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Jan Pawlowski

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Laure Apothéloz-Perret-Gentil; Maria Holzmann; Jan Pawlowski
Arnoldiellina fluorescens gen. et sp. nov.--a new green autofluorescent foraminifer from the Gulf of Eilat (Israel).
Roberto Sierra; Loïc Pillet; Galina Aglyamova; C de Vargas; Johan Decelle; Mikhail V Matz; Fabrice Not; Jan Pawlowski
Deep relationships of Rhizaria revealed by phylogenomics: a farewell to Haeckel's Radiolaria.
Franck Lejzerowicz; Wojciech Majewski; Cyril Obadia; Pedro Martinez Arbizu; Johan Decelle; Philippe Esling; Witold Szczucinski; Jan Pawlowski
Ancient DNA complements microfossil record in deep-sea subsurface sediments.

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All Publications

2013: Laure Apothéloz-Perret-Gentil; Maria Holzmann; Jan Pawlowski
Arnoldiellina fluorescens gen. et sp. nov.--a new green autofluorescent foraminifer from the Gulf of Eilat (Israel).
European journal of protistology 2013;49(2):210-6.
2013: Roberto Sierra; Loïc Pillet; Galina Aglyamova; C de Vargas; Johan Decelle; Mikhail V Matz; Fabrice Not; Jan Pawlowski
Deep relationships of Rhizaria revealed by phylogenomics: a farewell to Haeckel's Radiolaria.
Molecular phylogenetics and evolution 2013;67(1):53-9.
2013: Franck Lejzerowicz; Wojciech Majewski; Cyril Obadia; Pedro Martinez Arbizu; Johan Decelle; Philippe Esling; Witold Szczucinski; Jan Pawlowski
Ancient DNA complements microfossil record in deep-sea subsurface sediments.
Biology letters 2013;9(4):20130283.
2013: Jan Pawlowski
The new micro-kingdoms of eukaryotes.
BMC biology 2013;11():40.
2013: Loïc Pillet; Jan Pawlowski
Transcriptome analysis of foraminiferan Elphidium margaritaceum questions the role of gene transfer in kleptoplastidy.
Molecular biology and evolution 2013;30(1):66-9.
2013: Alexander Kudryavtsev; Jan Pawlowski
Squamamoeba japonica n. g. n. sp. (Amoebozoa): a deep-sea amoeba from the Sea of Japan with a novel cell coat structure.
Protist 2013;164(1):13-23.
2012: Sina M Adl; David Bass; Samuel S Bowser; Matthew W Brown; Fabien Burki; Micah Dunthorn; Vladimír Hampl; Aaron Heiss; Mona Hoppenrath; Christopher E Lane; Enrique Lara; Line Le Gall; Julius Lukes; Denis H Lynn; Hilary McManus; Edward A D Mitchell; Sharon E Mozley-Stanridge; Laura W Parfrey; Jan Pawlowski; Sonja Rueckert; Conrad L Schoch; Laura Shadwick; Alastair G B Simpson; Alexey Smirnov; Frederick W Spiegel
The revised classification of eukaryotes.
The Journal of eukaryotic microbiology 2012;59(5):429-93.
2012: Loïc Pillet; Delia Fontaine; Jan Pawlowski
Intra-genomic ribosomal RNA polymorphism and morphological variation in Elphidium macellum suggests inter-specific hybridization in foraminifera.
PloS one 2012;7(2):e32373.
2011: Béatrice Lecroq; Franck Lejzerowicz; Magne Østerås; Dipankar Bachar; Loïc Baerlocher; Richard Christen; Philippe Esling; Laurent Farinelli; Jan Pawlowski
Ultra-deep sequencing of foraminiferal microbarcodes unveils hidden richness of early monothalamous lineages in deep-sea sediments.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(32):13177-82.
2011: Loïc Pillet; C de Vargas; Jan Pawlowski
Molecular identification of sequestered diatom chloroplasts and kleptoplastidy in foraminifera.
Protist 2011;162(3):394-404.
