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Amanda Paulovich

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TOP 3
Dongqing Huang; Brian D Piening; Amanda Paulovich
The preference for error-free or error-prone postreplication repair in Saccharomyces cerevisiae exposed to low-dose methyl methanesulfonate is cell cycle dependent.
Brian D Piening; Dongqing Huang; Amanda Paulovich
Novel connections between DNA replication, telomere homeostasis, and the DNA damage response revealed by a genome-wide screen for TEL1/ATM interactions in Saccharomyces cerevisiae.
Jeffrey Whiteaker; Ping Yan; Lei Zhao; Chenwei Lin; Pei Wang; Amanda Paulovich
Sequential multiplexed analyte quantification using peptide immunoaffinity enrichment coupled to mass spectrometry.

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All Publications

2013: Dongqing Huang; Brian D Piening; Amanda Paulovich
The preference for error-free or error-prone postreplication repair in Saccharomyces cerevisiae exposed to low-dose methyl methanesulfonate is cell cycle dependent.
Molecular and cellular biology 2013;33(8):1515-27.
2013: Brian D Piening; Dongqing Huang; Amanda Paulovich
Novel connections between DNA replication, telomere homeostasis, and the DNA damage response revealed by a genome-wide screen for TEL1/ATM interactions in Saccharomyces cerevisiae.
Genetics 2013;193(4):1117-33.
2012: Jeffrey Whiteaker; Ping Yan; Lei Zhao; Chenwei Lin; Pei Wang; Amanda Paulovich
Sequential multiplexed analyte quantification using peptide immunoaffinity enrichment coupled to mass spectrometry.
Molecular & cellular proteomics : MCP 2012;11(6):M111.015347.
2012: Eric Kuhn; D R Mani; Amanda Paulovich; Terry W Pearson; Matthew E Pope; Keith D Rivera; Steven J Skates; Derek Smith; Jeffrey Whiteaker; Lei Zhao; N Leigh Anderson; Angela M Jackson; Steven A Carr
Interlaboratory evaluation of automated, multiplexed peptide immunoaffinity enrichment coupled to multiple reaction monitoring mass spectrometry for quantifying proteins in plasma.
Molecular & cellular proteomics : MCP 2012;11(6):M111.013854.
2012: Regine M Schoenherr; Mary Trute; Uliana J Voytovich; Jeffrey Whiteaker; Ping Yan; Lei Zhao; Richard G Ivey; Jacob Kennedy; Chenwei Lin; Amanda Paulovich
Multiplexed quantification of estrogen receptor and HER2/Neu in tissue and cell lysates by peptide immunoaffinity enrichment mass spectrometry.
Proteomics 2012;12(8):1253-60.
2011: Jeffrey Whiteaker; Amanda Paulovich
Peptide immunoaffinity enrichment coupled with mass spectrometry for peptide and protein quantification.
Clinics in laboratory medicine 2011;31(3):385-96.
2011: Regine M Schoenherr; Karen S Kelly-Spratt; ChenWei Lin; Jeffrey Whiteaker; Tao Liu; Ted Holzman; Ilsa Coleman; Li-Chia Feng; Travis D Lorentzen; Alexei L Krasnoselsky; Pei Wang; Yan Liu; Kay E Gurley; Lynn M Amon; Athena A Schepmoes; Ronald J Moore; David G Camp; Lewis A Chodosh; Richard D Smith; Peter S Nelson; Martin W McIntosh; Christopher J Kemp; Amanda Paulovich
Proteome and transcriptome profiles of a Her2/Neu-driven mouse model of breast cancer.
Proteomics. Clinical applications 2011;5(3-4):179-88.
2011: Jeffrey Whiteaker; Lei Zhao; Susan E Abbatiello; Michael Burgess; Eric Kuhn; ChenWei Lin; Matthew E Pope; Morteza Razavi; N Leigh Anderson; Terry W Pearson; Steven A Carr; Amanda Paulovich
Evaluation of large scale quantitative proteomic assay development using peptide affinity-based mass spectrometry.
Molecular & cellular proteomics : MCP 2011;10(4):M110.005645.
