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Andrew Paterson

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Fan Zhang; Andrew H Paterson; Jian-Long Xu; SB Yu; Jauhar Ali; Bin-Ying Fu; Yong-Ming Gao; Yun-Zhu Jiang; Gurdev S Khush; R Lafitte; Zhi-Kang Li
Three genetic systems controlling growth, development and productivity of rice (Oryza sativa L.): a reevaluation of the 'Green Revolution'.
Yupeng Wang; Xiyin Wang; Tae-Ho Lee; Shahid Mansoor; Andrew H Paterson
Gene body methylation shows distinct patterns associated with different gene origins and duplication modes and has a heterogeneous relationship with gene expression in Oryza sativa (rice).
Dong Zhang; Jon Robertson; Xiyin Wang; Zining Wang; Hui Guo; Changsoo Kim; Tae-Ho Lee; Jingping Li; Andrew H Paterson
CSGRqtl, a comparative quantitative trait locus database for Saccharinae grasses.

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All Publications

2013: Fan Zhang; Andrew H Paterson; Jian-Long Xu; SB Yu; Jauhar Ali; Bin-Ying Fu; Yong-Ming Gao; Yun-Zhu Jiang; Gurdev S Khush; R Lafitte; Zhi-Kang Li
Three genetic systems controlling growth, development and productivity of rice (Oryza sativa L.): a reevaluation of the 'Green Revolution'.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2013;126(4):1011-24.
2013: Yupeng Wang; Xiyin Wang; Tae-Ho Lee; Shahid Mansoor; Andrew H Paterson
Gene body methylation shows distinct patterns associated with different gene origins and duplication modes and has a heterogeneous relationship with gene expression in Oryza sativa (rice).
The New phytologist 2013;198(1):274-83.
2013: Dong Zhang; Jon Robertson; Xiyin Wang; Zining Wang; Hui Guo; Changsoo Kim; Tae-Ho Lee; Jingping Li; Andrew H Paterson
CSGRqtl, a comparative quantitative trait locus database for Saccharinae grasses.
Plant physiology 2013;161(2):594-9.
2013: Wenqian Kong; Lisa K Rainville; Mukesh K Rana; Charles Woodfin; Susan A Auckland; Rajib Bandopadhyay; John J Burke; Gloria B Burow; Cleve D Franks; Valorie H Goff; Huizhe Jin; Changsoo Kim; Andrew H Paterson
Genetic analysis of recombinant inbred lines for Sorghum bicolor × Sorghum propinquum.
G3 (Bethesda, Md.) 2013;3(1):101-8.
2013: Tae-Ho Lee; Haibao Tang; Xiyin Wang; Andrew H Paterson
PGDD: a database of gene and genome duplication in plants.
Nucleic acids research 2013;41(Database issue):D1152-8.
2013: Changsoo Kim; Tae-Ho Lee; Gary J Pierce; Jon S Robertson; Rosana O Compton; Andrew H Paterson
A genome-wide BAC end-sequence survey of sugarcane elucidates genome composition, and identifies BACs covering much of the euchromatin.
Plant molecular biology 2013;81(1-2):139-47.
2012: Shahid Mansoor; Andrew H Paterson
Genomes for jeans: cotton genomics for engineering superior fiber.
Trends in biotechnology 2012;30(10):521-7.
2012: Lei Gong; Kara K Grupp; Andrew H Paterson; Armel Salmon; Zining Wang; Mi-Jeong Yoo; Jonathan F Wendel
The cytonuclear dimension of allopolyploid evolution: an example from cotton using rubisco.
Molecular biology and evolution 2012;29(10):3023-36.
2012: Jianping Wang; Ming-Li Wang; Qingyi Yu; Fanchang Zeng; Wenli Zhang; Ching Man Wai; Maqsudul Alam; Rishi Aryal; Deborah Charlesworth; Cuixia Chen; F. Alex Feltus; Andrea R Gschwend; Jennifer Han; Jiming Jiang; Cornelia Lemke; Xiang Jia Min; Paul H Moore; Jan E Murray; Jong-Kuk Na; Rafael Navajas-Pérez; Andrew H Paterson; Ratnesh Singh; Eric J Tong; Robert VanBuren; Ray Ming
Sequencing papaya X and Yh chromosomes reveals molecular basis of incipient sex chromosome evolution.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(34):13710-5.
2012: Andrea R Gschwend; Jennifer Han; Rishi Aryal; Deborah Charlesworth; Paul H Moore; Andrew H Paterson; Eric J Tong; Robert VanBuren; Qingyi Yu; Fanchang Zeng; Ray Ming
Rapid divergence and expansion of the X chromosome in papaya.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(34):13716-21.
2012: J Rong; Stefan R Schulze; X Wang; T D Williams-Coplin; P W Chee; R O Compton; V Goff; Andrew H Paterson
Types, levels and patterns of low-copy DNA sequence divergence, and phylogenetic implications, for Gossypium genome types.
Heredity 2012;108(5):500-6.
2012: Changsoo Kim; Brent Kronmiller; Susan A Auckland; Martin Deuter; Katrin Jakob; Lisa K Rainville; Erik J Sacks; Dong Zhang; Andrew H Paterson
SSR-based genetic maps of Miscanthus sinensis and M. sacchariflorus, and their comparison to sorghum.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2012;124(7):1325-38.