2011: Jan Pawlowski; Richard Christen; Béatrice Lecroq; Dipankar Bachar; Hamid Reza Shahbazkia; Linda Amaral-Zettler; Laure Guillou
Eukaryotic richness in the abyss: insights from pyrotag sequencing.
PloS one 2011;6(4):e18169.
2010: Franck Lejzerowicz; Jan Pawlowski; Laurence Fraissinet-Tachet; Roland Marmeisse
Molecular evidence for widespread occurrence of Foraminifera in soils.
Environmental microbiology 2010;12(9):2518-26.
2010: Mukti Ojha; Arlette Cattaneo; Séverine Hugh; Jan Pawlowski; Jos A Cox
Structure, expression and function of Allomyces arbuscula CDP II (metacaspase) gene.
Gene 2010;457(1-2):25-34.
2010: Jan Pawlowski; Beatrice Lecroq
Short rDNA barcodes for species identification in foraminifera.
The Journal of eukaryotic microbiology 2010;57(2):197-205.
2010: Fabien Burki; Alexander Kudryavtsev; Mikhail V Matz; Galina V Aglyamova; Simon Bulman; Mark Fiers; Patrick J Keeling; Jan Pawlowski
Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists.
BMC evolutionary biology 2010;10():377.
2010: Anna Maria Fiore-Donno; Sergey I Nikolaev; Michaela Nelson; Jan Pawlowski; Thomas Cavalier-Smith; Sandra L Baldauf
Deep phylogeny and evolution of slime moulds (mycetozoa).
Protist 2010;161(1):55-70.
2009: Anna Maria Fiore-Donno; Edward F Haskins; Jan Pawlowski; Thomas Cavalier-Smith
Semimorula liquescens is a modified echinostelid myxomycete (Mycetozoa).
Mycologia 2009;101(6):773-6.
2009: Jan Pawlowski; Andrew J Gooday
Precambrian biota: protistan origin of trace fossils?
Current biology : CB 2009;19(1):R28-30.
2009: Fabien Burki; Yuji Inagaki; Jon Bråte; John M Archibald; Patrick J Keeling; Thomas Cavalier-Smith; Miako Sakaguchi; Tetsuo Hashimoto; Ales Horak; Surendra Kumar; Dag Klaveness; Kjetill S Jakobsen; Jan Pawlowski; Kamran Shalchian-Tabrizi
Large-scale phylogenomic analyses reveal that two enigmatic protist lineages, telonemia and centroheliozoa, are related to photosynthetic chromalveolates.
Genome biology and evolution 2009;1():231-8.
2009: Jan Pawlowski; Fabien Burki
Untangling the phylogeny of amoeboid protists.
The Journal of eukaryotic microbiology 2009;56(1):16-25.
2008: Fabien Burki; Kamran Shalchian-Tabrizi; Jan Pawlowski
Phylogenomics reveals a new 'megagroup' including most photosynthetic eukaryotes.
Biology letters 2008;4(4):366-9.
2008: Anna Maria Fiore-Donno; Marianne Meyer; Sandra L Baldauf; Jan Pawlowski
Evolution of dark-spored Myxomycetes (slime-molds): molecules versus morphology.
Molecular phylogenetics and evolution 2008;46(3):878-89.
2007: Jan Pawlowski; José Fahrni; B Lecroq; David Longet; N Cornelius; Laurent Excoffier; Tomas Cedhagen; Andrew J Gooday
Bipolar gene flow in deep-sea benthic foraminifera.
Molecular ecology 2007;16(19):4089-96.
2007: David Longet; Jan Pawlowski
Higher-level phylogeny of Foraminifera inferred from the RNA polymerase II (RPB1) gene.
European journal of protistology 2007;43(3):171-7.
2007: Angelika Brandt; Andrew J Gooday; Simone N Brandão; Saskia Brix; Wiebke Brökeland; Tomas Cedhagen; Madhumita Choudhury; Nils Cornelius; Bruno Danis; Ilse De Mesel; Robert J Diaz; David C Gillan; Brigitte Ebbe; John A Howe; Dorte Janussen; Stefanie Kaiser; Katrin Linse; Marina Malyutina; Jan Pawlowski; Michael Raupach; Ann Vanreusel
First insights into the biodiversity and biogeography of the Southern Ocean deep sea.
