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Graziano Pesole

This is a preview profile on BiomedExperts - the first literature-based scientific social network. It brings the right researchers together and allows them to collaborate online. Collexis and Dell provide the BiomedExperts network of +1.5 Million pre-calculated profiles free of charge to researchers worldwide.

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Eukaryotic Cells

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Co-Publications
Name
51
Saccone, Cecilia
33
Liuni, Sabino
28
Gissi, Carmela
22
Grillo, Giorgio
16
Mignone, Flavio
11
Reyes, Aurelio
11
Attimonelli, Marcella
10
Lanave, Cecilia
10
Pavesi, Giulio
10
Licciulli, Flavio
9
Sbisà, Elisabetta
7
Mauri, Giancarlo
7
Larizza, Alessandra
6
Horner, David
6
D'Erchia, Anna Maria

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Publications

TOP 3
Mangiulli Marina; Valletti Alessio; Caratozzolo Mariano Francesco; Tullo Apollonia; Sbisà Elisabetta; Pesole Graziano; D'Erchia Anna Maria
Identification and functional characterization of two new transcriptional variants of the human p63 gene.
Zambelli Federico; Pesole Graziano; Pavesi Giulio
Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes.
Bonizzoni Paola; Mauri Giancarlo; Pesole Graziano; Picardi Ernesto; Pirola Yuri; Rizzi Raffaella
Detecting alternative gene structures from spliced ESTs: a computational approach.

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All Publications

2009: Mangiulli Marina; Valletti Alessio; Caratozzolo Mariano Francesco; Tullo Apollonia; Sbisà Elisabetta; Pesole Graziano; D'Erchia Anna Maria
Identification and functional characterization of two new transcriptional variants of the human p63 gene.
Nucleic acids research 2009;37(18):6092-104.
2009: Zambelli Federico; Pesole Graziano; Pavesi Giulio
Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes.
Nucleic acids research 2009;37(Web Server issue):W247-52.
2009: Bonizzoni Paola; Mauri Giancarlo; Pesole Graziano; Picardi Ernesto; Pirola Yuri; Rizzi Raffaella
Detecting alternative gene structures from spliced ESTs: a computational approach.
Journal of computational biology : a journal of computational molecular cell biology 2009;16(1):43-66.
2009: Riva Alberto; Pesole Graziano
A unique, consistent identifier for alternatively spliced transcript variants.
PloS one 2009;4(10):e7631.
2009: Rè Matteo; Pesole Graziano; Horner David S
Accurate discrimination of conserved coding and non-coding regions through multiple indicators of evolutionary dynamics.
BMC bioinformatics 2009;10():282.
2009: Creanza Teresa M; Horner David S; D'Addabbo Annarita; Maglietta Rosalia; Mignone Flavio; Ancona Nicola; Pesole Graziano
Statistical assessment of discriminative features for protein-coding and non coding cross-species conserved sequence elements.
BMC bioinformatics 2009;10 Suppl 6():S2.
2009: Picardi Ernesto; Mignone Flavio; Pesole Graziano
EasyCluster: a fast and efficient gene-oriented clustering tool for large-scale transcriptome data.
BMC bioinformatics 2009;10 Suppl 6():S10.
2009: Guffanti Alessandro; Iacono Michele; Pelucchi Paride; Kim Namshin; Soldà Giulia; Croft Larry J; Taft Ryan J; Rizzi Ermanno; Askarian-Amiri Marjan; Bonnal Raoul J; Callari Maurizio; Mignone Flavio; Pesole Graziano; Bertalot Giovanni; Bernardi Luigi Rossi; Albertini Alberto; Lee Christopher; Mattick John S; Zucchi Ileana; De Bellis Gianluca
A transcriptional sketch of a primary human breast cancer by 454 deep sequencing.
BMC genomics 2009;10():163.
2008: Gissi C; Iannelli F; Pesole G
Evolution of the mitochondrial genome of Metazoa as exemplified by comparison of congeneric species.
Heredity 2008;101(4):301-20.
2008: Pesole Graziano
What is a gene? An updated operational definition.
Gene 2008;417(1-2):1-4.
2008: Pavesi Giulio; Zambelli Federico; Caggese Corrado; Pesole Graziano
Exalign: a new method for comparative analysis of exon-intron gene structures.
Nucleic acids research 2008;36(8):e47.
