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2008: Turgut Baştuğ; Po-Chia Chen; Swarna M Patra; Serdar Kuyucak
Potential of mean force calculations of ligand binding to ion channels from Jarzynski's equality and umbrella sampling.
The Journal of chemical physics 2008;128(15):155104.
2007: Swarna M Patra; Turgut Baştug; Serdar Kuyucak
Binding of organic cations to gramicidin A channel studied with AutoDock and molecular dynamics simulations.
The journal of physical chemistry. B 2007;111(38):11303-11.
2006: Turgut Baştuğ; Swarna M Patra; Serdar Kuyucak
Molecular dynamics simulations of gramicidin A in a lipid bilayer: from structure-function relations to force fields.
Chemistry and physics of lipids 2006;141(1-2):197-204.
2006: Turgut Baştuğ; Angus Gray-Weale; Swarna M Patra; Serdar Kuyucak
Role of protein flexibility in ion permeation: a case study in gramicidin A.
Biophysical journal 2006;90(7):2285-96.