Nature 2007;447(7142):307-11.
2007: F Sinniger; P Chevaldonné; Jan Pawlowski
Mitochondrial genome of Savalia savaglia (Cnidaria, Hexacorallia) and early metazoan phylogeny.
Journal of molecular evolution 2007;64(2):196-203.
2007: Fabien Burki; Kamran Shalchian-Tabrizi; Marianne Minge; Asmund Skjaeveland; Sergey I Nikolaev; Kjetill S Jakobsen; Jan Pawlowski
Phylogenomics reshuffles the eukaryotic supergroups.
PloS one 2007;2(8):e790.
2006: Fabien Burki; Jan Pawlowski
Monophyly of Rhizaria and multigene phylogeny of unicellular bikonts.
Molecular biology and evolution 2006;23(10):1922-30.
2006: Cédric Berney; Jan Pawlowski
A molecular time-scale for eukaryote evolution recalibrated with the continuous microfossil record.
Proceedings. Biological sciences / The Royal Society 2006;273(1596):1867-72.
2006: Fabien Burki; Sergey I Nikolaev; Ignacio Bolivar; Jackie Guiard; Jan Pawlowski
Analysis of expressed sequence tags from a naked foraminiferan Reticulomyxa filosa.
Genome / National Research Council Canada = Génome / Conseil national de recherches Canada 2006;49(8):882-7.
2006: Jérôme Flakowski; Ignacio Bolivar; José Fahrni; Jan Pawlowski
Tempo and mode of spliceosomal intron evolution in actin of foraminifera.
Journal of molecular evolution 2006;63(1):30-41.
2006: Sergey I Nikolaev; Cédric Berney; Nikolai B Petrov; Alexander P Mylnikov; José Fahrni; Jan Pawlowski
Phylogenetic position of Multicilia marina and the evolution of Amoebozoa.
International journal of systematic and evolutionary microbiology 2006;56(Pt 6):1449-58.
2006: Xavier Pochon; Juan I Montoya-Burgos; Benoit Stadelmann; Jan Pawlowski
Molecular phylogeny, evolutionary rates, and divergence timing of the symbiotic dinoflagellate genus Symbiodinium.
Molecular phylogenetics and evolution 2006;38(1):20-30.
2005: Lydia Garcia-Cuetos; Xavier Pochon; Jan Pawlowski
Molecular evidence for host-symbiont specificity in soritid foraminifera.
Protist 2005;156(4):399-412.
2005: Sergey I Nikolaev; Edward A D Mitchell; Nikolai B Petrov; Cédric Berney; José Fahrni; Jan Pawlowski
The testate lobose amoebae (order Arcellinida Kent, 1880) finally find their home within Amoebozoa.
Protist 2005;156(2):191-202.
2005: David Bass; David Moreira; Purificación López-García; Stephane Polet; Ema E-Y Chao; Sophie von der Heyden; Jan Pawlowski; Thomas Cavalier-Smith
Polyubiquitin insertions and the phylogeny of Cercozoa and Rhizaria.
Protist 2005;156(2):149-61.
2005: Alexey Smirnov; Elena Nassonova; Cédric Berney; José Fahrni; Ignacio Bolivar; Jan Pawlowski
Molecular phylogeny and classification of the lobose amoebae.
Protist 2005;156(2):129-42.
2004: Sergey I Nikolaev; Alexander P Mylnikov; Cédric Berney; José Fahrni; Jan Pawlowski; Vladimir V Aleshin; Nikolai B Petrov
Molecular phylogenetic analysis places Percolomonas cosmopolitus within Heterolobosea: evolutionary implications.
The Journal of eukaryotic microbiology 2004;51(5):575-81.
2004: Sergey I Nikolaev; Cédric Berney; José Fahrni; Ignacio Bolivar; Stephane Polet; Alexander P Mylnikov; Vladimir V Aleshin; Nikolai B Petrov; Jan Pawlowski
The twilight of Heliozoa and rise of Rhizaria, an emerging supergroup of amoeboid eukaryotes.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(21):8066-71.
