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Roger Perkins

Research Profile

Devices

Oligonucleotide Array Sequence Analysis

Concepts & Ideas

Genes & Molecular Sequences

Single Nucleotide Polymorphism

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Software

Physiology

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Genome Wide Association Studies

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Publications

TOP 3
Huixiao Hong; Nadereh Jafari; Wendell D Jones; Christophe G Lambert; Simon M Lin; Jie Liu; Kelci Miclaus; Baitang Ning; Kyunghee Park; Roger Perkins; Wendy Czika; Hong Fang; Weigong Ge; Federico Goodsaid; Bridgett Green; Tao Han; Zhenqiang Su; Weida Tong; Silvia C Vega; Russell D Wolfinger; Lei Xu; Li Zhang; Leming Shi
Technical reproducibility of genotyping SNP arrays used in genome-wide association studies.
Huixiao Hong; Leming Shi; Z Su; W Ge; W D Jones; Wendy Czika; K Miclaus; C G Lambert; S C Vega; J Zhang; Baitang Ning; J Liu; B Green; L Xu; Hong Fang; Roger Perkins; S M Lin; N Jafari; K Park; T Ahn; M Chierici; C Furlanello; L Zhang; Russell D Wolfinger; Federico M Goodsaid; Weida Tong
Assessing sources of inconsistencies in genotypes and their effects on genome-wide association studies with HapMap samples.
Huixiao Hong; Zhenqiang Su; Weigong Ge; Leming Shi; Roger Perkins; Hong Fang; Donna Mendrick; Weida Tong
Evaluating variations of genotype calling: a potential source of spurious associations in genome-wide association studies.

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All Publications

2012: Huixiao Hong; Nadereh Jafari; Wendell D Jones; Christophe G Lambert; Simon M Lin; Jie Liu; Kelci Miclaus; Baitang Ning; Kyunghee Park; Roger Perkins; Wendy Czika; Hong Fang; Weigong Ge; Federico Goodsaid; Bridgett Green; Tao Han; Zhenqiang Su; Weida Tong; Silvia C Vega; Russell D Wolfinger; Lei Xu; Li Zhang; Leming Shi
Technical reproducibility of genotyping SNP arrays used in genome-wide association studies.
PloS one 2012;7(9):e44483.
2010: Huixiao Hong; Leming Shi; Z Su; W Ge; W D Jones; Wendy Czika; K Miclaus; C G Lambert; S C Vega; J Zhang; Baitang Ning; J Liu; B Green; L Xu; Hong Fang; Roger Perkins; S M Lin; N Jafari; K Park; T Ahn; M Chierici; C Furlanello; L Zhang; Russell D Wolfinger; Federico M Goodsaid; Weida Tong
Assessing sources of inconsistencies in genotypes and their effects on genome-wide association studies with HapMap samples.
The pharmacogenomics journal 2010;10(4):364-74.
2010: Huixiao Hong; Zhenqiang Su; Weigong Ge; Leming Shi; Roger Perkins; Hong Fang; Donna Mendrick; Weida Tong
Evaluating variations of genotype calling: a potential source of spurious associations in genome-wide association studies.
Journal of genetics 2010;89(1):55-64.
2010: Don Ding; Lei Xu; Hong Fang; Huixiao Hong; Roger Perkins; Steve Harris; Edward D Bearden; Leming Shi; Weida Tong
The EDKB: an established knowledge base for endocrine disrupting chemicals.
BMC bioinformatics 2010;11 Suppl 6():S5.
2009: Huixiao Hong; Qilong Hong; Roger Perkins; Leming Shi; Hong Fang; Zhenqiang Su; Yvonne Dragan; James C Fuscoe; Weida Tong
The accurate prediction of protein family from amino acid sequence by measuring features of sequence fragments.
Journal of computational biology : a journal of computational molecular cell biology 2009;16(12):1671-88.
2009: Xiaohui Fan; Hong Fang; Huixiao Hong; Roger Perkins; Leming Shi; Weida Tong
Correlation analysis of external RNA controls reveals its utility for assessment of microarray assay.
Analytical biochemistry 2009;385(2):203-7.
2008: Zhenqiang Su; Huixiao Hong; Hong Fang; Leming Shi; Roger Perkins; Weida Tong
Very Important Pool (VIP) genes--an application for microarray-based molecular signatures.
BMC bioinformatics 2008;9 Suppl 9():S9.
2008: Huixiao Hong; Zhenqiang Su; Weigong Ge; Leming Shi; Roger Perkins; Hong Fang; Joshua Xu; James J Chen; Tao Han; Jim Kaput; James C Fuscoe; Weida Tong
Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples.
BMC bioinformatics 2008;9 Suppl 9():S17.
2006: Weida Tong; Hong Fang; Qian Xie; Huixiao Hong; Leming Shi; Roger Perkins; Uwe Scherf; Federico M Goodsaid; Felix Frueh
Gaining Confidence on Molecular Classification through Consensus Modeling and Validation.
Toxicology mechanisms and methods 2006;16(2-3):59-68.
2006: Hongmei Sun; Hong Fang; Tao Chen; Roger Perkins; Weida Tong
GOFFA: gene ontology for functional analysis--a FDA gene ontology tool for analysis of genomic and proteomic data.
BMC bioinformatics 2006;7 Suppl 2():S23.
2005: Huixiao Hong; Weida Tong; Qian Xie; Hong Fang; Roger Perkins
An in silico ensemble method for lead discovery: decision forest.
SAR and QSAR in environmental research 2005;16(4):339-47.
2004: Weida Tong; Qian Xie; Huixiao Hong; Leming Shi; Hong Fang; Roger Perkins; Emanuel F Petricoin
Using decision forest to classify prostate cancer samples on the basis of SELDI-TOF MS data: assessing chance correlation and prediction confidence.
Environmental health perspectives 2004;112(16):1622-7.
2004: Huixiao Hong; Weida Tong; Roger Perkins; Hong Fang; Qian Xie; Leming Shi
Multiclass Decision Forest--a novel pattern recognition method for multiclass classification in microarray data analysis.
DNA and cell biology 2004;23(10):685-94.
2004: Weida Tong; Qian Xie; Huixiao Hong; Leming Shi; Hong Fang; Roger Perkins
Assessment of prediction confidence and domain extrapolation of two structure-activity relationship models for predicting estrogen receptor binding activity.
Environmental health perspectives 2004;112(12):1249-54.
2004: Weida Tong; Stephen Harris; Xiaoxi Cao; Hong Fang; Leming Shi; Hongmei Sun; James C Fuscoe; Angela Harris; Huixiao Hong; Qian Xie; Roger Perkins; Daniel A Casciano
Development of public toxicogenomics software for microarray data management and analysis.
Mutation research 2004;549(1-2):241-53.
2003: Weida Tong; Xiaoxi Cao; Stephen Harris; Hongmei Sun; Hong Fang; James C Fuscoe; Angela Harris; Huixiao Hong; Qian Xie; Roger Perkins; Leming Shi; Daniel A Casciano
ArrayTrack--supporting toxicogenomic research at the U.S. Food and Drug Administration National Center for Toxicological Research.
Environmental health perspectives 2003;111(15):1819-26.
2003: Weida Tong; WILLIAM J WELSH; Leming Shi; Hong Fang; Roger Perkins
Structure-activity relationship approaches and applications.
Environmental toxicology and chemistry / SETAC 2003;22(8):1680-95.
2003: Weida Tong; Huixiao Hong; Hong Fang; Qian Xie; Roger Perkins
Decision forest: combining the predictions of multiple independent decision tree models.
Journal of chemical information and computer sciences 2003;43(2):525-31.