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Jan Skov Pedersen

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Grethe Vestergaard Jensen; Reidar Lund; Michael Monkenbusch; Theyencheri Narayanan; Jérémie Gummel; Jan Skov Pedersen
Direct Observation of the Formation of Surfactant Micelles under Nonisothermal Conditions by Synchrotron SAXS.
Marie Krogsgaard; Jan Skov Pedersen; Manja A Behrens; Henrik Birkedal
Self-healing mussel-inspired multi-pH-responsive hydrogels.
Ryosuke Ogaki; Jan Skov Pedersen; Ole Zoffmann Andersen; Grethe Vestergaard Jensen; Kristian Kolind; David Christian Evar Kraft; Morten Foss
Temperature-induced ultradense PEG polyelectrolyte surface grafting provides effective long-term bioresistance against mammalian cells, serum, and whole blood.

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All Publications

2013: Grethe Vestergaard Jensen; Reidar Lund; Michael Monkenbusch; Theyencheri Narayanan; Jérémie Gummel; Jan Skov Pedersen
Direct Observation of the Formation of Surfactant Micelles under Nonisothermal Conditions by Synchrotron SAXS.
Journal of the American Chemical Society 2013;135(19):7214-22.
2013: Marie Krogsgaard; Jan Skov Pedersen; Manja A Behrens; Henrik Birkedal
Self-healing mussel-inspired multi-pH-responsive hydrogels.
Biomacromolecules 2013;14(2):297-301.
2012: Ryosuke Ogaki; Jan Skov Pedersen; Ole Zoffmann Andersen; Grethe Vestergaard Jensen; Kristian Kolind; David Christian Evar Kraft; Morten Foss
Temperature-induced ultradense PEG polyelectrolyte surface grafting provides effective long-term bioresistance against mammalian cells, serum, and whole blood.
Biomacromolecules 2012;13(11):3668-77.
2012: Christian Brix Folsted Andersen; Gregers R Andersen; Niels Højmark Andersen; Cristiano Luis Pinto de Oliveira; Hans-Petter Hersleth; Marianne Jensby Nielsen; Jan Skov Pedersen; Morten Torvund-Jensen; Søren K Moestrup
Structure of the haptoglobin-haemoglobin complex.
Nature 2012;489(7416):456-9.
2012: Stepan Shipovskov; Duncan S Sutherland; Leif Schauser; Flemming Besenbacher; Søren Vrønning Hoffmann; Cristiano L P Oliveira; Jan Skov Pedersen
Water-in-oil micro-emulsion enhances the secondary structure of a protein by confinement.
Chemphyschem : a European journal of chemical physics and physical chemistry 2012;13(13):3179-84.
2012: Antonello Calcutta; José M González-Ros; Christian M Jessen; Anders Malmendal; Cristiano L P Oliveira; Daniel E Otzen; Jan Skov Pedersen; Maria Lourdes Renart; Manja Annette Behrens; Niels Chr Nielsen
Mapping of unfolding states of integral helical membrane proteins by GPS-NMR and scattering techniques: TFE-induced unfolding of KcsA in DDM surfactant.
Biochimica et biophysica acta 2012;1818(9):2290-301.
2012: Jan Skov Pedersen; Cristiano L P Oliveira; Lise Arleth; Henriette Baun Hübschmann; Nicolai Kirkby; Søren Manniche; Hanne Mørck Nielsen
Structure of immune stimulating complex matrices and immune stimulating complexes in suspension determined by small-angle x-ray scattering.
Biophysical journal 2012;102(10):2372-80.
2012: Manja Annette Behrens; Anna-Lena Kjøniksen; Montse Lopez; Bo Nyström; Kaizheng Zhu; Jan Skov Pedersen
Structure and interactions of charged triblock copolymers studied by small-angle X-ray scattering: dependence on temperature and charge screening.
Langmuir : the ACS journal of surfaces and colloids 2012;28(2):1105-14.