2008: Castrignanò T; D'Antonio M; Anselmo A; Carrabino D; D'Onorio De Meo A; D'Erchia A M; Licciulli F; Mangiulli M; Mignone F; Pavesi G; Picardi E; Riva A; Rizzi R; Bonizzoni P; Pesole G
ASPicDB: a database resource for alternative splicing analysis.
Bioinformatics (Oxford, England) 2008;24(10):1300-4.
2008: Tartari Marzia; Gissi Carmela; Lo Sardo Valentina; Zuccato Chiara; Picardi Ernesto; Pesole Graziano; Cattaneo Elena
Phylogenetic comparison of huntingtin homologues reveals the appearance of a primitive polyQ in sea urchin.
Molecular biology and evolution 2008;25(2):330-8.
2008: Horner David S; Pirovano Walter; Pesole Graziano
Correlated substitution analysis and the prediction of amino acid structural contacts.
Briefings in bioinformatics 2008;9(1):46-56.
2008: Mignone Flavio; Anselmo Anna; Donvito Giacinto; Maggi Giorgio P; Grillo Giorgio; Pesole Graziano
Genome-wide identification of coding and non-coding conserved sequence tags in human and mouse genomes.
BMC genomics 2008;9():277.
2008: Vaccarelli Giovanna; Miccoli Maria C; Antonacci Rachele; Pesole Graziano; Ciccarese Salvatrice
Genomic organization and recombinational unit duplication-driven evolution of ovine and bovine T cell receptor gamma loci.
BMC genomics 2008;9():81.
2007: Iannelli Fabio; Pesole Graziano; Sordino Paolo; Gissi Carmela
Mitogenomics reveals two cryptic species in Ciona intestinalis.
Trends in genetics : TIG 2007;23(9):419-22.
2007: Maglietta R; Piepoli A; Catalano D; Licciulli F; Carella M; Liuni S; Pesole G; Perri F; Ancona N
Statistical assessment of functional categories of genes deregulated in pathological conditions by using microarray data.
Bioinformatics (Oxford, England) 2007;23(16):2063-72.
2007: Maglietta Rosalia; D'Addabbo Annarita; Piepoli Ada; Perri Francesco; Liuni Sabino; Pesole Graziano; Ancona Nicola
Selection of relevant genes in cancer diagnosis based on their prediction accuracy.
Artificial intelligence in medicine 2007;40(1):29-44.
2007: Porcelli Damiano; Barsanti Paolo; Pesole Graziano; Caggese Corrado
The nuclear OXPHOS genes in insecta: a common evolutionary origin, a common cis-regulatory motif, a common destiny for gene duplicates.
BMC evolutionary biology 2007;7():215.
2007: Pavesi Giulio; Pesole Graziano
Finding conserved gene order across multiple genomes.
Methods in molecular biology (Clifton, N.J.) 2007;396():111-9.
2007: Iannelli Fabio; Griggio Francesca; Pesole Graziano; Gissi Carmela
The mitochondrial genome of Phallusia mammillata and Phallusia fumigata (Tunicata, Ascidiacea): high genome plasticity at intra-genus level.
BMC evolutionary biology 2007;7():155.
2007: Sbisà Elisabetta; Catalano Domenico; Grillo Giorgio; Licciulli Flavio; Turi Antonio; Liuni Sabino; Pesole Graziano; De Grassi Anna; Caratozzolo Mariano Francesco; D'Erchia Anna Maria; Navarro Beatriz; Tullo Apollonia; Saccone Cecilia; Gisel Andreas
p53FamTaG: a database resource of human p53, p63 and p73 direct target genes combining in silico prediction and microarray data.
BMC bioinformatics 2007;8 Suppl 1():S20.
2007: Horner David S; Lefkimmiatis Konstantinos; Reyes Aurelio; Gissi Carmela; Saccone Cecilia; Pesole Graziano
Phylogenetic analyses of complete mitochondrial genome sequences suggest a basal divergence of the enigmatic rodent Anomalurus.
BMC evolutionary biology 2007;7():16.
2007: Pavesi Giulio; Zambelli Federico; Pesole Graziano
WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences.
BMC bioinformatics 2007;8():46.
2006: Pavesi Giulio; Pesole Graziano
Using Weeder for the discovery of conserved transcription factor binding sites.
Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.] 2006;Chapter 2():Unit 2.11.
