covalent carcinogenic O6-methylguanosine lesions in DNA. Structural studies of the O6 meG X A and O6meG X G interactions in dodecanucleotide duplexes.
Journal of molecular biology 1986;188(4):677-92.
1986: Patel D J; Shapiro L
Sequence-dependent recognition of DNA duplexes: netropsin complexation to the TATA site of the d(G-G-T-A-T-A-C-C) duplex in aqueous solution.
Biopolymers 1986;25(4):707-27.
1986: Patel D J; Shapiro L; Kozlowski S A; Gaffney B L; Jones R A
Structural studies of the O6meG.T interaction in the d(C-G-T-G-A-A-T-T-C-O6meG-C-G) duplex.
Biochemistry 1986;25(5):1036-42.
1986: Patel D J; Shapiro L; Kozlowski S A; Gaffney B L; Jones R A
Structural studies of the O6meG.C interaction in the d(C-G-C-G-A-A-T-T-C-O6meG-C-G) duplex.
Biochemistry 1986;25(5):1027-36.
1986: Patel D J; Shapiro L; Hare D
Sequence-dependent conformation of DNA duplexes. The AATT segment of the d(G-G-A-A-T-T-C-C) duplex in aqueous solution.
The Journal of biological chemistry 1986;261(3):1223-9.
1986: Patel D J; Shapiro L
Sequence-dependent recognition of DNA duplexes. Netropsin complexation to the AATT site of the d(G-G-A-A-T-T-C-C) duplex in aqueous solution.
The Journal of biological chemistry 1986;261(3):1230-40.
1985: Patel D J; Shapiro L; Kozlowski S A; Gaffney B L; Kuzmich S; Jones R A
Covalent carcinogenic lesions in DNA: NMR studies of O6-methylguanosine containing oligonucleotide duplexes.
Biochimie 1985;67(7-8):861-86.
1985: Patel D J; Shapiro L
Molecular recognition in noncovalent antitumor agent-DNA complexes: NMR studies of the base and sequence dependent recognition of the DNA minor groove by netropsin.
Biochimie 1985;67(7-8):887-915.
1985: Patel D J; Kozlowski S A; Weiss M; Bhatt R
Conformation and dynamics of the Pribnow box region of the self-complementary d(C-G-A-T-T-A-T-A-A-T-C-G) duplex in solution.
Biochemistry 1985;24(4):936-44.
1985: Patel D J; Kozlowski S A; Hare D R; Reid B; Ikuta S; Lander N; Itakura K
Conformation, dynamics, and structural transitions of the TATA box region of self-complementary d[(C-G)n-T-A-T-A-(C-G)n] duplexes in solution.
Biochemistry 1985;24(4):926-35.
1984: Weiss M A; Sauer R T; Patel D J; Karplus M
Amino-terminal arm of the lambda repressor: a 1H NMR study.
Biochemistry 1984;23(22):5090-5.
1984: Patel D J; Kozlowski S A; Ikuta S; Itakura K
Dynamics of DNA duplexes containing internal G.T, G.A, A.C, and T.C pairs: hydrogen exchange at and adjacent to mismatch sites.
Federation proceedings 1984;43(11):2663-70.
1984: Patel D J; Kozlowski S A; Ikuta S; Itakura K
Deoxyguanosine-deoxyadenosine pairing in the d(C-G-A-G-A-A-T-T-C-G-C-G) duplex: conformation and dynamics at and adjacent to the dG X dA mismatch site.
Biochemistry 1984;23(14):3207-17.
1984: Patel D J; Kozlowski S A; Ikuta S; Itakura K
Deoxyadenosine-deoxycytidine pairing in the d(C-G-C-G-A-A-T-T-C-A-C-G) duplex: conformation and dynamics at and adjacent to the dA X dC mismatch site.
Biochemistry 1984;23(14):3218-26.
1984: Weiss M A; Patel D J; Sauer R T; Karplus M
1H-NMR study of the lambda operator site OL1: assignment of the imino and adenine H2 resonances.
Nucleic acids research 1984;12(9):4035-47.
1984: Möller A; Nordheim A; Kozlowski S A; Patel D J; Rich A
Bromination stabilizes poly(dG-dC) in the Z-DNA form under low-salt conditions.
Biochemistry 1984;23(1):54-62.