2004: Stephane Polet; Cédric Berney; José Fahrni; Jan Pawlowski
Small-subunit ribosomal RNA gene sequences of Phaeodarea challenge the monophyly of Haeckel's Radiolaria.
Protist 2004;155(1):53-63.
2004: Andrea Habura; Jan Pawlowski; Steven D Hanes; Samuel S Bowser
Unexpected foraminiferal diversity revealed by small-subunit rDNA analysis of Antarctic sediment.
The Journal of eukaryotic microbiology 2004;51(2):173-9.
2004: Cédric Berney; José Fahrni; Jan Pawlowski
How many novel eukaryotic 'kingdoms'? Pitfalls and limitations of environmental DNA surveys.
BMC biology 2004;2():13.
2003: Sergey I Nikolaev; S Berney; José Fahrni; Alexander P Mylnikov; Nikolai B Petrov; Jan Pawlowski
Genetic relationships between desmothoracid heliozoa and gymnophryid amoebas as evidenced by comparison of the nucleotide sequences of 18S rRNA genes.
Doklady biological sciences : proceedings of the Academy of Sciences of the USSR, Biological sciences sections / translated from Russian 2003;393():553-6.
2003: Jan Pawlowski; Maria Holzmann; José Fahrni; Susan L Richardson
Small subunit ribosomal DNA suggests that the xenophyophorean Syringammina corbicula is a foraminiferan.
The Journal of eukaryotic microbiology 2003;50(6):483-7.
2003: John J Lee; Raul Olea; Megan Cevasco; Xavier Pochon; Maria Correia; Muki Shpigel; Jan Pawlowski
A marine dinoflagellate, Amphidinium eilatiensis n. sp., from the benthos of a mariculture sedimentation pond in Eilat, Israel.
The Journal of eukaryotic microbiology 2003;50(6):439-48.
2003: David Longet; John M Archibald; Patrick J Keeling; Jan Pawlowski
Foraminifera and Cercozoa share a common origin according to RNA polymerase II phylogenies.
International journal of systematic and evolutionary microbiology 2003;53(Pt 6):1735-9.
2003: José Fahrni; Ignacio Bolivar; Cédric Berney; Elena Nassonova; Alexey Smirnov; Jan Pawlowski
Phylogeny of lobose amoebae based on actin and small-subunit ribosomal RNA genes.
Molecular biology and evolution 2003;20(11):1881-6.
2003: Jan Pawlowski; Maria Holzmann; Cédric Berney; José Fahrni; Andrew J Gooday; Tomas Cedhagen; Andrea Habura; Samuel S Bowser
The evolution of early Foraminifera.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(20):11494-8.
2003: Maria Holzmann; Andrea Habura; Hannah Giles; Samuel S Bowser; Jan Pawlowski
Freshwater foraminiferans revealed by analysis of environmental DNA samples.
The Journal of eukaryotic microbiology 2003;50(2):135-9.
2003: Cédric Berney; Jan Pawlowski
Revised small subunit rRNA analysis provides further evidence that Foraminifera are related to Cercozoa.
Journal of molecular evolution 2003;57 Suppl 1():S120-7.
2003: John M Archibald; David Longet; Jan Pawlowski; Patrick J Keeling
A novel polyubiquitin structure in Cercozoa and Foraminifera: evidence for a new eukaryotic supergroup.
Molecular biology and evolution 2003;20(1):62-6.
2002: Fabien Burki; Cédric Berney; Jan Pawlowski
Phylogenetic position of Gromia oviformis Dujardin inferred from nuclear-encoded small subunit ribosomal DNA.
Protist 2002;153(3):251-60.
2001: Ignacio Bolivar; José Fahrni; Alexey Smirnov; Jan Pawlowski
SSU rRNA-based phylogenetic position of the genera Amoeba and Chaos (Lobosea, Gymnamoebia): the origin of gymnamoebae revisited.
Molecular biology and evolution 2001;18(12):2306-14.
2001: R Meisterfeld; Maria Holzmann; Jan Pawlowski
Morphological and molecular characterization of a new terrestrial allogromiid species: Edaphoallogromia australica gen. et spec. nov. (Foraminifera) from Northern Queensland (Australia).