2006: Pavesi Giulio; Mereghetti Paolo; Zambelli Federico; Stefani Marco; Mauri Giancarlo; Pesole Graziano
MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes.
Nucleic acids research 2006;34(Web Server issue):W566-70.
2006: Castrignanò Tiziana; Rizzi Raffaella; Talamo Ivano Giuseppe; De Meo Paolo D'Onorio; Anselmo Anna; Bonizzoni Paola; Pesole Graziano
ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization.
Nucleic acids research 2006;34(Web Server issue):W440-3.
2006: Bonizzoni Paola; Rizzi Raffaella; Pesole Graziano
Computational methods for alternative splicing prediction.
Briefings in functional genomics & proteomics 2006;5(1):46-51.
2006: Gissi Carmela; San Mauro Diego; Pesole Graziano; Zardoya Rafael
Mitochondrial phylogeny of Anura (Amphibia): a case study of congruent phylogenetic reconstruction using amino acid and nucleotide characters.
Gene 2006;366(2):228-37.
2006: Castrignanò Tiziana; De Meo Paolo D'Onorio; Grillo Giorgio; Liuni Sabino; Mignone Flavio; Talamo Ivano Giuseppe; Pesole Graziano
GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags.
Bioinformatics (Oxford, England) 2006;22(4):497-9.
2006: Frith Martin C; Bailey Timothy L; Kasukawa Takeya; Mignone Flavio; Kummerfeld Sarah K; Madera Martin; Sunkara Sirisha; Furuno Masaaki; Bult Carol J; Quackenbush John; Kai Chikatoshi; Kawai Jun; Carninci Piero; Hayashizaki Yoshihide; Pesole Graziano; Mattick John S
Discrimination of non-protein-coding transcripts from protein-coding mRNA.
RNA biology 2006;3(1):40-8.
2006: Rè Matteo; Mignone Flavio; Iacono Michele; Grillo Giorgio; Liuni Sabino; Pesole Graziano
A new strategy to identify novel genes and gene isoforms: Analysis of human chromosomes 15, 21 and 22.
Gene 2006;365():35-40.
2006: Gissi Carmela; Pesole Graziano; Cattaneo Elena; Tartari Marzia
Huntingtin gene evolution in Chordata and its peculiar features in the ascidian Ciona genus.
BMC genomics 2006;7():288.
2006: Ancona N; Maglietta R; Piepoli A; D'Addabbo A; Cotugno R; Savino M; Liuni S; Carella M; Pesole G; Perri F
On the statistical assessment of classifiers using DNA microarray data.
BMC bioinformatics 2006;7():387.
2005: Ancona Nicola; Maglietta Rosalia; D'Addabbo Annarita; Liuni Sabino; Pesole Graziano
Regularized Least Squares Cancer classifiers from DNA microarray data.
BMC bioinformatics 2005;6 Suppl 4():S2.
2005: De Grassi Anna; Caggese Corrado; D'Elia Domenica; Lanave Cecilia; Pesole Graziano; Saccone Cecilia
Evolution of nuclearly encoded mitochondrial genes in Metazoa.
Gene 2005;354():181-8.
2005: Dalla E; Mignone F; Verardo R; Marchionni L; Marzinotto S; Lazarevic D; Reid J F; Marzio R; Klaric E; Licastro D; Marcuzzi G; Gambetta R; Pierotti M A; Pesole G; Schneider C
Discovery of 342 putative new genes from the analysis of 5'-end-sequenced full-length-enriched cDNA human transcripts.
Genomics 2005;85(6):739-51.
2005: Iacono Michele; Mignone Flavio; Pesole Graziano
uAUG and uORFs in human and rodent 5'untranslated mRNAs.
Gene 2005;349():97-105.
2005: Regina Teresa M R; Picardi Ernesto; Lopez Loredana; Pesole Graziano; Quagliariello Carla
A novel additional group II intron distinguishes the mitochondrial rps3 gene in gymnosperms.
Journal of molecular evolution 2005;60(2):196-206.
2005: Sardiello Marco; Tripoli Gaetano; Romito Antonio; Minervini Crescenzio; Viggiano Luigi; Caggese Corrado; Pesole Graziano
Energy biogenesis: one key for coordinating two genomes.
Trends in genetics : TIG 2005;21(1):12-6.