2012: Yupeng Wang; Xu Tan; Haibao Tang; Xiyin Wang; Jeremy D Debarry; Hui Guo; Huizhe Jin; Jessica Kissinger; Tae-Ho Lee; Jingping Li; Barry Marler; Andrew H Paterson
MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity.
Nucleic acids research 2012;40(7):e49.
2012: J E Phillips; J S Robertson; S W Thor; S M Williams; N D Acevedol; Deborah A Hilt; Mark W Jackwood; Jessica Kissinger; E T McKinley; Andrew H Paterson; Cornelia Lemke
Changes in nonstructural protein 3 are associated with attenuation in avian coronavirus infectious bronchitis virus.
Virus genes 2012;44(1):63-74.
2012: Jong-Kuk Na; Andrew H Paterson; Jianping Wang; Qingyi Yu; Wenli Zhang; Rafael Navajas-Pérez; Cuixia Chen; F. Alex Feltus; Andrea R Gschwend; Jiming Jiang; Zdenek Kubat; Paul H Moore; Jan E Murray; Ray Ming
Construction of physical maps for the sex-specific regions of papaya sex chromosomes.
BMC genomics 2012;13():176.
2011: Zhengsheng Zhang; Junkang Rong; Vijay N Waghmare; Robert J Wright; Peng W Chee; John R Gannaway; O Lloyd May; Andrew H Paterson
QTL alleles for improved fiber quality from a wild Hawaiian cotton, Gossypium tomentosum.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2011;123(7):1075-88.
2011: Milind Ratnaparkhe; Haibao Tang; Xiyin Wang; Lisa K Rainville; Rosana O Compton; Changsoo Kim; Cornelia Lemke; Jingping Li; Andrew H Paterson
Comparative analysis of peanut NBS-LRR gene clusters suggests evolutionary innovation among duplicated domains and erosion of gene microsynteny.
The New phytologist 2011;192(1):164-78.
2011: Sharmi W Thor; Deborah A Hilt; Jessica Kissinger; Andrew H Paterson; Mark W Jackwood
Recombination in avian gamma-coronavirus infectious bronchitis virus.
Viruses 2011;3(9):1777-99.
2011: Changsoo Kim; Jon S Robertson; Andrew H Paterson
Inference of subgenomic origin of BACs in an interspecific hybrid sugarcane cultivar by overlapping oligonucleotide hybridizations.
Genome / National Research Council Canada = Génome / Conseil national de recherches Canada 2011;54(9):727-37.
2011: Andrew H Paterson; Zhi-Kang Li
Paleo-Green Revolution for rice.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(27):10931-2.
2011: Qingyi Yu; Anne Byers; Alexandre de Kochko; Christine Dubreuil-Tranchant; Romain Guyot; Brennick J Langston; Chifumi Nagai; Rafael Navajas-Pérez; Andrew H Paterson; Valérie Poncet; Ray Ming
Micro-collinearity and genome evolution in the vicinity of an ethylene receptor gene of cultivated diploid and allotetraploid coffee species (Coffea).
The Plant journal : for cell and molecular biology 2011;67(2):305-17.
2011: Enid T McKinley; Mark W Jackwood; Deborah A Hilt; Jessica Kissinger; Jon S Robertson; Cornelia Lemke; Andrew H Paterson
Attenuated live vaccine usage affects accurate measures of virus diversity and mutation rates in avian coronavirus infectious bronchitis virus.
Virus research 2011;158(1-2):225-34.
2011: Lifeng Lin; Haibao Tang; Rosana O Compton; Cornelia Lemke; Lisa K Rainville; Xiyin Wang; Junkang Rong; Mukesh Kumar Rana; Andrew H Paterson
Comparative analysis of Gossypium and Vitis genomes indicates genome duplication specific to the Gossypium lineage.
Genomics 2011;97(5):313-20.
2011: Avishag Levi; Andrew H Paterson; Ismail Cakmak; Yehoshua Saranga
Metabolite and mineral analyses of cotton near-isogenic lines introgressed with QTLs for productivity and drought-related traits.
Physiologia plantarum 2011;141(3):265-75.
2011: Xiyin Wang; Yongli Xiao; Bayram Yuksel; Richard M Amasino; John E Bowers; Ethan Epps; Emily Giattina; Jennifer Ingles; Santhosh Karunakaran; Cornelia Lemke; Lifeng Lin; Barry Marler; Jeong-Hwan Mun; Lisa K Nelson; Thomas C Osborn; Beom-Seok Park; Gary Pierce; J Chris Pires; Carlos F Quiros; Carl Rogers; Heidi Sarazen; Young-Joo Seol; Manuel J Torres; Christopher D Town; Andrew H Paterson
A physical map of Brassica oleracea shows complexity of chromosomal changes following recursive paleopolyploidizations.
BMC genomics 2011;12():470.
2011: Fan Zhang; Hu-Qu Zhai; Andrew H Paterson; Jian-Long Xu; Yong-Ming Gao; Tian-Qing Zheng; Rong-Ling Wu; Bin-Ying Fu; Jauhar Ali; Zhi-Kang Li
Dissecting genetic networks underlying complex phenotypes: the theoretical framework.
PloS one 2011;6(1):e14541.
2011: Xiyin Wang; Haibao Tang; Andrew H Paterson
Seventy million years of concerted evolution of a homoeologous chromosome pair, in parallel, in major Poaceae lineages.
The Plant cell 2011;23(1):27-37.