2010: Momoko Furuya; Sara B Kirschbaum; Amanda Paulovich; Bendicht U Pauli; Heidi Zhang; Jonathan S Alexander; Andrew G Farr; Alanna Ruddell
Lymphatic endothelial murine chloride channel calcium-activated 1 is a ligand for leukocyte LFA-1 and Mac-1.
Journal of immunology (Baltimore, Md. : 1950) 2010;185(10):5769-77.
2010: Amanda Paulovich; Dean Billheimer; Amy-Joan L Ham; Lorenzo Vega-Montoto; Paul A Rudnick; David L Tabb; Pei Wang; Ronald K Blackman; David M Bunk; Helene L Cardasis; Karl R Clauser; Christopher R Kinsinger; Birgit Schilling; Tony J Tegeler; Asokan Mulayath Variyath; Mu Wang; Jeffrey Whiteaker; Lisa J Zimmerman; David Fenyo; Steven A Carr; Susan J Fisher; Bradford W Gibson; Mehdi Mesri; Thomas A Neubert; Fred E Regnier; Henry Rodriguez; Cliff Spiegelman; Stephen E Stein; Paul Tempst; Daniel C Liebler
Interlaboratory study characterizing a yeast performance standard for benchmarking LC-MS platform performance.
Molecular & cellular proteomics : MCP 2010;9(2):242-54.
2010: Jeffrey Whiteaker; Lei Zhao; Leigh Anderson; Amanda Paulovich
An automated and multiplexed method for high throughput peptide immunoaffinity enrichment and multiple reaction monitoring mass spectrometry-based quantification of protein biomarkers.
Molecular & cellular proteomics : MCP 2010;9(1):184-96.
2009: Richard G Ivey; Oby Subramanian; Travis D Lorentzen; Amanda Paulovich
Antibody-based screen for ionizing radiation-dependent changes in the Mammalian proteome for use in biodosimetry.
Radiation research 2009;171(5):549-61.
2007: Jeffrey Whiteaker; Heidi Zhang; Lei Zhao; Pei Wang; Karen S Kelly-Spratt; Richard G Ivey; Brian D Piening; Li-Chia Feng; Erik Kasarda; Kay E Gurley; Jimmy K Eng; Lewis A Chodosh; Christopher J Kemp; Martin W McIntosh; Amanda Paulovich
Integrated pipeline for mass spectrometry-based discovery and confirmation of biomarkers demonstrated in a mouse model of breast cancer.
Journal of proteome research 2007;6(10):3962-75.
2007: Amol Prakash; Brian Piening; Jeffrey Whiteaker; Heidi Zhang; Scott A Shaffer; Daniel Martin; Laura Hohmann; Kelly Cooke; James M Olson; Stacey Hansen; Mark R Flory; Hookeun Lee; Julian Watts; David R Goodlett; Ruedi Aebersold; Amanda Paulovich; Benno Schwikowski
Assessing bias in experiment design for large scale mass spectrometry-based quantitative proteomics.
Molecular & cellular proteomics : MCP 2007;6(10):1741-8.
2007: Damon May; Matthew Fitzgibbon; Yan Liu; Ted Holzman; Jimmy Eng; Christopher J Kemp; Jeffrey Whiteaker; Amanda Paulovich; Martin McIntosh
A platform for accurate mass and time analyses of mass spectrometry data.
Journal of proteome research 2007;6(7):2685-94.
2007: Jeffrey Whiteaker; Lei Zhao; Heidi Y Zhang; Li-Chia Feng; Brian D Piening; Leigh Anderson; Amanda Paulovich
Antibody-based enrichment of peptides on magnetic beads for mass-spectrometry-based quantification of serum biomarkers.
Analytical biochemistry 2007;362(1):44-54.
2007: Jeffrey Whiteaker; Heidi Zhang; Jimmy K Eng; Ruihua Fang; Brian D Piening; Li-Chia Feng; Travis D Lorentzen; Regine M Schoenherr; John F Keane; Ted Holzman; Matthew Fitzgibbon; ChenWei Lin; HUI ZHANG; Kelly Cooke; Tao Liu; David G Camp; Leigh Anderson; Julian Watts; Richard D Smith; Martin W McIntosh; Amanda Paulovich
Head-to-head comparison of serum fractionation techniques.