2012: Manja A Behrens; Yangzi He; Cristiano L P Oliveira; Jan Skov Pedersen; Gregers R Andersen; Klaus H Nielsen
Structural analysis of RNA helicases with small-angle X-ray scattering.
Methods in enzymology 2012;511():191-212.
2011: Louise Carøe Vohlander Rasmussen; Cristiano L P Oliveira; Jan Skov Pedersen; Hans Uffe Sperling-Petersen; Kim Kusk Mortensen
Structural transitions of translation initiation factor IF2 upon GDPNP and GDP binding in solution.
Biochemistry 2011;50(45):9779-87.
2011: Manja A Behrens; Kenneth A Botkjaer; Paul J Declerck; Sumit Goswami; Jan K Jensen; Cristiano L P Oliveira; Cynthia B Peterson; Christine R Schar; Peter A Andreasen; Jan Skov Pedersen
Activation of the zymogen to urokinase-type plasminogen activator is associated with increased interdomain flexibility.
Journal of molecular biology 2011;411(2):417-29.
2011: Klaus H Nielsen; Manja A Behrens; Yangzi He; Cristiano L P Oliveira; Lars Sottrup Jensen; Søren V Hoffmann; Jan Skov Pedersen; Gregers R Andersen
Synergistic activation of eIF4A by eIF4B and eIF4G.
Nucleic acids research 2011;39(7):2678-89.
2011: Borislav Angelov; Angelina Angelova; Rada Mutafchieva; Sylviane Lesieur; Ulla Vainio; Vasil M Garamus; Grethe V Jensen; Jan Skov Pedersen
SAXS investigation of a cubic to a sponge (L3) phase transition in self-assembled lipid nanocarriers.
Physical chemistry chemical physics : PCCP 2011;13(8):3073-81.
2010: Marie Ø Pedersen; Katrine Mikkelsen; Manja A Behrens; Jan Skov Pedersen; Jan J Enghild; Troels Skrydstrup; Anders Malmendal; Niels Chr Nielsen
NMR reveals two-step association of Congo Red to amyloid β in low-molecular-weight aggregates.
The journal of physical chemistry. B 2010;114(48):16003-10.
2010: Mickaël Blaise; Marc Bailly; Mathieu Frechin; Manja Annette Behrens; Frédéric Fischer; Cristiano L P Oliveira; Hubert Dominique Becker; Jan Skov Pedersen; Søren Thirup; Daniel Kern
Crystal structure of a transfer-ribonucleoprotein particle that promotes asparagine formation.
The EMBO journal 2010;29(18):3118-29.
2010: G Roshan Deen; Jan Skov Pedersen
Nucleation of an oil phase in a nonionic microemulsion-containing chlorinated oil upon systematic temperature quench.
The journal of physical chemistry. B 2010;114(23):7769-76.
2010: Cristiano Luis Pinto Oliveira; Sissel Juul; Hanne Laerke Jørgensen; Bjarne Knudsen; David Tordrup; Francesco Oteri; Mattia Falconi; Jørn Koch; Alessandro Desideri; Jan Skov Pedersen; Felicie Faucon Andersen; Birgitta R Knudsen
Structure of nanoscale truncated octahedral DNA cages: variation of single-stranded linker regions and influence on assembly yields.
ACS nano 2010;4(3):1367-76.
2010: Jacob F Cramer; Camilla Gustafsen; Manja A Behrens; Cristiano L P Oliveira; Jan Skov Pedersen; Peder Madsen; Claus M Petersen; Søren S Thirup
GGA autoinhibition revisited.
Traffic (Copenhagen, Denmark) 2010;11(2):259-73.
2009: G Roshan Deen; Cristiano L P Oliveira; Jan Skov Pedersen
Phase behavior and kinetics of phase separation of a nonionic microemulsion of C12E5/water/1-chlorotetradecane upon a temperature quench.
