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Arnold Berk

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Cong Liu; James S Nowick; Jiyong Park; Anna Pensalfini; Michael Sawaya; Minglei Zhao; Arnold J Berk; Pin-Nan Cheng; Charles G Glabe; Dawei Gou; Lin Jiang; David Eisenberg
Out-of-register β-sheets suggest a pathway to toxic amyloid aggregates.
Arnold J Berk
Yin and yang of mediator function revealed by human mutants.
Roberto Ferrari; Arnold J Berk; Giancarlo Bonora; Yvonne Chan; Bing Li; Amit Oberai; Matteo Pellegrini; Rajkumar Sasidharan; Trent Su; Siavash K Kurdistani
Reorganization of the host epigenome by a viral oncogene.

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2012: Cong Liu; James S Nowick; Jiyong Park; Anna Pensalfini; Michael Sawaya; Minglei Zhao; Arnold J Berk; Pin-Nan Cheng; Charles G Glabe; Dawei Gou; Lin Jiang; David Eisenberg
Out-of-register β-sheets suggest a pathway to toxic amyloid aggregates.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(51):20913-8.
2012: Arnold J Berk
Yin and yang of mediator function revealed by human mutants.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(48):19519-20.
2012: Roberto Ferrari; Arnold J Berk; Giancarlo Bonora; Yvonne Chan; Bing Li; Amit Oberai; Matteo Pellegrini; Rajkumar Sasidharan; Trent Su; Siavash K Kurdistani
Reorganization of the host epigenome by a viral oncogene.
Genome research 2012;22(7):1212-21.
2010: Jose S Gil; S D Gallaher; Arnold J Berk
Delivery of an EBV episome by a self-circularizing helper-dependent adenovirus: long-term transgene expression in immunocompetent mice.
Gene therapy 2010;17(10):1288-93.
2009: Roberto Ferrari; Arnold J Berk; Siavash K Kurdistani
Viral manipulation of the host epigenome for oncogenic transformation.
Nature reviews. Genetics 2009;10(5):290-4.
2009: Sean D Gallaher; Jose S Gil; Oliver Dorigo; Arnold J Berk
Robust in vivo transduction of a genetically stable Epstein-Barr virus episome to hepatocytes in mice by a hybrid viral vector.
Journal of virology 2009;83(7):3249-57.
2009: Michael A Balamotis; Mario Pennella; Jennitte L Stevens; Bohdan Wasylyk; Andrew S Belmont; Arnold J Berk
Complexity in transcription control at the activation domain-mediator interface.
Science signaling 2009;2(69):ra20.
2008: Roberto Ferrari; Matteo Pellegrini; Gregory A Horwitz; Wei Xie; Arnold J Berk; Siavash K Kurdistani
Epigenetic reprogramming by adenovirus e1a.
Science (New York, N.Y.) 2008;321(5892):1086-8.
2008: Gregory A Horwitz; Kangling Zhang; Matthew A McBrian; Michael Grunstein; Siavash K Kurdistani; Arnold J Berk
Adenovirus small e1a alters global patterns of histone modification.
Science (New York, N.Y.) 2008;321(5892):1084-5.
2007: Jennifer L Woo; Arnold J Berk
Adenovirus ubiquitin-protein ligase stimulates viral late mRNA nuclear export.
Journal of virology 2007;81(2):575-87.
2006: Johannes Schwarz; Sigrid C Schwarz; Oliver Dorigo; Alexandra Stützer; Florian Wegner; Cesar Labarca; Purnima Deshpande; Jose S Gil; Arnold J Berk; Henry A Lester
Enhanced expression of hypersensitive alpha4* nAChR in adult mice increases the loss of midbrain dopaminergic neurons.
FASEB journal : official publication of the Federation of American Societies for Experimental Biology 2006;20(7):935-46.
2005: Arnold J Berk
Recent lessons in gene expression, cell cycle control, and cell biology from adenovirus.
Oncogene 2005;24(52):7673-85.
2005: Yue Liu; Anna Shevchenko; Andrej Shevchenko; Arnold J Berk
Adenovirus exploits the cellular aggresome response to accelerate inactivation of the MRN complex.
Journal of virology 2005;79(22):14004-16.