2010: Haibao Tang; Uzay Sezen; Andrew H Paterson
Domestication and plant genomes.
Current opinion in plant biology 2010;13(2):160-6.
2010: Mark W Jackwood; Tye O Boynton; Deborah A Hilt; Enid T McKinley; Jessica Kissinger; Andrew H Paterson; Jon Robertson; Conelia Lemke; Amber W McCall; Susan M Williams; Joshua W Jackwood; Lauren A Byrd
Emergence of a group 3 coronavirus through recombination.
Virology 2010;398(1):98-108.
2010: Haibao Tang; John E Bowers; Xiyin Wang; Andrew H Paterson
Angiosperm genome comparisons reveal early polyploidy in the monocot lineage.
Proceedings of the National Academy of Sciences of the United States of America 2010;107(1):472-7.
2010: Andrew H Paterson; Michael Freeling; Haibao Tang; Xiyin Wang
Insights from the comparison of plant genome sequences.
Annual review of plant biology 2010;61():349-72.
2009: Guojun Li; Qin Ma; Haibao Tang; Andrew H Paterson; Ying Xu
QUBIC: a qualitative biclustering algorithm for analyses of gene expression data.
Nucleic acids research 2009;37(15):e101.
2009: Xiyin Wang; Haibao Tang; John E Bowers; Andrew H Paterson
Comparative inference of illegitimate recombination between rice and sorghum duplicated genes produced by polyploidization.
Genome research 2009;19(6):1026-32.
2009: Rafael Navajas-Pérez; Andrew H Paterson
Patterns of tandem repetition in plant whole genome assemblies.
Molecular genetics and genomics : MGG 2009;281(6):579-90.
2009: Changsoo Kim; Cornelia Lemke; Andrew H Paterson
Functional dissection of drought-responsive gene expression patterns in Cynodon dactylon L.
Plant molecular biology 2009;70(1-2):1-16.
2009: Cheol Seong Jang; T L Kamps; Haibao Tang; John E Bowers; Cornelia Lemke; Andrew H Paterson
Evolutionary fate of rhizome-specific genes in a non-rhizomatous Sorghum genotype.
Heredity 2009;102(3):266-73.
2009: Xiyin Wang; Udo Gowik; Haibao Tang; John E Bowers; Peter Westhoff; Andrew H Paterson
Comparative genomic analysis of C4 photosynthetic pathway evolution in grasses.
Genome biology 2009;10(6):R68.
2009: Andrew H Paterson; John E Bowers; F. Alex Feltus; Haibao Tang; Lifeng Lin; Xiyin Wang
Comparative genomics of grasses promises a bountiful harvest.
Plant physiology 2009;149(1):125-31.
2008: Haibao Tang; Xiyin Wang; John E Bowers; Ray Ming; Maqsudul Alam; Andrew H Paterson
Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps.
Genome research 2008;18(12):1944-54.
2008: Corrinne E Grover; Yeisoo Yu; Rod A Wing; Andrew H Paterson; Jonathan F Wendel
A phylogenetic analysis of indel dynamics in the cotton genus.
Molecular biology and evolution 2008;25(7):1415-28.
2008: Haibao Tang; John E Bowers; Xiyin Wang; Ray Ming; Maqsudul Alam; Andrew H Paterson
Synteny and collinearity in plant genomes.
Science (New York, N.Y.) 2008;320(5875):486-8.
2008: Aparna Desai; Peng W Chee; O Lloyd May; Andrew H Paterson
Correspondence of trichome mutations in diploid and tetraploid cottons.
The Journal of heredity 2008;99(2):182-6.
2008: Christine D Bacon; F Alex Feltus; Andrew H Paterson; C Donovan Bailey
Novel nuclear intron-spanning primers for Arecaceae evolutionary biology.
Molecular ecology resources 2008;8(1):211-4.
2008: Andrew H Paterson
Genomics of sorghum.
International journal of plant genomics 2008;2008():362451.
2008: Qingyi Yu; Shaobin Hou; F. Alex Feltus; Meghan R Jones; Jan E Murray; Olivia Veatch; Cornelia Lemke; Jimmy Saw; Richard C Moore; Jyothi Thimmapuram; Lei Liu; Paul H Moore; Maqsudul Alam; Jiming Jiang; Andrew H Paterson; Ray Ming
Low X/Y divergence in four pairs of papaya sex-linked genes.
The Plant journal : for cell and molecular biology 2008;53(1):124-32.
2007: Xiyin Wang; Haibao Tang; John E Bowers; F. Alex Feltus; Andrew H Paterson
Extensive concerted evolution of rice paralogs and the road to regaining independence.
Genetics 2007;177(3):1753-63.
2007: Junkang Rong; F. Alex Feltus; Vijay N Waghmare; Gary J Pierce; Peng W Chee; Xavier Draye; Yehoshua Saranga; Robert J Wright; Thea A Wilkins; O Lloyd May; C Wayne Smith; John R Gannaway; Jonathan F Wendel; Andrew H Paterson
Meta-analysis of polyploid cotton QTL shows unequal contributions of subgenomes to a complex network of genes and gene clusters implicated in lint fiber development.
Genetics 2007;176(4):2577-88.