2005: Tompa Martin; Li Nan; Bailey Timothy L; Church George M; De Moor Bart; Eskin Eleazar; Favorov Alexander V; Frith Martin C; Fu Yutao; Kent W James; Makeev Vsevolod J; Mironov Andrei A; Noble William Stafford; Pavesi Giulio; Pesole Graziano; Régnier Mireille; Simonis Nicolas; Sinha Saurabh; Thijs Gert; van Helden Jacques; Vandenbogaert Mathias; Weng Zhiping; Workman Christopher; Ye Chun; Zhu Zhou
Assessing computational tools for the discovery of transcription factor binding sites.
Nature biotechnology 2005;23(1):137-44.
2005: Boccia Angelo; Petrillo Mauro; di Bernardo Diego; Guffanti Alessandro; Mignone Flavio; Confalonieri Stefano; Luzi Lucilla; Pesole Graziano; Paolella Giovanni; Ballabio Andrea; Banfi Sandro
DG-CST (Disease Gene Conserved Sequence Tags), a database of human-mouse conserved elements associated to disease genes.
Nucleic acids research 2005;33(Database issue):D505-10.
2005: Mignone Flavio; Grillo Giorgio; Licciulli Flavio; Iacono Michele; Liuni Sabino; Kersey Paul J; Duarte Jorge; Saccone Cecilia; Pesole Graziano
UTRdb and UTRsite: a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs.
Nucleic acids research 2005;33(Database issue):D141-6.
2005: Bonizzoni Paola; Rizzi Raffaella; Pesole Graziano
ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequences.
BMC bioinformatics 2005;6():244.
2004: Gisel Andreas; Panetta Maria; Grillo Giorgio; Licciulli Vito Flavio; Liuni Sabino; Saccone Cecilia; Pesole Graziano
DNAfan: a software tool for automated extraction and analysis of user-defined sequence regions.
Bioinformatics (Oxford, England) 2004;20(18):3676-9.
2004: Pavesi Giulio; Mauri Giancarlo; Pesole Graziano
In silico representation and discovery of transcription factor binding sites.
Briefings in bioinformatics 2004;5(3):217-36.
2004: Castrignanò Tiziana; Canali Alessandro; Grillo Giorgio; Liuni Sabino; Mignone Flavio; Pesole Graziano
CSTminer: a web tool for the identification of coding and noncoding conserved sequence tags through cross-species genome comparison.
Nucleic acids research 2004;32(Web Server issue):W624-7.
2004: Pavesi Giulio; Mereghetti Paolo; Mauri Giancarlo; Pesole Graziano
Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes.
Nucleic acids research 2004;32(Web Server issue):W199-203.
2004: Pavesi G; Mauri G; Iannelli F; Gissi C; Pesole G
GeneSyn: a tool for detecting conserved gene order across genomes.
Bioinformatics (Oxford, England) 2004;20(9):1472-4.
2004: Horner David S; Pesole Graziano
Phylogenetic analyses: a brief introduction to methods and their application.
Expert review of molecular diagnostics 2004;4(3):339-50.
2004: Mignone Flavio; Horner David S; Pesole Graziano
WebVar: A resource for the rapid estimation of relative site variability from multiple sequence alignments.
Bioinformatics (Oxford, England) 2004;20(8):1331-3.
2004: Gissi Carmela; Iannelli Fabio; Pesole Graziano
Complete mtDNA of Ciona intestinalis reveals extensive gene rearrangement and the presence of an atp8 and an extra trnM gene in ascidians.
Journal of molecular evolution 2004;58(4):376-89.
2004: Reyes Aurelio; Gissi Carmela; Catzeflis Francois; Nevo Eviatar; Pesole Graziano; Saccone Cecilia
Congruent mammalian trees from mitochondrial and nuclear genes using Bayesian methods.
Molecular biology and evolution 2004;21(2):397-403.
2004: Pavesi Giulio; Mauri Giancarlo; Stefani Marco; Pesole Graziano
RNAProfile: an algorithm for finding conserved secondary structure motifs in unaligned RNA sequences.
Nucleic acids research 2004;32(10):3258-69.
2003: Polissi Alessandra; De Laurentis Walter; Zangrossi Sandro; Briani Federica; Longhi Vera; Pesole Graziano; Dehò Gianni
Changes in Escherichia coli transcriptome during acclimatization at low temperature.
Research in microbiology 2003;154(8):573-80.