2005: Qing Yue; Matthias Groszer; Jose S Gil; Arnold J Berk; Albee Messing; Hong Wu; Xin Liu
PTEN deletion in Bergmann glia leads to premature differentiation and affects laminar organization.
Development (Cambridge, England) 2005;132(14):3281-91.
2005: Gang Wang; Michael A Balamotis; Jennitte L Stevens; Yuki Yamaguchi; Hiroshi Handa; Arnold J Berk
Mediator requirement for both recruitment and postrecruitment steps in transcription initiation.
Molecular cell 2005;17(5):683-94.
2004: Lei Fang; Jennitte L Stevens; Arnold J Berk; Katherine R Spindler
Requirement of Sur2 for efficient replication of mouse adenovirus type 1.
Journal of virology 2004;78(23):12888-900.
2004: Oliver Dorigo; Jose S Gil; Sean D Gallaher; Brenton T Tan; Maria G Castro; Pedro R Lowenstein; Michele P Calos; Arnold J Berk
Development of a novel helper-dependent adenovirus-Epstein-Barr virus hybrid system for the stable transformation of mammalian cells.
Journal of virology 2004;78(12):6556-66.
2003: Greg T Cantin; Jennitte L Stevens; Arnold J Berk
Activation domain-mediator interactions promote transcription preinitiation complex assembly on promoter DNA.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(21):12003-8.
2003: Oliver Schröder; Gene O Bryant; E Peter Geiduschek; Arnold J Berk; George A Kassavetis
A common site on TBP for transcription by RNA polymerases II and III.
The EMBO journal 2003;22(19):5115-24.
2002: Josephine N Harada; Anna Shevchenko; Andrej Shevchenko; David C Pallas; Arnold J Berk
Analysis of the adenovirus E1B-55K-anchored proteome reveals its link to ubiquitination machinery.
Journal of virology 2002;76(18):9194-206.
2002: Gang Wang; Arnold J Berk
In vivo association of adenovirus large E1A protein with the human mediator complex in adenovirus-infected and -transformed cells.
Journal of virology 2002;76(18):9186-93.
2002: Jennitte L Stevens; Greg T Cantin; Gang Wang; Anna Shevchenko; Anna Shevchenko; Arnold J Berk
Transcription control by E1A and MAP kinase pathway via Sur2 mediator subunit.
Science (New York, N.Y.) 2002;296(5568):755-8.
2002: Lisa S Martel; Helen J Brown; Arnold J Berk
Evidence that TAF-TATA box-binding protein interactions are required for activated transcription in mammalian cells.
Molecular and cellular biology 2002;22(8):2788-98.
2001: Gang Wang; Greg T Cantin; Jennitte L Stevens; Arnold J Berk
Characterization of mediator complexes from HeLa cell nuclear extract.
Molecular and cellular biology 2001;21(14):4604-13.
2000: Arnold J Berk
TBP-like factors come into focus.
Cell 2000;103(1):5-8.
2000: Harvey R Herschman; Duncan C MacLaren; Meera Iyer; Mohammad Namavari; K Bobinski; Leeta Alison Green; Lily Wu; Arnold J Berk; Tatsushi Toyokuni; Jorge R Barrio; Simon R Cherry; Michael E Phelps; E P Sandgren; Sanjiv S Gambhir
Seeing is believing: non-invasive, quantitative and repetitive imaging of reporter gene expression in living animals, using positron emission tomography.
Journal of neuroscience research 2000;59(6):699-705.
1999: B T Tan; Li Wu; Arnold J Berk
An adenovirus-Epstein-Barr virus hybrid vector that stably transforms cultured cells with high efficiency.
Journal of virology 1999;73(9):7582-9.
1999: J N Harada; Arnold J Berk
p53-Independent and -dependent requirements for E1B-55K in adenovirus type 5 replication.
Journal of virology 1999;73(7):5333-44.
1999: Arnold J Berk
Activation of RNA polymerase II transcription.
Current opinion in cell biology 1999;11(3):330-5.
1999: Thomas Boyer; ME Martin; E Lees; R P Ricciardi; Arnold J Berk
Mammalian Srb/Mediator complex is targeted by adenovirus E1A protein.
Nature 1999;399(6733):276-9.