1984: Weiss M A; Patel D J; Sauer R T; Karplus M
Two-dimensional 1H NMR study of the lambda operator site OL1: a sequential assignment strategy and its application.
Proceedings of the National Academy of Sciences of the United States of America 1984;81(1):130-4.
1983: Weiss M A; Karplus M; Patel D J; Sauer R T
Solution NMR studies of intact lambda repressor.
Journal of biomolecular structure & dynamics 1983;1(1):151-7.
1983: Patel D J; Kozlowski S A; Bhatt R
Sequence dependence of base-pair stacking in right-handed DNA in solution: proton nuclear Overhauser effect NMR measurements.
Proceedings of the National Academy of Sciences of the United States of America 1983;80(13):3908-12.
1983: Patel D J; Ikuta S; Kozlowski S; Itakura K
Sequence dependence of hydrogen exchange kinetics in DNA duplexes at the individual base pair level in solution.
Proceedings of the National Academy of Sciences of the United States of America 1983;80(8):2184-8.
1983: Pardi A; Morden K M; Patel D J; Tinoco I
Kinetics for exchange of the imino protons of the d(C-G-C-G-A-A-T-T-C-G-C-G) double helix in complexes with the antibiotics netropsin and/or actinomycin.
Biochemistry 1983;22(5):1107-13.
1983: Patel D J; Kozlowski S A; Ikuta S; Itakura K; Bhatt R; Hare D R
NMR studies of DNA conformation and dynamics in solution.
Cold Spring Harbor symposia on quantitative biology 1983;47 Pt 1():197-206.
1982: Pardi A; Morden K M; Patel D J; Tinoco I
Kinetics for exchange of imino protons in the d(C-G-C-G-A-A-T-T-C-G-C-G) double helix and in two similar helices that contain a G . T base pair, d(C-G-T-G-A-A-T-T-C-G-C-G), and an extra adenine, d(C-G-C-A-G-A-A-T-T-C-G-C-G).
Biochemistry 1982;21(25):6567-74.
1982: Patel D J
Antibiotic-DNA interactions: intermolecular nuclear Overhauser effects in the netropsin-d(C-G-C-G-A-A-T-T-C-G-C-G) complex in solution.
Proceedings of the National Academy of Sciences of the United States of America 1982;79(21):6424-8.
1982: Patel D J; Pardi A; Itakura K
DNA conformation, dynamics, and interactions in solution.
Science (New York, N.Y.) 1982;216(4546):581-90.
1982: Patel D J; Kozlowski S A; Nordheim A; Rich A
Right-handed and left-handed DNA: studies of B- and Z-DNA by using proton nuclear Overhauser effect and P NMR.
Proceedings of the National Academy of Sciences of the United States of America 1982;79(5):1413-7.
1982: Patel D J; Kozlowski S A; Marky L A; Rice J A; Broka C; Itakura K; Breslauer K J
Structure and energetics of a hexanucleotide duplex with stacked trinucleotide ends formed by the sequence d(GAATTCGCG).
Biochemistry 1982;21(3):451-5.
1982: Patel D J; Kozlowski S A; Marky L A; Rice J A; Broka C; Itakura K; Breslauer K J
Extra adenosine stacks into the self-complementary d(CGCAGAATTCGCG) duplex in solution.
Biochemistry 1982;21(3):445-51.
1982: Patel D J; Kozlowski S A; Marky L A; Rice J A; Broka C; Dallas J; Itakura K; Breslauer K J
Structure, dynamics, and energetics of deoxyguanosine . thymidine wobble base pair formation in the self-complementary d(CGTGAATTCGCG) duplex in solution.
Biochemistry 1982;21(3):437-44.
1982: Patel D J; Kozlowski S A; Marky L A; Broka C; Rice J A; Itakura K; Breslauer K J
Premelting and melting transitions in the d(CGCGAATTCGCG) self-complementary duplex in solution.
Biochemistry 1982;21(3):428-36.
1981: Patel D J; Kozlowski S A; Rice J A; Broka C; Itakura K
Mutual interaction between adjacent dG . dC actinomycin binding sites and dA . dT netropsin binding sites on the self-complementary d(C-G-C-G-A-A-T-T-C-G-C-G) duplex in solution.
Proceedings of the National Academy of Sciences of the United States of America 1981;78(12):7281-4.
