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Jakob Pernthaler

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TOP 3
Michaela M Salcher; Thomas Posch; Jakob Pernthaler
In situ substrate preferences of abundant bacterioplankton populations in a prealpine freshwater lake.
Nicolas Derlon; Bettina Eugster; Nicolas Koch; Jakob Pernthaler; Thomas Posch; Wouter Pronk; Eberhard Morgenroth
Activity of metazoa governs biofilm structure formation and enhances permeate flux during Gravity-Driven Membrane (GDM) filtration.
Cecilia Alonso; Florencia Bertoglio; Daniel Conde; Claudia Piccini; Fernando Unrein; Jakob Pernthaler
Environmental dynamics as a structuring factor for microbial carbon utilization in a subtropical coastal lagoon.

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All Publications

2013: Michaela M Salcher; Thomas Posch; Jakob Pernthaler
In situ substrate preferences of abundant bacterioplankton populations in a prealpine freshwater lake.
The ISME journal 2013;7(5):896-907.
2013: Nicolas Derlon; Bettina Eugster; Nicolas Koch; Jakob Pernthaler; Thomas Posch; Wouter Pronk; Eberhard Morgenroth
Activity of metazoa governs biofilm structure formation and enhances permeate flux during Gravity-Driven Membrane (GDM) filtration.
Water research 2013;47(6):2085-95.
2013: Cecilia Alonso; Florencia Bertoglio; Daniel Conde; Claudia Piccini; Fernando Unrein; Jakob Pernthaler
Environmental dynamics as a structuring factor for microbial carbon utilization in a subtropical coastal lagoon.
Frontiers in microbiology 2013;4():14.
2012: Karolin Tischer; Michael Zeder; Hauke Harms; Rebecca Klug; Jakob Pernthaler; Martha Schattenhofer; Annelie Wendeberg
Fluorescence in situ hybridization (CARD-FISH) of microorganisms in hydrocarbon contaminated aquifer sediment samples.
Systematic and applied microbiology 2012;35(8):526-32.
2012: Ester M Eckert; Bettina Eugster; Thomas Posch; Michaela M Salcher; Jakob Pernthaler
Rapid successions affect microbial N-acetyl-glucosamine uptake patterns during a lacustrine spring phytoplankton bloom.
Environmental microbiology 2012;14(3):794-806.
2012: Karel Horňák; Thomas Posch; Michael Zeder; Judith F Blom; Jakob Pernthaler
Suboptimal light conditions negatively affect the heterotrophy of Planktothrix rubescens but are beneficial for accompanying Limnohabitans spp.
Environmental microbiology 2012;14(3):765-78.
2011: M Zeder; L Zeder; E Kohler; Jakob Pernthaler
A novel algorithm for the determination of bacterial cell volumes that is unbiased by cell morphology.
Microscopy and microanalysis : the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada 2011;17(5):799-809.
2011: Michaela M Salcher; Jakob Pernthaler; Thomas Posch
Seasonal bloom dynamics and ecophysiology of the freshwater sister clade of SAR11 bacteria 'that rule the waves' (LD12).
The ISME journal 2011;5(8):1242-52.
2011: Yayoi Takeuchi; Masayuki Ushio; Christian von Mering; Rie Shimizu-Inatsugi; Bibian Diway; Masaki J Kobayashi; Jakob Pernthaler; Michaela M Salcher; Kentaro K Shimizu
In situ enzyme activity in the dissolved and particulate fraction of the fluid from four pitcher plant species of the genus Nepenthes.
PloS one 2011;6(9):e25144.
2010: Laura Alonso-Sáez; Jarone Pinhassi; Jakob Pernthaler; Josep M Gasol
Leucine-to-carbon empirical conversion factor experiments: does bacterial community structure have an influence?
Environmental microbiology 2010;12(11):2988-97.
2010: Judith F Blom; Yannick S Zimmermann; Thomas Ammann; Jakob Pernthaler
Scent of danger: floc formation by a freshwater bacterium is induced by supernatants from a predator-prey coculture.
Applied and environmental microbiology 2010;76(18):6156-63.
2010: Judith F Blom; Karel Horňák; Karel Simek; Jakob Pernthaler
Aggregate formation in a freshwater bacterial strain induced by growth state and conspecific chemical cues.
Environmental microbiology 2010;12(9):2486-95.
2010: Samuel Chaffron; Hubert Rehrauer; Jakob Pernthaler; Christian von Mering
A global network of coexisting microbes from environmental and whole-genome sequence data.
Genome research 2010;20(7):947-59.