2003: Gissi Carmela; Pesole Graziano
Transcript mapping and genome annotation of ascidian mtDNA using EST data.
Genome research 2003;13(9):2203-12.
2003: Mignone Flavio; Grillo Giorgio; Liuni Sabino; Pesole Graziano
Computational identification of protein coding potential of conserved sequence tags through cross-species evolutionary analysis.
Nucleic acids research 2003;31(15):4639-45.
2003: Grillo Giorgio; Licciulli Flavio; Liuni Sabino; Sbisà Elisabetta; Pesole Graziano
PatSearch: A program for the detection of patterns and structural motifs in nucleotide sequences.
Nucleic acids research 2003;31(13):3608-12.
2003: De Pietri Tonelli Davide; Mihailovich Marija; Schnurbus Raphaela; Pesole Graziano; Grohovaz Fabio; Zacchetti Daniele
Translational control of Scamper expression via a cell-specific internal ribosome entry site.
Nucleic acids research 2003;31(10):2508-13.
2003: Horner D S; Pesole G
The estimation of relative site variability among aligned homologous protein sequences.
Bioinformatics (Oxford, England) 2003;19(5):600-6.
2003: Saccone Cecilia; Caggese Corrado; D'Erchia Anna Maria; Lanave Cecilia; Oliva Marta; Pesole Graziano
Molecular clock and gene function.
Journal of molecular evolution 2003;57 Suppl 1():S277-85.
2002: Leach Richard E; Duniec-Dmuchowski Zofia M; Pesole Graziano; Tanaka Tetsuya S; Ko Minoru S H; Armant D Randall; Krawetz Stephen A
Identification, molecular characterization, and tissue expression of OVCOV1.
Mammalian genome : official journal of the International Mammalian Genome Society 2002;13(11):619-24.
2002: Saccone Cecilia; Barome Pierre Olivier; D'Erchia Anna Maria; D'Errico Ilenia; Pesole Graziano; Sbisà Elisabetta; Tullo Apollonia
Molecular strategies in Metazoan genomic evolution.
Gene 2002;300(1-2):195-201.
2002: De Giorgi Carla; Veronico Pasqua; De Luca Francesca; Natilla Angela; Lanave Cecilia; Pesole Graziano
Structural and evolutionary analysis of the ribosomal genes of the parasitic nematode Meloidogyne artiellia suggests its ancient origin.
Molecular and biochemical parasitology 2002;124(1-2):91-4.
2002: Larizza Alessandra; Makalowski Wojciech; Pesole Graziano; Saccone Cecilia
Evolutionary dynamics of mammalian mRNA untranslated regions by comparative analysis of orthologous human, artiodactyl and rodent gene pairs.
Computers & chemistry 2002;26(5):479-90.
2002: Saccone Cecilia; Gissi Carmela; Reyes Aurelio; Larizza Alessandra; Sbisà Elisabetta; Pesole Graziano
Mitochondrial DNA in metazoa: degree of freedom in a frozen event.
Gene 2002;286(1):3-12.
2002: Larizza Alessandra; Pesole Graziano; Reyes Aurelio; Sbisà Elisabetta; Saccone Cecilia
Lineage specificity of the evolutionary dynamics of the mtDNA D-loop region in rodents.
Journal of molecular evolution 2002;54(2):145-55.
2002: Pesole Graziano; Liuni Sabino; Grillo Giorgio; Licciulli Flavio; Mignone Flavio; Gissi Carmela; Saccone Cecilia
UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs. Update 2002.
Nucleic acids research 2002;30(1):335-40.
2002: Attimonelli Marcella; Catalano Domenico; Gissi Carmela; Grillo Giorgio; Licciulli Flavio; Liuni Sabino; Santamaria Monica; Pesole Graziano; Saccone Cecilia
MitoNuc: a database of nuclear genes coding for mitochondrial proteins. Update 2002.
Nucleic acids research 2002;30(1):172-3.
2002: Mignone Flavio; Pesole Graziano
rRNA-like sequences in human mRNAs.
Applied bioinformatics 2002;1(3):145-54.
2002: Mignone Flavio; Gissi Carmela; Liuni Sabino; Pesole Graziano
Untranslated regions of mRNAs.
Genome biology 2002;3(3):REVIEWS0004.
2001: Pesole G; Mignone F; Gissi C; Grillo G; Licciulli F; Liuni S
Structural and functional features of eukaryotic mRNA untranslated regions.