Journal of proteome research 2007;6(2):828-36.
2006: Brian B Haab; Amanda Paulovich; N Leigh Anderson; Adam M Clark; Gregory J Downing; Henning Hermjakob; Joshua LaBaer; Mathias Uhlen
A reagent resource to identify proteins and peptides of interest for the cancer community: a workshop report.
Molecular & cellular proteomics : MCP 2006;5(10):1996-2007.
2006: Leland H Hartwell; David A Mankoff; Amanda Paulovich; Scott Ramsey; Elizabeth M Swisher
Cancer biomarkers: a systems approach.
Nature biotechnology 2006;24(8):905-8.
2006: Matthew Bellew; Marc Coram; Matthew Fitzgibbon; Mark Igra; Timothy W Randolph; Pei Wang; Damon May; Jimmy Eng; Ruihua Fang; Chenwei Lin; Jinzhi Chen; David R Goodlett; Jeffrey Whiteaker; Amanda Paulovich; Martin McIntosh
A suite of algorithms for the comprehensive analysis of complex protein mixtures using high-resolution LC-MS.
Bioinformatics (Oxford, England) 2006;22(15):1902-9.
2006: Brian D Piening; Pei Wang; Chaitanya S Bangur; Jeffrey Whiteaker; Heidi Zhang; Li-Chia Feng; John F Keane; Jimmy K Eng; Hua Tang; Amol Prakash; Martin W McIntosh; Amanda Paulovich
Quality control metrics for LC-MS feature detection tools demonstrated on Saccharomyces cerevisiae proteomic profiles.
Journal of proteome research 2006;5(7):1527-34.
2006: Amol Prakash; Parag Mallick; Jeffrey Whiteaker; Heidi Zhang; Amanda Paulovich; Mark R Flory; Hookeun Lee; Ruedi Aebersold; Benno Schwikowski
Signal maps for mass spectrometry-based comparative proteomics.
Molecular & cellular proteomics : MCP 2006;5(3):423-32.
2006: Pei Wang; Hua Tang; Heidi Zhang; Jeffrey Whiteaker; Amanda Paulovich; Martin McIntosh
Normalization regarding non-random missing values in high-throughput mass spectrometry data.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2006;():315-26.
2006: Adam Rauch; Matthew Bellew; Jimmy Eng; Matthew Fitzgibbon; Ted Holzman; Peter Hussey; Mark Igra; Brendan Maclean; Chen Wei Lin; Andrea Detter; Ruihua Fang; Vitor Faca; Phil Gafken; Heidi Zhang; Jeffrey Whiteaker; Jeffrey Whitaker; David States; Samir Hanash; Amanda Paulovich; Martin W McIntosh
Computational Proteomics Analysis System (CPAS): an extensible, open-source analytic system for evaluating and publishing proteomic data and high throughput biological experiments.
Journal of proteome research 2006;5(1):112-21.
2005: Aravind Subramanian; Pablo Tamayo; Vamsi K Mootha; Sayan Mukherjee; Benjamin L Ebert; Michael A Gillette; Amanda Paulovich; Scott L Pomeroy; Todd R Golub; Eric S Lander; Jill P Mesirov
Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(43):15545-50.
1998: Amanda Paulovich; C D Armour; Leland H Hartwell
The Saccharomyces cerevisiae RAD9, RAD17, RAD24 and MEC3 genes are required for tolerating irreparable, ultraviolet-induced DNA damage.
Genetics 1998;150(1):75-93.
1997: Amanda Paulovich; David P Toczyski; Leland H Hartwell
When checkpoints fail.
Cell 1997;88(3):315-21.
1997: Amanda Paulovich; R U Margulies; BM Garvik; Leland H Hartwell
RAD9, RAD17, and RAD24 are required for S phase regulation in Saccharomyces cerevisiae in response to DNA damage.
Genetics 1997;145(1):45-62.
1995: Amanda Paulovich; Leland H Hartwell
A checkpoint regulates the rate of progression through S phase in S. cerevisiae in response to DNA damage.
Cell 1995;82(5):841-7.
1993: Amanda Paulovich
Creativity and graduate education.
Molecular biology of the cell 1993;4(6):565-8.