2007: Qingyi Yu; Shaobin Hou; Roman Hobza; F. Alex Feltus; Xiue Wang; Weiwei Jin; Rachel L Skelton; Andrea Blas; Cornelia Lemke; Jimmy Saw; Paul H Moore; Maqsudul Alam; Jiming Jiang; Andrew H Paterson; Boris Vyskot; Ray Ming
Chromosomal location and gene paucity of the male specific region on papaya Y chromosome.
Molecular genetics and genomics : MGG 2007;278(2):177-85.
2007: Fusheng Wei; Ed Coe; William Nelson; Arvind K Bharti; Friedrich W Engler; Ed Butler; HyeRan Kim; José L Goicoechea; Mingsheng Chen; Seunghee Lee; Galina Fuks; Hector Sanchez-Villeda; Steven Schroeder; Zhiwei Fang; Michael D McMullen; Georgia Davis; John E Bowers; Andrew H Paterson; Mary Schaeffer; Jack Gardiner; Karen Cone; Joachim Messing; Carol Soderlund; Rod A Wing
Physical and genetic structure of the maize genome reflects its complex evolutionary history.
PLoS genetics 2007;3(7):e123.
2007: H C Lohithaswa; F. Alex Feltus; H P Singh; C D Bacon; C Donovan Bailey; Andrew H Paterson
Leveraging the rice genome sequence for monocot comparative and translational genomics.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2007;115(2):237-43.
2007: Corrinne E Grover; Hyeran Kim; Rod A Wing; Andrew H Paterson; Jonathan F Wendel
Microcolinearity and genome evolution in the AdhA region of diploid and polyploid cotton (Gossypium).
The Plant journal : for cell and molecular biology 2007;50(6):995-1006.
2007: Yuanfu Ji; Xinping Zhao; Andrew H Paterson; H James Price; David M Stelly
Integrative mapping of Gossypium hirsutum L. by meiotic fluorescent in situ hybridization of a tandemly repetitive sequence (B77).
Genetics 2007;176(1):115-23.
2006: Cheol Seong Jang; Terry L Kamps; D Neil Skinner; Stefan R Schulze; William K Vencill; Andrew H Paterson
Functional classification, genomic organization, putatively cis-acting regulatory elements, and relationship to quantitative trait loci, of sorghum genes with rhizome-enriched expression.
Plant physiology 2006;142(3):1148-59.
2006: Andrew H Paterson; Brad A Chapman; Jessica Kissinger; John E Bowers; F. Alex Feltus; James C Estill
Many gene and domain families have convergent fates following independent whole-genome duplication events in Arabidopsis, Oryza, Saccharomyces and Tetraodon.
Trends in genetics : TIG 2006;22(11):597-602.
2006: Martha Hamblin; Alexandra M Casa; Hong Sun; Seth C Murray; Andrew H Paterson; Charles F Aquadro; Stephen Kresovich
Challenges of detecting directional selection after a bottleneck: lessons from Sorghum bicolor.
Genetics 2006;173(2):953-64.
2006: F. Alex Feltus; G E Hart; Keith F Schertz; Alexandra M Casa; Stephen Kresovich; S Abraham; Patricia E Klein; P J Brown; Andrew H Paterson
Alignment of genetic maps and QTLs between inter- and intra-specific sorghum populations.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2006;112(7):1295-305.
2006: Aparna Desai; Peng W Chee; Junkang Rong; O Lloyd May; Andrew H Paterson
Chromosome structural changes in diploid and tetraploid A genomes of Gossypium.
Genome / National Research Council Canada = Génome / Conseil national de recherches Canada 2006;49(4):336-45.
2006: F. Alex Feltus; H P Singh; H C Lohithaswa; Stefan R Schulze; T D Silva; Andrew H Paterson
A comparative genomics strategy for targeted discovery of single-nucleotide polymorphisms and conserved-noncoding sequences in orphan crops.
Plant physiology 2006;140(4):1183-91.
2006: Andrew H Paterson
Leafing through the genomes of our major crop plants: strategies for capturing unique information.
Nature reviews. Genetics 2006;7(3):174-84.
2006: Brad A Chapman; John E Bowers; F. Alex Feltus; Andrew H Paterson
Buffering of crucial functions by paleologous duplicated genes may contribute cyclicality to angiosperm genome duplication.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(8):2730-5.
2006: C M Bethel; E B Sciara; James C Estill; John E Bowers; W Hanna; Andrew H Paterson
A framework linkage map of bermudagrass (Cynodon dactylon x transvaalensis) based on single-dose restriction fragments.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2006;112(4):727-37.
2006: Andrew H Paterson
A cornucopia of genomes.
Genome biology 2006;7(3):311.
2005: Andrew H Paterson; Michael Freeling; Takuji Sasaki
Grains of knowledge: genomics of model cereals.
Genome research 2005;15(12):1643-50.
2005: Martha Hamblin; Maria G Salas Fernandez; Alexandra M Casa; Sharon E Mitchell; Andrew H Paterson; Stephen Kresovich
Equilibrium processes cannot explain high levels of short- and medium-range linkage disequilibrium in the domesticated grass Sorghum bicolor.
Genetics 2005;171(3):1247-56.
2005: Bayram Yuksel; James C Estill; Stefan R Schulze; Andrew H Paterson
Organization and evolution of resistance gene analogs in peanut.
Molecular genetics and genomics : MGG 2005;274(3):248-63.