1999: Duncan C MacLaren; Sanjiv S Gambhir; Nagichettiar Satyamurthy; Jorge R Barrio; S Sharfstein; Tatsushi Toyokuni; Lily Wu; Arnold J Berk; Simon R Cherry; Michael E Phelps; Harvey R Herschman
Repetitive, non-invasive imaging of the dopamine D2 receptor as a reporter gene in living animals.
Gene therapy 1999;6(5):785-91.
1999: ME Martin; Arnold J Berk
Corepressor required for adenovirus E1B 55,000-molecular-weight protein repression of basal transcription.
Molecular and cellular biology 1999;19(5):3403-14.
1999: Sanjiv S Gambhir; Jorge R Barrio; Michael E Phelps; Meera Iyer; Mohammad Namavari; Nagichettiar Satyamurthy; Lily Wu; Leeta Alison Green; Eileen Bauer; Duncan C MacLaren; Khoi Nguyen; Arnold J Berk; Simon R Cherry; Harvey R Herschman
Imaging adenoviral-directed reporter gene expression in living animals with positron emission tomography.
Proceedings of the National Academy of Sciences of the United States of America 1999;96(5):2333-8.
1998: Sanjiv S Gambhir; Jorge R Barrio; Lily Wu; Meera Iyer; Mohammad Namavari; Nagichettiar Satyamurthy; Eileen Bauer; C Parrish; Duncan C MacLaren; A R Borghei; Leeta Alison Green; S Sharfstein; Arnold J Berk; Simon R Cherry; Michael E Phelps; Harvey R Herschman
Imaging of adenoviral-directed herpes simplex virus type 1 thymidine kinase reporter gene expression in mice with radiolabeled ganciclovir.
Journal of nuclear medicine : official publication, Society of Nuclear Medicine 1998;39(11):2003-11.
1998: N Kobayashi; PJ Horn; SM Sullivan; Steven J Triezenberg; Thomas Boyer; Arnold J Berk
DA-complex assembly activity required for VP16C transcriptional activation.
Molecular and cellular biology 1998;18(7):4023-31.
1998: ME Martin; Arnold J Berk
Adenovirus E1B 55K represses p53 activation in vitro.
Journal of virology 1998;72(4):3146-54.
1998: Y Shen; George A Kassavetis; G O Bryant; Arnold J Berk
Polymerase (Pol) III TATA box-binding protein (TBP)-associated factor Brf binds to a surface on TBP also required for activated Pol II transcription.
Molecular and cellular biology 1998;18(3):1692-700.
1998: Arnold J Berk; Thomas Boyer; Achillefs N Kapanidis; Richard H. Ebright; N N Kobayashi; PJ Horn; SM Sullivan; R Koop; M A Surby; Steven J Triezenberg
Mechanisms of viral activators.
Cold Spring Harbor symposia on quantitative biology 1998;63():243-52.
1996: G O Bryant; L S Martel; S K Burley; Arnold J Berk
Radical mutations reveal TATA-box binding protein surfaces required for activated transcription in vivo.
Genes & development 1996;10(19):2491-504.
1996: Z S Juo; Thang Kien Chiu; P M Leiberman; I Baikalov; Arnold J Berk; Richard E Dickerson
How proteins recognize the TATA box.
Journal of molecular biology 1996;261(2):239-54.
1996: Y Shen; M Igo; P Yalamanchili; Arnold J Berk; Asim Dasgupta
DNA binding domain and subunit interactions of transcription factor IIIC revealed by dissection with poliovirus 3C protease.
Molecular and cellular biology 1996;16(8):4163-71.
1995: Arnold J Berk
Biochemistry meets genetics in the holoenzyme.
Proceedings of the National Academy of Sciences of the United States of America 1995;92(26):11952-4.
1995: E Martinez; Q Zhou; Noelle D L'Etoile; Thomas Oelgeschläger; Arnold J Berk; Robert G Roeder
Core promoter-specific function of a mutant transcription factor TFIID defective in TATA-box binding.
Proceedings of the National Academy of Sciences of the United States of America 1995;92(25):11864-8.
1995: Xueli Liu; Arnold J Berk
Reversal of in vitro p53 squelching by both TFIIB and TFIID.