The journal of physical chemistry. B 2009;113(20):7138-46.
2009: Ebbe S Andersen; Mingdong Dong; Morten M Nielsen; Kasper Jahn; Ramesh Subramani; Wael Mamdouh; Monika M Golas; Bjoern Sander; Holger Stark; Cristiano L P Oliveira; Jan Skov Pedersen; Victoria Birkedal; Flemming Besenbacher; Kurt V Gothelf; Jørgen Kjems
Self-assembly of a nanoscale DNA box with a controllable lid.
Nature 2009;459(7243):73-6.
2009: Cristiano L P Oliveira; Manja Annette Behrens; Jesper Pedersen; Kurt Erlacher; Daniel E Otzen; Jan Skov Pedersen
A SAXS study of glucagon fibrillation.
Journal of molecular biology 2009;387(1):147-61.
2009: Martina Keerl; Jan Skov Pedersen; Walter Richtering
Temperature sensitive copolymer microgels with nanophase separated structure.
Journal of the American Chemical Society 2009;131(8):3093-7.
2009: Nickolass Bitsch Schack; Cristiano L P Oliveira; Niall W G Young; Jan Skov Pedersen; Peter R Ogilby
Oxygen diffusion in cross-linked, ethanol-swollen poly(vinyl alcohol) gels: counter-intuitive results reflect microscopic heterogeneities.
Langmuir : the ACS journal of surfaces and colloids 2009;25(2):1148-53.
2008: Louise Carøe Vohlander Rasmussen; Cristiano L P Oliveira; Janni Mosgaard Jensen; Jan Skov Pedersen; Hans Uffe Sperling-Petersen; Kim Kusk Mortensen
Solution structure of C-terminal Escherichia coli translation initiation factor IF2 by small-angle X-ray scattering.
Biochemistry 2008;47(20):5590-8.
2008: G Roshan Deen; Jan Skov Pedersen
Phase behavior and microstructure of C12E5 nonionic microemulsions with chlorinated oils.
Langmuir : the ACS journal of surfaces and colloids 2008;24(7):3111-7.
2008: Romualdas Stapulionis; Cristiano L P Oliveira; Mikkel Carstensen Gjelstrup; Jan Skov Pedersen; Marianne Elisabet Hokland; Søren Vrønning Hoffmann; Knud Poulsen; Christian Jacobsen; Thomas Vorup-Jensen
Structural insight into the function of myelin basic protein as a ligand for integrin alpha M beta 2.
Journal of immunology (Baltimore, Md. : 1950) 2008;180(6):3946-56.
2008: Félicie Faucon Andersen; Bjarne Knudsen; Cristiano L P Oliveira; Rikke From Frøhlich; Dinna Barthold Krüger; Jörg Bungert; Mavis Agbandje-McKenna; Robert McKenna; Sissel Juul; Christopher Veigaard; Jørn Koch; John L Rubinstein; Bernt Guldbrandtsen; Marianne S Hede; Göran Karlsson; Anni H Andersen; Jan Skov Pedersen; Birgitta R Knudsen
Assembly and structural analysis of a covalently closed nano-scale DNA cage.
Nucleic acids research 2008;36(4):1113-9.
2008: Donna Karolchik; Robert M Kuhn; Robert Baertsch; Galt P Barber; Hiram Clawson; Mark Diekhans; Belinda Giardine; Rachel A Harte; Angie S Hinrichs; Fan Hsu; K M Kober; Webb Miller; Jan Skov Pedersen; Andy Pohl; Brian J Raney; Brooke L Rhead; Kate Rosenbloom; Kayla E Smith; M Stanke; A Thakkapallayil; Heather Trumbower; T Wang; Ann S Zweig; David Haussler; W James Kent
The UCSC Genome Browser Database: 2008 update.
Nucleic acids research 2008;36(Database issue):D773-9.