2005: Lee H Pratt; Chun Liang; Manish Shah; Feng Sun; Haiming Wang; St Patrick Reid; Alan R Gingle; Andrew H Paterson; Rod A Wing; Ralph Dean; Robert Klein; Henry T Nguyen; Hong-Mei Ma; Xin Zhao; Daryl T Morishige; John E Mullet; Marie-Michèle Cordonnier-Pratt
Sorghum expressed sequence tags identify signature genes for drought, pathogenesis, and skotomorphogenesis from a milestone set of 16,801 unique transcripts.
Plant physiology 2005;139(2):869-84.
2005: Junkang Rong; Gary J Pierce; Vijay N Waghmare; Carl J Rogers; Aparna Desai; Peng W Chee; O Lloyd May; John R Gannaway; Jonathan F Wendel; Thea A Wilkins; Andrew H Paterson
Genetic mapping and comparative analysis of seven mutants related to seed fiber development in cotton.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2005;111(6):1137-46.
2005: Junkang Rong; John E Bowers; Stefan R Schulze; Vijay N Waghmare; Carl J Rogers; Gary J Pierce; Hua Zhang; James C Estill; Andrew H Paterson
Comparative genomics of Gossypium and Arabidopsis: unraveling the consequences of both ancient and recent polyploidy.
Genome research 2005;15(9):1198-210.
2005: Vijay N Waghmare; Junkang Rong; Carl J Rogers; Gary J Pierce; Jonathan F Wendel; Andrew H Paterson
Genetic mapping of a cross between Gossypium hirsutum (cotton) and the Hawaiian endemic, Gossypium tomentosum.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2005;111(4):665-76.
2005: Xavier Draye; Peng W Chee; Chun-Xiao Jiang; Laura Decanini; Terrye A Delmonte; Robert Bredhauer; C Wayne Smith; Andrew H Paterson
Molecular dissection of interspecific variation between Gossypium hirsutum and G. barbadense (cotton) by a backcross-self approach: II. Fiber fineness.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2005;111(4):764-71.
2005: Peng W Chee; Xavier Draye; Chun-Xiao Jiang; Laura Decanini; Terrye A Delmonte; Robert Bredhauer; C Wayne Smith; Andrew H Paterson
Molecular dissection of phenotypic variation between Gossypium hirsutum and Gossypium barbadense (cotton) by a backcross-self approach: III. Fiber length.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2005;111(4):772-81.
2005: Peng W Chee; Xavier Draye; Chun-Xiao Jiang; Laura Decanini; Terrye A Delmonte; Robert Bredhauer; C Wayne Smith; Andrew H Paterson
Molecular dissection of interspecific variation between Gossypium hirsutum and Gossypium barbadense (cotton) by a backcross-self approach: I. Fiber elongation.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2005;111(4):757-63.
2005: Peter Morrell; T D Williams-Coplin; A L Lattu; John E Bowers; J M Chandler; Andrew H Paterson
Crop-to-weed introgression has impacted allelic composition of johnsongrass populations with and without recent exposure to cultivated sorghum.
Molecular ecology 2005;14(7):2143-54.
2005: Alexandra M Casa; Sharon E Mitchell; Martha Hamblin; H Sun; John E Bowers; Andrew H Paterson; Charles F Aquadro; Stephen Kresovich
Diversity and selection in sorghum: simultaneous analyses using simple sequence repeats.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2005;111(1):23-30.
2005: B Yüksel; John E Bowers; James C Estill; L Goff; Cornelia Lemke; Andrew H Paterson
Exploratory integration of peanut genetic and physical maps and possible contributions from Arabidopsis.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2005;111(1):87-94.
2005: Andrew H Paterson; John E Bowers; Yves Van de Peer; Klaas Vandepoele
Ancient duplication of cereal genomes.
The New phytologist 2005;165(3):658-61.
2005: Andrew H Paterson
Polyploidy, evolutionary opportunity, and crop adaptation.
Genetica 2005;123(1-2):191-6.
2005: Thomas Wicker; Wolfgang Zimmermann; Dragan Perovic; Andrew H Paterson; Martin Ganal; Andreas Graner; Nils Stein
A detailed look at 7 million years of genome evolution in a 439 kb contiguous sequence at the barley Hv-eIF4E locus: recombination, rearrangements and repeats.
The Plant journal : for cell and molecular biology 2005;41(2):184-94.
2005: Thomas Wicker; Jon S Robertson; Stefan R Schulze; F. Alex Feltus; vincent magrini; Jason A Morrison; Elaine R Mardis; Richard K Wilson; Daniel G Peterson; Andrew H Paterson; Robert Ivarie
The repetitive landscape of the chicken genome.
Genome research 2005;15(1):126-36.
2004: F. Alex Feltus; Jun Wan; Stefan R Schulze; James C Estill; Ning Jiang; Andrew H Paterson
An SNP resource for rice genetics and breeding based on subspecies indica and japonica genome alignments.
Genome research 2004;14(9):1812-9.
2004: Corrinne E Grover; HyeRan Kim; Rod A Wing; Andrew H Paterson; Jonathan F Wendel
Incongruent patterns of local and global genome size evolution in cotton.
Genome research 2004;14(8):1474-82.
2004: Andrew H Paterson; John E Bowers; Brad A Chapman
Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(26):9903-8.
2004: Peng W Chee; Junkang Rong; Dawn Williams-Coplin; Stefan R Schulze; Andrew H Paterson
EST derived PCR-based markers for functional gene homologues in cotton.