2010: Tanja Shabarova; Jakob Pernthaler
Karst pools in subsurface environments: collectors of microbial diversity or temporary residence between habitat types.
Environmental microbiology 2010;12(4):1061-74.
2010: Michael Zeder; Silke Van den Wyngaert; Oliver Köster; Kathrin M Felder; Jakob Pernthaler
Automated quantification and sizing of unbranched filamentous cyanobacteria by model-based object-oriented image analysis.
Applied and environmental microbiology 2010;76(5):1615-22.
2010: Judith F Blom; Jakob Pernthaler
Antibiotic effects of three strains of chrysophytes (Ochromonas, Poterioochromonas) on freshwater bacterial isolates.
FEMS microbiology ecology 2010;71(2):281-90.
2010: M Zeder; E Kohler; Jakob Pernthaler
Automated quality assessment of autonomously acquired microscopic images of fluorescently stained bacteria.
Cytometry. Part A : the journal of the International Society for Analytical Cytology 2010;77(1):76-85.
2009: Michael Zeder; Simone Peter; Tatiana Shabarova; Jakob Pernthaler
A small population of planktonic Flavobacteria with disproportionally high growth during the spring phytoplankton bloom in a prealpine lake.
Environmental microbiology 2009;11(10):2676-86.
2009: M Zeder; Jakob Pernthaler
Multispot live-image autofocusing for high-throughput microscopy of fluorescently stained bacteria.
Cytometry. Part A : the journal of the International Society for Analytical Cytology 2009;75(9):781-8.
2009: Martha Schattenhofer; Bernhard M Fuchs; Rudolf Amann; Mikhail V Zubkov; Glen A Tarran; Jakob Pernthaler
Latitudinal distribution of prokaryotic picoplankton populations in the Atlantic Ocean.
Environmental microbiology 2009;11(8):2078-93.
2009: Ulrike Buck; Hans-Peter Grossart; Rudolf Amann; Jakob Pernthaler
Substrate incorporation patterns of bacterioplankton populations in stratified and mixed waters of a humic lake.
Environmental microbiology 2009;11(7):1854-65.
2009: Silvia Schmidt; Judith F Blom; Jakob Pernthaler; Gabriele Berg; Adam Baldwin; Eshwar Mahenthiralingam; Leo Eberl
Production of the antifungal compound pyrrolnitrin is quorum sensing-regulated in members of the Burkholderia cepacia complex.
Environmental microbiology 2009;11(6):1422-37.
2009: Cecilia Alonso; Michael Zeder; Claudia Piccini; Daniel Conde; Jakob Pernthaler
Ecophysiological differences of betaproteobacterial populations in two hydrochemically distinct compartments of a subtropical lagoon.
Environmental microbiology 2009;11(4):867-76.
2008: Stefano Fazi; Stefano Amalfitano; Claudia Piccini; Annamaria Zoppini; Alberto Puddu; Jakob Pernthaler
Colonization of overlaying water by bacteria from dry river sediments.
Environmental microbiology 2008;10(10):2760-72.
2008: Michaela M Salcher; Jakob Pernthaler; Michael Zeder; Roland Psenner; Thomas Posch
Spatio-temporal niche separation of planktonic Betaproteobacteria in an oligo-mesotrophic lake.
Environmental microbiology 2008;10(8):2074-86.
2008: Elke Allers; Christina Niesner; Christian Wild; Jakob Pernthaler
Microbes enriched in seawater after addition of coral mucus.
Applied and environmental microbiology 2008;74(10):3274-8.
2007: Maria Vila-Costa; Jarone Pinhassi; Cecilia Alonso; Jakob Pernthaler; Rafel Simó
An annual cycle of dimethylsulfoniopropionate-sulfur and leucine assimilating bacterioplankton in the coastal NW Mediterranean.
Environmental microbiology 2007;9(10):2451-63.
2007: Elke Allers; Laura Gómez-Consarnau; Jarone Pinhassi; Josep M Gasol; Karel Simek; Jakob Pernthaler
Response of Alteromonadaceae and Rhodobacteriaceae to glucose and phosphorus manipulation in marine mesocosms.
Environmental microbiology 2007;9(10):2417-29.
2007: Stefano Fazi; Stefano Amalfitano; Ilaria Pizzetti; Jakob Pernthaler
Efficiency of fluorescence in situ hybridization for bacterial cell identification in temporary river sediments with contrasting water content.
Systematic and applied microbiology 2007;30(6):463-70.