Gene 2001;276(1-2):73-81.
2001: Pavesi G; Mauri G; Pesole G
An algorithm for finding signals of unknown length in DNA sequences.
Bioinformatics (Oxford, England) 2001;17 Suppl 1():S207-14.
2000: Saccone C; Gissi C; Lanave C; Larizza A; Pesole G; Reyes A
Evolution of the mitochondrial genetic system: an overview.
Gene 2000;261(1):153-9.
2000: Pesole G; Gissi C; Grillo G; Licciulli F; Liuni S; Saccone C
Analysis of oligonucleotide AUG start codon context in eukariotic mRNAs.
Gene 2000;261(1):85-91.
2000: Reyes A; Pesole G; Saccone C
Long-branch attraction phenomenon and the impact of among-site rate variation on rodent phylogeny.
Gene 2000;259(1-2):177-87.
2000: Pesole G; Grillo G; Larizza A; Liuni S
The untranslated regions of eukaryotic mRNAs: structure, function, evolution and bioinformatic tools for their analysis.
Briefings in bioinformatics 2000;1(3):236-49.
2000: Gissi C; Reyes A; Pesole G; Saccone C
Lineage-specific evolutionary rate in mammalian mtDNA.
Molecular biology and evolution 2000;17(7):1022-31.
2000: Ristori G; Montesperelli C; Perna A; Cannoni S; Battistini L; Borsellino G; Riccio P; Pesole G; Chersi A; Pozzilli C; Buttinelli C; Salvetti M
Global immune disregulation in multiple sclerosis: from the adaptive response to the innate immunity.
Journal of neuroimmunology 2000;107(2):216-9.
2000: Reyes A; Gissi C; Pesole G; Catzeflis F M; Saccone C
Where do rodents fit? Evidence from the complete mitochondrial genome of Sciurus vulgaris.
Molecular biology and evolution 2000;17(6):979-83.
2000: Pesole G; Liuni S; D'Souza M
PatSearch: a pattern matcher software that finds functional elements in nucleotide and protein sequences and assesses their statistical significance.
Bioinformatics (Oxford, England) 2000;16(5):439-50.
2000: Ristori G; Salvetti M; Pesole G; Attimonelli M; Buttinelli C; Martin R; Riccio P
Compositional bias and mimicry toward the nonself proteome in immunodominant T cell epitopes of self and nonself antigens.
The FASEB journal : official publication of the Federation of American Societies for Experimental Biology 2000;14(3):431-8.
2000: Pesole G; Liuni S; Grillo G; Licciulli F; Larizza A; Makalowski W; Saccone C
UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs.
Nucleic acids research 2000;28(1):193-6.
2000: Pesole G; Gissi C; Catalano D; Grillo G; Licciulli F; Liuni S; Attimonelli M; Saccone C
MitoNuc and MitoAln: two related databases of nuclear genes coding for mitochondrial proteins.
Nucleic acids research 2000;28(1):163-5.
1999: Pesole G; Bernardi G; Saccone C
Isochore specificity of AUG initiator context of human genes.
FEBS letters 1999;464(1-2):60-2.
1999: Saccone C; De Giorgi C; Gissi C; Pesole G; Reyes A
Evolutionary genomics in Metazoa: the mitochondrial DNA as a model system.
Gene 1999;238(1):195-209.
1999: Pesole G; Liuni S
Internet resources for the functional analysis of 5' and 3' untranslated regions of eukaryotic mRNAs.
Trends in genetics : TIG 1999;15(9):378.
1999: D'erchia A M; Pesole G; Tullo A; Saccone C; Sbisà E
Guinea pig p53 mRNA: identification of new elements in coding and untranslated regions and their functional and evolutionary implications.
Genomics 1999;58(1):50-64.
1999: Pesole G; Gissi C; De Chirico A; Saccone C
Nucleotide substitution rate of mammalian mitochondrial genomes.
Journal of molecular evolution 1999;48(4):427-34.
1999: Pesole G; Liuni S; Grillo G; Ippedico M; Larizza A; Makalowski W; Saccone C
UTRdb: a specialized database of 5' and 3' untranslated regions of eukaryotic mRNAs.
Nucleic acids research 1999;27(1):188-91.
1998: Reyes A; Gissi C; Pesole G; Saccone C
Asymmetrical directional mutation pressure in the mitochondrial genome of mammals.