Genome / National Research Council Canada = Génome / Conseil national de recherches Canada 2004;47(3):449-62.
2004: Martha Hamblin; Sharon E Mitchell; Gemma M White; Javier Gallego; Rakesh Kukatla; Rod A Wing; Andrew H Paterson; Stephen Kresovich
Comparative population genetics of the panicoid grasses: sequence polymorphism, linkage disequilibrium and selection in a diverse sample of sorghum bicolor.
Genetics 2004;167(1):471-83.
2004: Andrew H Paterson; John E Bowers; Brad A Chapman; Daniel G Peterson; Junkang Rong; Thomas Wicker
Comparative genome analysis of monocots and dicots, toward characterization of angiosperm diversity.
Current opinion in biotechnology 2004;15(2):120-5.
2004: M E Ferguson; M D Burow; Stefan R Schulze; P J Bramel; Andrew H Paterson; Stephen Kresovich; S Mitchell
Microsatellite identification and characterization in peanut ( A. hypogaea L.).
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2004;108(6):1064-70.
2004: T Fukao; Andrew H Paterson; MA Hussey; Y Yamasue; Robert A Kennedy; Mary E Rumpho
Construction of a comparative RFLP map of Echinochloa crus-galli toward QTL analysis of flooding tolerance.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2004;108(6):993-1001.
2004: Zhiyong Liu; Paul H Moore; Hao Ma; Christine M Ackerman; Makandar Ragiba; Qingyi Yu; Heather M Pearl; Minna S Kim; Joseph W Charlton; John I Stiles; Francis T Zee; Andrew H Paterson; Ray Ming
A primitive Y chromosome in papaya marks incipient sex chromosome evolution.
Nature 2004;427(6972):348-52.
2004: Brad A Chapman; John E Bowers; Stefan R Schulze; Andrew H Paterson
A comparative phylogenetic approach for dating whole genome duplication events.
Bioinformatics (Oxford, England) 2004;20(2):180-5.
2004: Hao Ma; Paul H Moore; Zhiyong Liu; Minna S Kim; Qingyi Yu; Maureen M M Fitch; Terry Sekioka; Andrew H Paterson; Ray Ming
High-density linkage mapping revealed suppression of recombination at the sex determination locus in papaya.
Genetics 2004;166(1):419-36.
2004: Junkang Rong; Colette Abbey; John E Bowers; Curt L Brubaker; Charlene Chang; Peng W Chee; Terrye A Delmonte; Xiaoling Ding; Juan J Garza; Barry S Marler; Chan-hwa Park; Gary J Pierce; Katy M Rainey; Vipin K Rastogi; Stefan R Schulze; Norma L Trolinder; Jonathan F Wendel; Thea A Wilkins; T Dawn Williams-Coplin; Rod A Wing; Robert J Wright; Xinping Zhao; Linghua Zhu; Andrew H Paterson
A 3347-locus genetic recombination map of sequence-tagged sites reveals features of genome organization, transmission and evolution of cotton (Gossypium).
Genetics 2004;166(1):389-417.
2003: Andrew H Paterson; John E Bowers; Daniel G Peterson; James C Estill; Brad A Chapman
Structure and evolution of cereal genomes.
Current opinion in genetics & development 2003;13(6):644-50.
2003: John E Bowers; Colette Abbey; Sharon Anderson; Charlene Chang; Xavier Draye; Alison H Hoppe; Russell Jessup; Cornelia Lemke; Jennifer Lennington; Zhikang Li; Yann-Rong Lin; Sin-Chieh Liu; Lijun Luo; Barry S Marler; Ray Ming; Sharon E Mitchell; Dou Qiang; Kim Reischmann; Stefan R Schulze; D Neil Skinner; Yue-Wen Wang; Stephen Kresovich; Keith F Schertz; Andrew H Paterson
A high-density genetic recombination map of sequence-tagged sites for sorghum, as a framework for comparative structural and evolutionary genomics of tropical grains and grasses.
Genetics 2003;165(1):367-86.
2003: Han-Wei Mei; Li-Jun Luo; Cun-Shan Ying; Yi-Ping Wang; Xin-Qiao Yu; Long-Biao Guo; Andrew H Paterson; Zhi-Kang Li
Gene actions of QTLs affecting several agronomic traits resolved in a recombinant inbred rice population and two testcross populations.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2003;107(1):89-101.
2003: R W Jessup; Byron L Burson; O Burow; Y W Wang; C Chang; Z Li; Andrew H Paterson; MA Hussey
Segmental allotetraploidy and allelic interactions in buffelgrass (Pennisetum ciliare (L.) Link syn. Cenchrus ciliaris L.) as revealed by genome mapping.
Genome / National Research Council Canada = Génome / Conseil national de recherches Canada 2003;46(2):304-13.
2003: David S Senchina; Ines Alvarez; Richard Cronn; Bao Liu; Junkang Rong; Richard D Noyes; Andrew H Paterson; Rod A Wing; Thea A Wilkins; Jonathan F Wendel
Rate variation among nuclear genes and the age of polyploidy in Gossypium.
Molecular biology and evolution 2003;20(4):633-43.
2003: Fang Hu; D Y Tao; E Sacks; Bin-Ying Fu; P Xu; J Li; Y Yang; K McNally; Gurdev S Khush; Andrew H Paterson; Zhi-Kang Li
Convergent evolution of perenniality in rice and sorghum.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(7):4050-4.