Protist 2001;152(3):185-92.
2001: Jan Pawlowski; Maria Holzmann; José Fahrni; Xavier Pochon; John J Lee
Molecular identification of algal endosymbionts in large miliolid Foraminifera: 2. Dinofiagellates.
The Journal of eukaryotic microbiology 2001;48(3):368-73.
2001: Jan Pawlowski; Maria Holzmann; José Fahrni; P Hallock
Molecular identification of algal endosymbionts in large miliolid foraminifera: 1. Chlorophytes.
The Journal of eukaryotic microbiology 2001;48(3):362-7.
2000: O Jousson; Jan Pawlowski; L Zaninetti; F W Zechman; F Dini; G Di Guiseppe; R Woodfield; A Millar; A Meinesz
Invasive alga reaches California.
Nature 2000;408(6809):157-8.
2000: Cédric Berney; Jan Pawlowski; L Zaninetti
Elongation factor 1-alpha sequences do not support an early divergence of the Acoela.
Molecular biology and evolution 2000;17(7):1032-9.
2000: Dominique Gauchat; F Mazet; Cédric Berney; M Schummer; S Kreger; Jan Pawlowski; Brigitte Galliot
Evolution of Antp-class genes and differential expression of Hydra Hox/paraHox genes in anterior patterning.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(9):4493-8.
1999: O Jousson; Pierre Bartoli; Jan Pawlowski
Molecular identification of developmental stages in Opecoelidae (Digenea).
International journal for parasitology 1999;29(11):1853-8.
1999: Jan Pawlowski; Ignacio Bolivar; José Fahrni; C de Vargas; Samuel S Bowser
Molecular evidence that Reticulomyxa filosa is a freshwater naked foraminifer.
The Journal of eukaryotic microbiology 1999;46(6):612-7.
1999: C de Vargas; R Norris; L Zaninetti; S W Gibb; Jan Pawlowski
Molecular evidence of cryptic speciation in planktonic foraminifers and their relation to oceanic provinces.
Proceedings of the National Academy of Sciences of the United States of America 1999;96(6):2864-8.
1998: O Jousson; Pierre Bartoli; Jan Pawlowski
Molecular phylogeny of Mesometridae (Trematoda, Digenea) with its relation to morphological changes in parasites.
Parasite (Paris, France) 1998;5(4):365-9.
1998: O Jousson; Pierre Bartoli; L Zaninetti; Jan Pawlowski
Use of the ITS rDNA for elucidation of some life-cycles of Mesometridae (Trematoda, Digenea).
International journal for parasitology 1998;28(9):1403-11.
1998: C de Vargas; Jan Pawlowski
Molecular versus taxonomic rates of evolution in planktonic foraminifera.
Molecular phylogenetics and evolution 1998;9(3):463-9.
1997: C de Vargas; L Zaninetti; H Hilbrecht; Jan Pawlowski
Phylogeny and rates of molecular evolution of planktonic foraminifera: SSU rDNA sequences compared to the fossil record.
Journal of molecular evolution 1997;45(3):285-94.
1997: Jan Pawlowski; Ignacio Bolivar; José Fahrni; C de Vargas; M Gouy; L Zaninetti
Extreme differences in rates of molecular evolution of foraminifera revealed by comparison of ribosomal DNA sequences and the fossil record.
Molecular biology and evolution 1997;14(5):498-505.
1996: Jan Pawlowski; J I Montoya-Burgos; José Fahrni; J Wüest; L Zaninetti
Origin of the Mesozoa inferred from 18S rRNA gene sequences.
Molecular biology and evolution 1996;13(8):1128-32.
1996: Jan Pawlowski; Ignacio Bolivar; José Fahrni; T Cavalier-Smith; M Gouy
Early origin of foraminifera suggested by SSU rRNA gene sequences.
Molecular biology and evolution 1996;13(3):445-50.
1994: Jan Pawlowski; Ignacio Bolivar; J Guiard-Maffia; M Gouy
Phylogenetic position of foraminifera inferred from LSU rRNA gene sequences.
Molecular biology and evolution 1994;11(6):929-38.