2007: Tosti J Mankelow; Nicholas Burton; Fanney O Stefansdottir; Frances A Spring; Stephen F Parsons; Jan Skov Pedersen; Cristiano L P Oliveira; Donna Lammie; Timothy Wess; Narla Mohandas; Joel Anne Chasis; R Leo Brady; David J Anstee
The Laminin 511/521-binding site on the Lutheran blood group glycoprotein is located at the flexible junction of Ig domains 2 and 3.
Blood 2007;110(9):3398-406.
2007: Dimitrios G Fatouros; G Roshan Deen; Lise Arleth; Bjorn Bergenstahl; Flemming Seier Nielsen; Jan Skov Pedersen; Anette Mullertz
Structural development of self nano emulsifying drug delivery systems (SNEDDS) during in vitro lipid digestion monitored by small-angle X-ray scattering.
Pharmaceutical research 2007;24(10):1844-53.
2007: Cornelia Sommer; G Roshan Deen; Jan Skov Pedersen; Pavel Strunz; Vasil M Garamus
Microemulsion droplets decorated by Brij700 block copolymer: phase behavior and structural investigation by SAXS and SANS.
Langmuir : the ACS journal of surfaces and colloids 2007;23(12):6544-53.
2007: Johan Ohlson; Jan Skov Pedersen; David Haussler; Marie Ohman
Editing modifies the GABA(A) receptor subunit alpha3.
RNA (New York, N.Y.) 2007;13(5):698-703.
2007: Flemming S Nielsen; Emilie Gibault; Helena Ljusberg-Wahren; Lise Arleth; Jan Skov Pedersen; Anette Müllertz
Characterization of prototype self-nanoemulsifying formulations of lipophilic compounds.
Journal of pharmaceutical sciences 2007;96(4):876-92.
2007: Dong Mingdong; Sailong Xu; Cristiano L P Oliveira; Jan Skov Pedersen; Steffen Thiel; Flemming Besenbacher; Thomas Vorup-Jensen
Conformational changes in mannan-binding lectin bound to ligand surfaces.
Journal of immunology (Baltimore, Md. : 1950) 2007;178(5):3016-22.
2007: Lise Arleth; Birgitta Svensson; Kell Mortensen; Jan Skov Pedersen; Ulf Olsson
Block-copolymer micro-emulsion with solvent-induced segregation.
Langmuir : the ACS journal of surfaces and colloids 2007;23(4):2117-25.
2007: Robert M Kuhn; Donna Karolchik; Ann S Zweig; Heather Trumbower; Daryl J Thomas; A Thakkapallayil; Charles W Sugnet; M Stanke; Kayla E Smith; Adam Siepel; Kate Rosenbloom; Brooke L Rhead; Brian J Raney; Andy Pohl; Jan Skov Pedersen; Fan Hsu; Angie S Hinrichs; Rachel A Harte; Mark Diekhans; Hiram Clawson; Gill Bejerano; Galt P Barber; Robert Baertsch; David Haussler; W James Kent
The UCSC genome browser database: update 2007.
Nucleic acids research 2007;35(Database issue):D668-73.
2006: Katherine S Pollard; Sofie R Salama; Bryan King; Andrew D Kern; Tim Dreszer; Sol Katzman; Adam Siepel; Jan Skov Pedersen; Gill Bejerano; Robert Baertsch; Kate Rosenbloom; W James Kent; David Haussler
Forces shaping the fastest evolving regions in the human genome.
PLoS genetics 2006;2(10):e168.
2006: Christian B F Andersen; Thomas Becker; Michael Blau; Monika Anand; Mario Halic; Bharvi Balar; Thorsten Mielke; Thomas Boesen; Jan Skov Pedersen; Christian M T Spahn; Terri Goss Kinzy; Gregers R Andersen; Roland Beckmann
Structure of eEF3 and the mechanism of transfer RNA release from the E-site.
Nature 2006;443(7112):663-8.