2003: John E Bowers; Brad A Chapman; Junkang Rong; Andrew H Paterson
Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events.
Nature 2003;422(6930):433-8.
2003: Andrew H Paterson; Yehoshua Saranga; M Menz; Chun-Xiao Jiang; Robert J Wright
QTL analysis of genotype x environment interactions affecting cotton fiber quality.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2003;106(3):384-96.
2002: Karen Cone; Michael D McMullen; Irie Vroh Bi; Georgia L Davis; Young-Sun Yim; Jack M Gardiner; Mary L Polacco; Hector Sanchez-Villeda; Zhiwei Fang; Steve G Schroeder; Seth A Havermann; John E Bowers; Andrew H Paterson; Carol Soderlund; Friedrich W Engler; Rod A Wing; Edward H Coe
Genetic, physical, and informatics resources for maize. On the road to an integrated map.
Plant physiology 2002;130(4):1598-605.
2002: Daniel G Peterson; Susan R Wessler; Andrew H Paterson
Efficient capture of unique sequences from eukaryotic genomes.
Trends in genetics : TIG 2002;18(11):547-50.
2002: Ray Ming; Terrye A Del Monte; Eduardo Hernandez; Paul H Moore; James E Irvine; Andrew H Paterson
Comparative analysis of QTLs affecting plant height and flowering among closely-related diploid and polyploid genomes.
Genome / National Research Council Canada = Génome / Conseil national de recherches Canada 2002;45(5):794-803.
2002: Daniel G Peterson; Stefan R Schulze; Erica B Sciara; Scott A Lee; John E Bowers; Alexander Nagel; Ning Jiang; Deanne Tibbitts; Susan R Wessler; Andrew H Paterson
Integration of Cot analysis, DNA cloning, and high-throughput sequencing facilitates genome characterization and gene discovery.
Genome research 2002;12(5):795-807.
2001: Ray Ming; Sin-Chieh Liu; Paul H Moore; James E Irvine; Andrew H Paterson
QTL analysis in a complex autopolyploid: genetic control of sugar content in sugarcane.
Genome research 2001;11(12):2075-84.
2001: Yehoshua Saranga; M Menz; Chun-Xiao Jiang; Robert J Wright; D Yakir; Andrew H Paterson
Genomic dissection of genotype x environment interactions conferring adaptation of cotton to arid conditions.
Genome research 2001;11(12):1988-95.
2001: Li-Jun Luo; Zhi-Kang Li; Han-Wei Mei; Q Y Shu; R Tabien; DAIBIN ZHONG; Cun-Shan Ying; JW Stansel; Gurdev S Khush; Andrew H Paterson
Overdominant epistatic loci are the primary genetic basis of inbreeding depression and heterosis in rice. II. Grain yield components.
Genetics 2001;158(4):1755-71.
2001: Zhi-Kang Li; Li-Jun Luo; Han-Wei Mei; D L Wang; Q Y Shu; R Tabien; DAIBIN ZHONG; Cun-Shan Ying; JW Stansel; Gurdev S Khush; Andrew H Paterson
Overdominant epistatic loci are the primary genetic basis of inbreeding depression and heterosis in rice. I. Biomass and grain yield.
Genetics 2001;158(4):1737-53.
2001: Xavier Draye; Yann-Rong Lin; X Y Qian; John E Bowers; G B Burow; Peter Morrell; Daniel G Peterson; GG Presting; S X Ren; Rod A Wing; Andrew H Paterson
Toward integration of comparative genetic, physical, diversity, and cytomolecular maps for grasses and grains, using the sorghum genome as a foundation.
Plant physiology 2001;125(3):1325-41.
2000: Andrew H Paterson; John E Bowers; M D Burow; Xavier Draye; C G Elsik; Chun-Xiao Jiang; C S Katsar; T H Lan; Yann-Rong Lin; Ray Ming; R J Wright
Comparative genomics of plant chromosomes.
The Plant cell 2000;12(9):1523-40.
2000: T H Lan; Andrew H Paterson
Comparative mapping of quantitative trait loci sculpting the curd of Brassica oleracea.
Genetics 2000;155(4):1927-54.
2000: Chun-Xiao Jiang; Peng W Chee; Xavier Draye; Peter Morrell; C Wayne Smith; Andrew H Paterson
Multilocus interactions restrict gene introgression in interspecific populations of polyploid Gossypium (cotton).
Evolution; international journal of organic evolution 2000;54(3):798-814.
2000: T H Lan; Terrye A Delmonte; K P Reischmann; J Hyman; S P Kowalski; J McFerson; S Kresovich; Andrew H Paterson
An EST-enriched comparative map of Brassica oleracea and Arabidopsis thaliana.
Genome research 2000;10(6):776-88.
2000: Yann-Rong Lin; Xavier Draye; X Qian; S Ren; L H Zhu; Jeffrey Tomkins; Rod A Wing; Z Li; Andrew H Paterson
Locus-specific contig assembly in highly-duplicated genomes, using the BAC-RF method.
Nucleic acids research 2000;28(7):E23.
1999: Zhi-Kang Li; Li-Jun Luo; Han-Wei Mei; Andrew H Paterson; X H Zhao; DAIBIN ZHONG; Y P Wang; X Q Yu; L Zhu; R Tabien; JW Stansel; Cun-Shan Ying
A "defeated" rice resistance gene acts as a QTL against a virulent strain of Xanthomonas oryzae pv. oryzae.