2007: Cecilia Alonso; Falk Warnecke; Rudolf Amann; Jakob Pernthaler
High local and global diversity of Flavobacteria in marine plankton.
Environmental microbiology 2007;9(5):1253-66.
2007: Laura Alonso-Sáez; Vanessa Balagué; Elisabet L Sà; Olga Sánchez; José M González; Jarone Pinhassi; Ramon Massana; Jakob Pernthaler; Carlos Pedrós-Alió; Josep M Gasol
Seasonality in bacterial diversity in north-west Mediterranean coastal waters: assessment through clone libraries, fingerprinting and FISH.
FEMS microbiology ecology 2007;60(1):98-112.
2007: Annelie Pernthaler; Jakob Pernthaler
Fluorescence in situ hybridization for the identification of environmental microbes.
Methods in molecular biology (Clifton, N.J.) 2007;353():153-64.
2006: Cecilia Alonso; Jakob Pernthaler
Roseobacter and SAR11 dominate microbial glucose uptake in coastal North Sea waters.
Environmental microbiology 2006;8(11):2022-30.
2006: Claudia Piccini; Daniel Conde; Cecilia Alonso; Ruben Sommaruga; Jakob Pernthaler
Blooms of single bacterial species in a coastal lagoon of the southwestern Atlantic Ocean.
Applied and environmental microbiology 2006;72(10):6560-8.
2006: Cecilia Alonso; Jakob Pernthaler
Concentration-dependent patterns of leucine incorporation by coastal picoplankton.
Applied and environmental microbiology 2006;72(3):2141-7.
2005: Stefano Fazi; Stefano Amalfitano; Jakob Pernthaler; Alberto Puddu
Bacterial communities associated with benthic organic matter in headwater stream microhabitats.
Environmental microbiology 2005;7(10):1633-40.
2005: Falk Warnecke; Ruben Sommaruga; Raju Sekar; Julia S Hofer; Jakob Pernthaler
Abundances, identity, and growth state of actinobacteria in mountain lakes of different UV transparency.
Applied and environmental microbiology 2005;71(9):5551-9.
2005: Jakob Pernthaler; Rudolf Amann
Fate of heterotrophic microbes in pelagic habitats: focus on populations.
Microbiology and molecular biology reviews : MMBR 2005;69(3):440-61.
2005: Annelie Pernthaler; Jakob Pernthaler
Diurnal variation of cell proliferation in three bacterial taxa from coastal North Sea waters.
Applied and environmental microbiology 2005;71(8):4638-44.
2005: Jakob Pernthaler
Predation on prokaryotes in the water column and its ecological implications.
Nature reviews. Microbiology 2005;3(7):537-46.
2005: Gerhard J Herndl; Thomas Reinthaler; Eva Teira; Hendrik van Aken; Cornelius Veth; Annelie Pernthaler; Jakob Pernthaler
Contribution of Archaea to total prokaryotic production in the deep Atlantic Ocean.
Applied and environmental microbiology 2005;71(5):2303-9.
2005: Cecilia Alonso; Jakob Pernthaler
Incorporation of glucose under anoxic conditions by bacterioplankton from coastal North Sea surface waters.
Applied and environmental microbiology 2005;71(4):1709-16.
2005: Annelie Pernthaler; Jakob Pernthaler
Simultaneous fluorescence in situ hybridization of mRNA and rRNA for the detection of gene expression in environmental microbes.
Methods in enzymology 2005;397():352-71.
2004: Jakob Pernthaler; Eckart Zöllner; Falk Warnecke; Klaus Jürgens
Bloom of filamentous bacteria in a mesotrophic lake: identity and potential controlling mechanism.
Applied and environmental microbiology 2004;70(10):6272-81.
2004: Raju Sekar; Bernhard M Fuchs; Rudolf Amann; Jakob Pernthaler
Flow sorting of marine bacterioplankton after fluorescence in situ hybridization.
Applied and environmental microbiology 2004;70(10):6210-9.
2004: Eva Teira; Thomas Reinthaler; Annelie Pernthaler; Jakob Pernthaler; Gerhard J Herndl
Combining catalyzed reporter deposition-fluorescence in situ hybridization and microautoradiography to detect substrate utilization by bacteria and Archaea in the deep ocean.
Applied and environmental microbiology 2004;70(7):4411-4.
2004: Jörg Peplies; Stanley C K Lau; Jakob Pernthaler; Rudolf Amann; Frank Oliver Glöckner
Application and validation of DNA microarrays for the 16S rRNA-based analysis of marine bacterioplankton.
Environmental microbiology 2004;6(6):638-45.