1981: Patel D J; Kozlowski S A; Suggs J W; Cox S D
Right-handed alternating DNA conformation: poly(dA-dT) adopts the same dinucleotide repeat with cesium, tetraalkylammonium, and 3 alpha, 5 beta, 17 beta-dipyrrolidinium steroid dimethiodide cations in aqueous solution.
Proceedings of the National Academy of Sciences of the United States of America 1981;78(7):4063-7.
1981: Patel D J; Kozlowski S A; Rice J A
Hydrogen bonding, overlap geometry, and sequence specificity in anthracycline antitumor antibiotic.DNA complexes in solution.
Proceedings of the National Academy of Sciences of the United States of America 1981;78(6):3333-7.
1981: Marky L A; Patel D; Breslauer K J
Effect of tetramethylammonium ion on the helix-to-coil transition of poly(deoxyadenylylthymidine): a nuclear magnetic resonance and calorimetric investigation.
Biochemistry 1981;20(6):1427-31.
1981: Patel D J; Gabbay E J
Nitroaniline diamine.poly(dA-dT) complexes: 1H and 19F NMR parameters for full intercalation of aromatic rings into DNA.
Proceedings of the National Academy of Sciences of the United States of America 1981;78(3):1351-5.
1980: Chen D M; Sakai T T; Glickson J D; Patel D J
Bleomycin-A2 complexes with poly(dA--dT): a proton nuclear magnetic resonance study of the nonexchangeable hydrogens.
Biochemical and biophysical research communications 1980;92(1):197-205.
1979: Patel D J
Netropsin . dG-dG-dA-dA-dT-dT-dC-dC complex. Antibiotic binding at adenine . thymine base pairs in the minor groove of the self-complementary octanucleotide duplex.
European journal of biochemistry / FEBS 1979;99(2):369-78.
1979: Patel D J; Canuel L L; Pohl F M
"Alternating B-DNA" conformation for the oligo(dG-dC) duplex in high-salt solution.
Proceedings of the National Academy of Sciences of the United States of America 1979;76(6):2508-11.
1979: Patel D J; Canuel L L
Helix-coil transition of the self-complementary dG-dG-dA-dA-dT-dT-dC-dC duplex.
European journal of biochemistry / FEBS 1979;96(2):267-76.
1979: Patel D J
Helix-coil transition of the dG-dC-dG-dC self-complementary duplex and complex formation with daunomycin in solution.
Biopolymers 1979;18(3):553-69.
1979: Patel D J; Canuel L L
Steroid diamine-nucleic acid interactions: partial insertion of dipyrandium between unstacked base pairs of the poly(dA-dT) duplex in solution.
Proceedings of the National Academy of Sciences of the United States of America 1979;76(1):24-8.
1978: Patel D J; Canuel L L
Anthracycline antitumor antibiotic nucleic-acid interactions. Structural aspects of the daunomycin poly(dA-dT) complex in solution.
European journal of biochemistry / FEBS 1978;90(2):247-54.
1978: Patel D J; Shen C
Sugar pucker geometries at the intercalation site of propidium diiodide into miniature RNA and DNA duplexes in solution.
Proceedings of the National Academy of Sciences of the United States of America 1978;75(6):2553-7.
1978: Patel D J
Synthetic RNA and DNA duplexes. Premelting, melting and postmelting transitions of alternating inosine-cytosine polynucleotides in solution.
European journal of biochemistry / FEBS 1978;83(2):453-64.
1977: Patel D J
Mutagen-nucleic acid complexes at the polynucleotide duplex level in solution: intercalation of proflavine into poly(dA-dT) and the melting transition of the complex.
Biopolymers 1977;16(12):2739-54.
1977: Patel D J; Canuel L L
Netropsin-poly(dA-dT) complex in solution: structure and dynamics of antibiotic-free base pair regions and those centered on bound netropsin.
Proceedings of the National Academy of Sciences of the United States of America 1977;74(12):5207-11.
1977: Patel D J
d-CpCpGpG and d-GpGpCpC self-complementary duplexes: Nmr studies of the helix-coil transition.
Biopolymers 1977;16(8):1635-56.
1977: Patel D J; Canuel L L
Sequence specificity of mutagen-nucleic acid complexes in solution: intercalation and mutagen-base pair overlap geometries for proflavine binding to dC-dC-dG-dG and dG-dG-dC-dC self-complementary duplexes.
Proceedings of the National Academy of Sciences of the United States of America 1977;74(7):2624-8.