2006: Christian B F Andersen; Lionel Ballut; Jesper S Johansen; Hala Chamieh; Klaus H Nielsen; Cristiano L P Oliveira; Jan Skov Pedersen; Bertrand Séraphin; Hervé Le Hir; Gregers R Andersen
Structure of the exon junction core complex with a trapped DEAD-box ATPase bound to RNA.
Science (New York, N.Y.) 2006;313(5795):1968-72.
2006: Katherine S Pollard; Sofie R Salama; Nelle Lambert; Marie-Alexandra Lambot; Sandra Coppens; Jan Skov Pedersen; Sol Katzman; Bryan King; Courtney Onodera; Adam Siepel; Andrew D Kern; Colette Dehay; Haller Igel; Manuel Ares; Pierre Vanderhaeghen; David Haussler
An RNA gene expressed during cortical development evolved rapidly in humans.
Nature 2006;443(7108):167-72.
2006: Jan Skov Pedersen; Gill Bejerano; Adam Siepel; Kate Rosenbloom; Kerstin Lindblad-Toh; Eric S Lander; W James Kent; Webb Miller; David Haussler
Identification and classification of conserved RNA secondary structures in the human genome.
PLoS computational biology 2006;2(4):e33.
2006: Angie S Hinrichs; Donna Karolchik; Robert Baertsch; Galt P Barber; Gill Bejerano; Hiram Clawson; Mark Diekhans; Terrence S Furey; Rachel A Harte; Fan Hsu; J Hillman-Jackson; Robert M Kuhn; Jan Skov Pedersen; Andy Pohl; Brian J Raney; Kate Rosenbloom; Adam Siepel; Kayla E Smith; Charles W Sugnet; A Sultan-Qurraie; Daryl J Thomas; Heather Trumbower; RJ Weber; M Weirauch; Ann S Zweig; David Haussler; W James Kent
The UCSC Genome Browser Database: update 2006.
Nucleic acids research 2006;34(Database issue):D590-8.
2005: Adam Siepel; Gill Bejerano; Jan Skov Pedersen; Angie S Hinrichs; Minmei Hou; Kate Rosenbloom; Hiram Clawson; John Spieth; LaDeana W Hillier; Stephen Richards; George M Weinstock; Richard K Wilson; Richard A Gibbs; W James Kent; Webb Miller; David Haussler
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes.
Genome research 2005;15(8):1034-50.
2005: Cornelia Sommer; Jan Skov Pedersen; Vasil M Garamus
Structure and interactions of block copolymer micelles of Brij 700 studied by combining small-angle X-ray and neutron scattering.
Langmuir : the ACS journal of surfaces and colloids 2005;21(6):2137-49.
2004: Jan Skov Pedersen; Roald Forsberg; Irmtraud Margret Meyer; Jotun Hein
An evolutionary model for protein-coding regions with conserved RNA structure.
Molecular biology and evolution 2004;21(10):1913-22.
2004: Cornelia Sommer; Jan Skov Pedersen; Paul C Stein
Apparent Specific Volume Measurements of Poly(ethylene oxide), Poly(butylene oxide), Poly(propylene oxide), and Octadecyl Chains in the Micellar State as a Function of Temperature.
The journal of physical chemistry. B 2004;108(20):6242-9.
2004: Jan Skov Pedersen; Irmtraud Margret Meyer; Roald Forsberg; Peter Simmonds; Jotun Hein
A comparative method for finding and folding RNA secondary structures within protein-coding regions.
Nucleic acids research 2004;32(16):4925-36.
2003: Rita Carrotta; Lise Arleth; Jan Skov Pedersen; Rogert Bauer
Small-angle x-ray scattering studies of metastable intermediates of beta-lactoglobulin isolated after heat-induced aggregation.
Biopolymers 2003;70(3):377-90.
2003: Jan Skov Pedersen; Jotun Hein
Gene finding with a hidden Markov model of genome structure and evolution.
Bioinformatics (Oxford, England) 2003;19(2):219-27.