2004: Falk Warnecke; Rudolf Amann; Jakob Pernthaler
Actinobacterial 16S rRNA genes from freshwater habitats cluster in four distinct lineages.
Environmental microbiology 2004;6(3):242-53.
2003: Ulrike Burkert; Falk Warnecke; Dieter Babenzien; Elke Zwirnmann; Jakob Pernthaler
Members of a readily enriched beta-proteobacterial clade are common in surface waters of a humic lake.
Applied and environmental microbiology 2003;69(11):6550-9.
2003: Raju Sekar; Annelie Pernthaler; Jakob Pernthaler; Falk Warnecke; Thomas Posch; Rudolf Amann
An improved protocol for quantification of freshwater Actinobacteria by fluorescence in situ hybridization.
Applied and environmental microbiology 2003;69(5):2928-35.
2003: Jakob Pernthaler; Annelie Pernthaler; Rudolf Amann
Automated enumeration of groups of marine picoplankton after fluorescence in situ hybridization.
Applied and environmental microbiology 2003;69(5):2631-7.
2003: Christine Beardsley; Jakob Pernthaler; Werner Wosniok; Rudolf Amann
Are readily culturable bacteria in coastal North Sea waters suppressed by selective grazing mortality?
Applied and environmental microbiology 2003;69(5):2624-30.
2002: Annelie Pernthaler; Jakob Pernthaler; Martha Schattenhofer; Rudolf Amann
Identification of DNA-synthesizing bacterial cells in coastal North Sea plankton.
Applied and environmental microbiology 2002;68(11):5728-36.
2002: Karel Simek; Jirí Nedoma; Jakob Pernthaler; Thomas Posch; John R Dolan
Altering the balance between bacterial production and protistan bacterivory triggers shifts in freshwater bacterial community composition.
Antonie van Leeuwenhoek 2002;81(1-4):453-63.
2002: Annelie Pernthaler; Jakob Pernthaler; Rudolf Amann
Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria.
Applied and environmental microbiology 2002;68(6):3094-101.
2002: Annelie Pernthaler; Christina M Preston; Jakob Pernthaler; Edward F DeLong; Rudolf Amann
Comparison of fluorescently labeled oligonucleotide and polynucleotide probes for the detection of pelagic marine bacteria and archaea.
Applied and environmental microbiology 2002;68(2):661-7.
2001: H Eilers; Jakob Pernthaler; Jörg Peplies; Frank Oliver Glöckner; Gunnar Gerdts; Rudolf Amann
Isolation of novel pelagic bacteria from the German bight and their seasonal contributions to surface picoplankton.
Applied and environmental microbiology 2001;67(11):5134-42.
2001: Annelie Pernthaler; Jakob Pernthaler; H Eilers; Rudolf Amann
Growth patterns of two marine isolates: adaptations to substrate patchiness?
Applied and environmental microbiology 2001;67(9):4077-83.
2001: Karel Simek; Jakob Pernthaler; Markus G Weinbauer; Karel Hornák; John R Dolan; Jirí Nedoma; Michal Masín; Rudolf Amann
Changes in bacterial community composition and dynamics and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic reservoir.
Applied and environmental microbiology 2001;67(6):2723-33.
2001: Jakob Pernthaler; Thomas Posch; Karel Simek; Jaroslav Vrba; Annelie Pernthaler; Frank Oliver Glöckner; Ulrich Nübel; Roland Psenner; Rudolf Amann
Predator-specific enrichment of actinobacteria from a cosmopolitan freshwater clade in mixed continuous culture.
Applied and environmental microbiology 2001;67(5):2145-55.
2000: Frank Oliver Glöckner; E Zaichikov; N Belkova; L Denissova; Jakob Pernthaler; Annelie Pernthaler; Rudolf Amann
Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of actinobacteria.
Applied and environmental microbiology 2000;66(11):5053-65.
2000: H Eilers; Jakob Pernthaler; Rudolf Amann
Succession of pelagic marine bacteria during enrichment: a close look at cultivation-induced shifts.
Applied and environmental microbiology 2000;66(11):4634-40.
2000: H Eilers; Jakob Pernthaler; Frank Oliver Glöckner; Rudolf Amann
Culturability and In situ abundance of pelagic bacteria from the North Sea.
Applied and environmental microbiology 2000;66(7):3044-51.
1999: Klaus Jürgens; Jakob Pernthaler; S Schalla; R Amann
Morphological and compositional changes in a planktonic bacterial community in response to enhanced protozoan grazing.
Applied and environmental microbiology 1999;65(3):1241-50.