1977: Patel D J; Canuel L L
Biphasic helix-coil transition of the ethidium bromide-poly (dA-dT) and the propidium diiodide - poly (dA-dT) complexes. Stabilization of base-pair regions centered about the intercalation site.
Biopolymers 1977;16(4):857-73.
1976: Shen C; Patel D J
Free acid, anion, alkali, and alkaline earth complexes of lasalocid a (X537A) in methanol: structural and kinetic studies at the monomer level.
Proceedings of the National Academy of Sciences of the United States of America 1976;73(12):4277-81.
1976: Patel D J; Canuel L L
Ethidium bromide-(dC-dG-dC-dG)2 complex in solution: intercalation and sequence specificity of drug binding at the tetranucleotide duplex level.
Proceedings of the National Academy of Sciences of the United States of America 1976;73(10):3343-7.
1976: Patel D J
NMR studies of the structure and stability of the 1 : 2 actinomycin D-d-pG-C complex in aqueous solution.
Biochimica et biophysica acta 1976;442(1):98-108.
1976: Patel D J; Tonelli A E
N-methylleucine gramicidin-S and (di-N-methylleucine) gramicidin-S conformations with cis L-Orn-L-N-MeLeu peptide bonds.
Biopolymers 1976;15(8):1623-35.
1976: Patel D J; Shen C
Structural and kinetic studies of lasalocid A (X537A) and its silver, sodium, and barium salts in nonpolar solvents.
Proceedings of the National Academy of Sciences of the United States of America 1976;73(6):1786-90.
1976: Patel D J; Canuel L L
Nuclear magnetic resonance studies of slowly exchanging peptide protons in cytochrome c in aqueous solution.
Proceedings of the National Academy of Sciences of the United States of America 1976;73(5):1398-402.
1976: Patel D J
Proton and phosphorus NMR studies of d-CpG(pCpG)n duplexes in solution. Helix-coil transition and complex formation with actinomycin-D.
Biopolymers 1976;15(3):533-58.
1976: Patel D J; Canuel L
Nuclear magnetic resonance studies of the helix-coil transition of poly (dA-dT) in aqueous solution.
Proceedings of the National Academy of Sciences of the United States of America 1976;73(3):674-8.
1976: Nakanishi K; Yudd A P; Crouch R K; Olson G L; Cheung H C; Govindjee R; Ebrey T G; Patel D J
Letter: Allenic retinals and visual pigment analogues.
Journal of the American Chemical Society 1976;98(1):236-8.
1975: Patel D J; Canuel L L; Bovey F A; Woodward C
Assignment of the imidazole ring nitrogen protons of histidine 48 in the proton NMR spectrum of ribonuclease A in water solution.
Biochimica et biophysica acta 1975;400(2):275-82.
1975: Hilbers C W; Patel D J
Proton nuclear magnetic resonance investigations of the nucleation and propagation reactions associated with the helix-coil transition of d-ApTpGpCpApT in H2O solution.
Biochemistry 1975;14(12):2656-60.
1975: Patel D J; Hilbers C W
Proton nuclear magnetic resonance investigations of fraying in double-stranded d-ApTpGpCpApT in H2O solution.
Biochemistry 1975;14(12):2651-6.
1975: Patel D J; Canuel L L; Bovey F A
Reassignment of the active site histidines in ribonuclease A by selective deuteration studies.
Biopolymers 1975;14(5):987-97.
1975: Patel D J; Woodward C; Canuel L L; Bovey F A
Correlation of exchangeable (NH) and nonexchangeable (C2H) histidine resonances in the proton NMR spectrum of ribonuclease A in aqueous solution.
Biopolymers 1975;14(5):975-86.
1975: Patel D J; Canuel L L; Woodward C; Bovey F A
Assignment of the histidine 12-threonine 45 hydrogen-bonded proton in the NMR spectrum of ribonuclease A in H2O.
Biopolymers 1975;14(5):959-74.
1975: Patel D J
The predicted secondary structure of the N-terminal sequence of the lac repressor and proposed models for its complexation to the lac operator.
Biochemistry 1975;14(5):1057-9.
1974: Patel D J
Peptide antibiotic-oligonucleotide interactions. Nuclear magnetic resonance investigations of complex formation between actinomycin D and d-ApTpGpCpApT in aqueous solution.