Molecular and cellular biology 1995;15(11):6474-8.
1995: N Kobayashi; Thomas Boyer; Arnold J Berk
A class of activation domains interacts directly with TFIIA and stimulates TFIIA-TFIID-promoter complex assembly.
Molecular and cellular biology 1995;15(11):6465-73.
1995: Q Zhou; Arnold J Berk
The yeast TATA-binding protein (TBP) core domain assembles with human TBP-associated factors into a functional TFIID complex.
Molecular and cellular biology 1995;15(1):534-9.
1994: Paul M Lieberman; Arnold J Berk
A mechanism for TAFs in transcriptional activation: activation domain enhancement of TFIID-TFIIA--promoter DNA complex formation.
Genes & development 1994;8(9):995-1006.
1994: Noelle D L'Etoile; M L Fahnestock; Y Shen; R Aebersold; Arnold J Berk
Human transcription factor IIIC box B binding subunit.
Proceedings of the National Academy of Sciences of the United States of America 1994;91(5):1652-6.
1994: Patricia Yew; Xueli Liu; Arnold J Berk
Adenovirus E1B oncoprotein tethers a transcriptional repression domain to p53.
Genes & development 1994;8(2):190-202.
1993: Thomas Boyer; Arnold J Berk
Functional interaction of adenovirus E1A with holo-TFIID.
Genes & development 1993;7(9):1810-23.
1993: Xueli Liu; Carl W Miller; P H Koeffler; Arnold J Berk
The p53 activation domain binds the TATA box-binding polypeptide in Holo-TFIID, and a neighboring p53 domain inhibits transcription.
Molecular and cellular biology 1993;13(6):3291-300.
1993: Q Zhou; Thomas Boyer; Arnold J Berk
Factors (TAFs) required for activated transcription interact with TATA box-binding protein conserved core domain.
Genes & development 1993;7(2):180-7.
1993: M E Clark; Paul M Lieberman; Arnold J Berk; Asim Dasgupta
Direct cleavage of human TATA-binding protein by poliovirus protease 3C in vivo and in vitro.
Molecular and cellular biology 1993;13(2):1232-7.
1992: Q Zhou; Paul M Lieberman; Thomas Boyer; Arnold J Berk
Holo-TFIID supports transcriptional stimulation by diverse activators and from a TATA-less promoter.
Genes & development 1992;6(10):1964-74.
1992: Patricia Yew; Arnold J Berk
Inhibition of p53 transactivation required for transformation by adenovirus early 1B protein.
Nature 1992;357(6373):82-5.
1991: Paul M Lieberman; Arnold J Berk
The Zta trans-activator protein stabilizes TFIID association with promoter DNA by direct protein-protein interaction.
Genes & development 1991;5(12B):2441-54.
1991: R Segal; Arnold J Berk
Promoter activity and distance constraints of one versus two Sp1 binding sites.
The Journal of biological chemistry 1991;266(30):20406-11.
1991: W S Lee; C C Kao; G O Bryant; Xueli Liu; Arnold J Berk
Adenovirus E1A activation domain binds the basic repeat in the TATA box transcription factor.
Cell 1991;67(2):365-76.
1991: Q A Zhou; M C Schmidt; Arnold J Berk
Requirement for acidic amino acid residues immediately N-terminal to the conserved domain of Saccharomyces cerevisiae TFIID.
The EMBO journal 1991;10(7):1843-52.
1991: Paul M Lieberman; M C Schmidt; C C Kao; Arnold J Berk
Two distinct domains in the yeast transcription factor IID and evidence for a TATA box-induced conformational change.
Molecular and cellular biology 1991;11(1):63-74.
1990: C C Kao; Patricia Yew; Arnold J Berk
Domains required for in vitro association between the cellular p53 and the adenovirus 2 E1B 55K proteins.
Virology 1990;179(2):806-14.
1990: Patricia Yew; C C Kao; Arnold J Berk
Dissection of functional domains in the adenovirus 2 early 1B 55K polypeptide by suppressor-linker insertional mutagenesis.
Virology 1990;179(2):795-805.
1990: C C Kao; Paul M Lieberman; M C Schmidt; Q Zhou; R Pei; Arnold J Berk
Cloning of a transcriptionally active human TATA binding factor.