Molecular & general genetics : MGG 1999;261(1):58-63.
1998: X Zhao; Yuanfu Ji; X Ding; David M Stelly; Andrew H Paterson
Macromolecular organization and genetic mapping of a rapidly evolving chromosome-specific tandem repeat family (B77) in cotton (Gossypium).
Plant molecular biology 1998;38(6):1031-42.
1998: Ray Ming; Sin-Chieh Liu; Yann-Rong Lin; J da Silva; W Wilson; D Braga; A van Deynze; T F Wenslaff; K K Wu; Paul H Moore; W Burnquist; M E Sorrells; James E Irvine; Andrew H Paterson
Detailed alignment of saccharum and sorghum chromosomes: comparative organization of closely related diploid and polyploid genomes.
Genetics 1998;150(4):1663-82.
1998: R J Wright; Peggy Thaxton; K M El-Zik; Andrew H Paterson
D-subgenome bias of Xcm resistance genes in tetraploid Gossypium (cotton) suggests that polyploid formation has created novel avenues for evolution.
Genetics 1998;149(4):1987-96.
1998: X P Zhao; Y Si; RE Hanson; CF Crane; H James Price; David M Stelly; Jonathan F Wendel; Andrew H Paterson
Dispersed repetitive DNA has spread to new genomes since polyploid formation in cotton.
Genome research 1998;8(5):479-92.
1998: C Jiang; R J Wright; K M El-Zik; Andrew H Paterson
Polyploid formation created unique avenues for response to selection in Gossypium (cotton).
Proceedings of the National Academy of Sciences of the United States of America 1998;95(8):4419-24.
1998: Dilbag S Multani; Robert B Meeley; Andrew H Paterson; John Gray; Steven P Briggs; Gurmukh S Johal
Plant-pathogen microevolution: molecular basis for the origin of a fungal disease in maize.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(4):1686-91.
1997: Z Li; S R Pinson; Andrew H Paterson; William D Park; JW Stansel
Genetics of hybrid sterility and hybrid breakdown in an intersubspecific rice (Oryza sativa L.) population.
Genetics 1997;145(4):1139-48.
1997: Z Li; S R Pinson; William D Park; Andrew H Paterson; JW Stansel
Epistasis for three grain yield components in rice (Oryza sativa L.).
Genetics 1997;145(2):453-65.
1996: Richard Cronn; X Zhao; Andrew H Paterson; Jonathan F Wendel
Polymorphism and concerted evolution in a tandemly repeated gene family: 5S ribosomal DNA in diploid and allopolyploid cottons.
Journal of molecular evolution 1996;42(6):685-705.
1996: S C Liu; S P Kowalski; T H Lan; K A Feldmann; Andrew H Paterson
Genome-wide high-resolution mapping by recurrent intermating using Arabidopsis thaliana as a model.
Genetics 1996;142(1):247-58.
1995: X Zhao; Rod A Wing; Andrew H Paterson
Cloning and characterization of the majority of repetitive DNA in cotton (Gossypium L.).
Genome / National Research Council Canada = Génome / Conseil national de recherches Canada 1995;38(6):1177-88.
1995: Andrew H Paterson
Molecular dissection of quantitative traits: progress and prospects.
Genome research 1995;5(4):321-33.
1995: Y R Lin; K F Schertz; Andrew H Paterson
Comparative analysis of QTLs affecting plant height and maturity across the Poaceae, in reference to an interspecific sorghum population.
Genetics 1995;141(1):391-411.
1995: Andrew H Paterson; K F Schertz; Y R Lin; S C Liu; Y L Chang
The weediness of wild plants: molecular analysis of genes influencing dispersal and persistence of johnsongrass, Sorghum halepense (L.) Pers.
Proceedings of the National Academy of Sciences of the United States of America 1995;92(13):6127-31.
1994: S P Kowalski; T H Lan; K A Feldmann; Andrew H Paterson
QTL mapping of naturally-occurring variation in flowering time of Arabidopsis thaliana.
Molecular & general genetics : MGG 1994;245(5):548-55.
1994: S S Woo; Jiming Jiang; Bikram S Gill; Andrew H Paterson; Rod A Wing
Construction and characterization of a bacterial artificial chromosome library of Sorghum bicolor.
Nucleic acids research 1994;22(23):4922-31.
1994: A J Reinisch; J M Dong; C L Brubaker; David M Stelly; Jonathan F Wendel; Andrew H Paterson
A detailed RFLP map of cotton, Gossypium hirsutum x Gossypium barbadense: chromosome organization and evolution in a disomic polyploid genome.
Genetics 1994;138(3):829-47.
1994: S P Kowalski; T H Lan; K A Feldmann; Andrew H Paterson
Comparative mapping of Arabidopsis thaliana and Brassica oleracea chromosomes reveals islands of conserved organization.
Genetics 1994;138(2):499-510.
1993: Rod A Wing; Vipin K Rastogi; Hong-Bin Zhang; Andrew H Paterson; Steven D Tanksley
An improved method of plant megabase DNA isolation in agarose microbeads suitable for physical mapping and YAC cloning.
The Plant journal : for cell and molecular biology 1993;4(5):893-8.
1993: G L Wang; Rod A Wing; Andrew H Paterson
PCR amplification from single seeds, facilitating DNA marker-assisted breeding.
Nucleic acids research 1993;21(10):2527.