Biochemistry 1974;13(11):2396-402.
1974: Patel D J
Peptide antibiotic-dinucleotide interactions. Nuclear magnetic resonance investigations of complex formation between actinomycin D and d-pGpC in aqueous solution.
Biochemistry 1974;13(11):2388-95.
1974: Ogawa S; Patel D J; Simon S R
Proton magnetic resonance study of the switch between the two quaternary structures in high-affinity hemoglobins in the deoxy state.
Biochemistry 1974;13(10):2001-6.
1974: Patel D J; Tonelli A E
Proton nuclear magnetic resonance investigations and ring current calculations of guanine N-1 and thymine N-3 hydrogen-bonded protons in double-helical deoxyribonucleotides in aqueous solution.
Proceedings of the National Academy of Sciences of the United States of America 1974;71(5):1945-8.
1974: Patel D J
Peptide antibiotic-nucleotide interactions. Nuclear magnetic resonance investigations of complex formation between actinomycin d and deoxyguanosine 5'-monophosphate in aqueous solution.
Biochemistry 1974;13(7):1476-82.
1974: Patel D J; Tonelli A E
A comparison of the solution and crystal conformations for the alkali metal ion complex of antamanide.
Biochemistry 1974;13(4):788-92.
1974: Patel D J; Tonelli A E
Assignment of the proton Nmr chemical shifts of the T-N3H and G-N1H proton resonances in isolated AT and GC Watson-Crick base pairs in double-stranded deoxy oligonucleotides in aqueous solution.
Biopolymers 1974;13(10):1943-64.
1973: Patel D J; Tonelli A E; Pfaender P; Faulstich H; Wieland T
Experimental and calculated conformational characteristics of the bicyclic heptapeptide phalloidin.
Journal of molecular biology 1973;79(1):185-96.
1973: Patel D J
Conformation of antamanide-sodium in solution.
Biochemistry 1973;12(4):677-88.
1973: Patel D J
Antamanide conformations in nonaqueous media. Dependence on hydrogen-bond acceptor properties of solvent.
Biochemistry 1973;12(4):667-76.
1973: Patel D J
Carbon framework of valinomycin and its metal ion complex in solution.
Biochemistry 1973;12(3):496-501.
1973: Patel D J; Tonelli A E
Solvent-dependent conformations of valinomycin in solution.
Biochemistry 1973;12(3):486-96.
1972: Patel D J; Woodward C K; Bovey F A
Proton nuclear magnetic resonance studies of ribonuclease A in H 2 O.
Proceedings of the National Academy of Sciences of the United States of America 1972;69(3):599-602.
1971: Tonelli A E; Patel D J; Goodman M; Naider F; Faulstich H; Wieland T
Experimental and calculated conformational characteristics of the cyclic decapeptide antamanide.
Biochemistry 1971;10(17):3211-7.
1971: Kearns D R; Patel D J; Shulman R G
High resolution nuclear magnetic resonance studies of hydrogen bonded protons of tRNA in water.
Nature 1971;229(5283):338-9.
1970: Patel D J; Kampa L; Shulman R G; Yamane T; Wyluda B J
Proton nuclear magnetic resonance studies of myoglobin in H2O.
Proceedings of the National Academy of Sciences of the United States of America 1970;67(3):1109-15.
1970: Shulman R G; Wüthrich K; Yamane T; Patel D J; Blumberg W E
Nuclear magnetic resonance determination of ligand-induced conformational changes in myoglobin.
Journal of molecular biology 1970;53(1):143-57.
1970: Patel D J; Kampa L; Shulman R G; Yamane T; Fujiwara M
Proton NMR studies of hemoglobin in H2O.
Biochemical and biophysical research communications 1970;40(5):1224-30.
1970: Patel D J; Shulman R G
Spin delocalization in retinals.
Proceedings of the National Academy of Sciences of the United States of America 1970;65(1):31-8.
1969: Patel D J
Charge delocalization in the prosthetic group of visual pigments.
Nature 1969;224(5221):799-800.
1969: Patel D J
220 MHz proton nuclear magnetic resonance spectra of retinals.
Nature 1969;221(5183):825-8.
1969: Patel D J
220 MHz proton magnetic resonance spectrum of NADH.
Nature 1969;221(5187):1239-41.
1966: Patel D J; Bafna S L
Separation of coumarins.
Nature 1966;211(5052):963.

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