Science (New York, N.Y.) 1990;248(4963):1646-50.
1990: Paul M Lieberman; Arnold J Berk
In vitro transcriptional activation, dimerization, and DNA-binding specificity of the Epstein-Barr virus Zta protein.
Journal of virology 1990;64(6):2560-8.
1990: K Leong; W Lee; Arnold J Berk
High-level transcription from the adenovirus major late promoter requires downstream binding sites for late-phase-specific factors.
Journal of virology 1990;64(1):51-60.
1989: L G Fradkin; S K Yoshinaga; Arnold J Berk; Asim Dasgupta
Human transcription factor TFIIIC2 specifically interacts with a unique sequence in the Xenopus laevis 5S rRNA gene.
Molecular and cellular biology 1989;9(11):4941-50.
1989: P A Boulanger; Noelle D L'Etoile; Arnold J Berk
A DNA-binding domain of human transcription factor IIIC2.
Nucleic acids research 1989;17(19):7761-70.
1989: M C Schmidt; C C Kao; R Pei; Arnold J Berk
Yeast TATA-box transcription factor gene.
Proceedings of the National Academy of Sciences of the United States of America 1989;86(20):7785-9.
1989: M C Schmidt; Q Zhou; Arnold J Berk
Sp1 activates transcription without enhancing DNA-binding activity of the TATA box factor.
Molecular and cellular biology 1989;9(8):3299-307.
1989: R Pei; Arnold J Berk
Multiple transcription factor binding sites mediate adenovirus E1A transactivation.
Journal of virology 1989;63(8):3499-506.
1989: S K Yoshinaga; Noelle D L'Etoile; Arnold J Berk
Purification and characterization of transcription factor IIIC2.
The Journal of biological chemistry 1989;264(18):10726-31.
1988: L J Brunet; Arnold J Berk
Concentration dependence of transcriptional transactivation in inducible E1A-containing human cells.
Molecular and cellular biology 1988;8(11):4799-807.
1988: L Wu; Arnold J Berk
Transcriptional activation by the pseudorabies virus immediate early protein requires the TATA box element in the adenovirus 2 E1B promoter.
Virology 1988;167(1):318-22.
1988: N Dean; Arnold J Berk
Ordering promoter binding of class III transcription factors TFIIIC1 and TFIIIC2.
Molecular and cellular biology 1988;8(8):3017-25.
1988: K Leong; L Brunet; Arnold J Berk
Factors responsible for the higher transcriptional activity of extracts of adenovirus-infected cells fractionate with the TATA box transcription factor.
Molecular and cellular biology 1988;8(4):1765-74.
1988: L Wu; Arnold J Berk
Constraints on spacing between transcription factor binding sites in a simple adenovirus promoter.
Genes & development 1988;2(4):403-11.
1987: N Dean; Arnold J Berk
Separation of TFIIIC into two functional components by sequence specific DNA affinity chromatography.
Nucleic acids research 1987;15(23):9895-907.
1987: P A Boulanger; S K Yoshinaga; Arnold J Berk
DNA-binding properties and characterization of human transcription factor TFIIIC2.
The Journal of biological chemistry 1987;262(31):15098-105.
1987: L G Fradkin; S K Yoshinaga; Arnold J Berk; Asim Dasgupta
Inhibition of host cell RNA polymerase III-mediated transcription by poliovirus: inactivation of specific transcription factors.
Molecular and cellular biology 1987;7(11):3880-7.
1987: S K Yoshinaga; P A Boulanger; Arnold J Berk
Resolution of human transcription factor TFIIIC into two functional components.
Proceedings of the National Academy of Sciences of the United States of America 1987;84(11):3585-9.
1986: K Leong; Arnold J Berk
Adenovirus early region 1A protein increases the number of template molecules transcribed in cell-free extracts.
Proceedings of the National Academy of Sciences of the United States of America 1986;83(16):5844-8.
1985: L G Fradkin; K Leong; C D Morrow; Arnold J Berk; Asim Dasgupta
Primer-dependent eukaryotic RNA polymerase capable of accurate transcription from the adenovirus major late promoter in a reconstituted system.
Proceedings of the National Academy of Sciences of the United States of America 1985;82(23):7979-83.