Molecular biology and evolution 1998;15(8):957-66.
1998: Pesole G; Liuni S; Grillo G; Belichard P; Trenkle T; Welsh J; McClelland M
GeneUp: a program to select short PCR primer pairs that occur in multiple members of sequence lists.
BioTechniques 1998;25(1):112-7, 120-3.
1998: Pesole G; Liuni S; Grillo G; Saccone C
UTRdb: a specialized database of 5'- and 3'-untranslated regions of eukaryotic mRNAs.
Nucleic acids research 1998;26(1):192-5.
1997: Sbisà E; Tanzariello F; Reyes A; Pesole G; Saccone C
Mammalian mitochondrial D-loop region structural analysis: identification of new conserved sequences and their functional and evolutionary implications.
Gene 1997;205(1-2):125-40.
1997: Pesole G; Liuni S; Grillo G; Saccone C
Structural and compositional features of untranslated regions of eukaryotic mRNAs.
Gene 1997;205(1-2):95-102.
1997: De Giorgi C; Martiradonna A; Pesole G; Saccone C
Lineage-specific evolution of echinoderm mitochondrial ATP synthase subunit 8.
Journal of bioenergetics and biomembranes 1997;29(3):233-9.
1996: Pesole G; Ceci L R; Gissi C; Saccone C; Quagliariello C
Evolution of the nad3-rps12 gene cluster in angiosperm mitochondria: comparison of edited and unedited sequences.
Journal of molecular evolution 1996;43(5):447-52.
1996: Sbisà E; Pesole G; Tullo A; Saccone C
The evolution of the RNase P- and RNase MRP-associated RNAs: phylogenetic analysis and nucleotide substitution rate.
Journal of molecular evolution 1996;43(1):46-57.
1996: D'Erchia A M; Gissi C; Pesole G; Saccone C; Arnason U
The guinea-pig is not a rodent.
Nature 1996;381(6583):597-600.
1996: Pesole G; Grillo G; Liuni S
Databases of mRNA untranslated regions for metazoa.
Computers & chemistry 1996;20(1):141-4.
1996: Grillo G; Attimonelli M; Liuni S; Pesole G
CLEANUP: a fast computer program for removing redundancies from nucleotide sequence databases.
Computer applications in the biosciences : CABIOS 1996;12(1):1-8.
1996: Pesole G; Attimonelli M; Saccone C
Linguistic analysis of nucleotide sequences: algorithms for pattern recognition and analysis of codon strategy.
Methods in enzymology 1996;266():281-94.
1995: Pesole G; Lotti M; Alberghina L; Saccone C
Evolutionary origin of nonuniversal CUGSer codon in some Candida species as inferred from a molecular phylogeny.
Genetics 1995;141(3):903-7.
1995: Saccone C; Gissi C; Lanave C; Pesole G
Molecular classification of living organisms.
Journal of molecular evolution 1995;40(3):273-9.
1995: Pesole G; Gissi C; Lanave C; Saccone C
Glutamine synthetase gene evolution in bacteria.
Molecular biology and evolution 1995;12(2):189-97.
1994: Cantatore P; Roberti M; Pesole G; Ludovico A; Milella F; Gadaleta M N; Saccone C
Evolutionary analysis of cytochrome b sequences in some Perciformes: evidence for a slower rate of evolution than in mammals.
Journal of molecular evolution 1994;39(6):589-97.
1994: Pesole G; Attimonelli M; Saccone C
Linguistic approaches to the analysis of sequence information.
Trends in biotechnology 1994;12(10):401-8.
1994: Pesole G; Gerardi A; di Jeso F; Saccone C
The peculiar evolution of apolipoprotein(a) in human and rhesus macaque.
Genetics 1994;136(1):255-60.
1993: Liuni S; Prunella N; Pesole G; D'Orazio T; Stella E; Distante A
SIMD parallelization of the WORDUP algorithm for detecting statistically significant patterns in DNA sequences.
Computer applications in the biosciences : CABIOS 1993;9(6):701-7.
1993: Prunella N; Liuni S; Attimonelli M; Pesole G
FASTPAT: a fast and efficient algorithm for string searching in DNA sequences.
Computer applications in the biosciences : CABIOS 1993;9(5):541-5.
1993: Saccone C; Lanave C; Pesole G
Time and biosequences.
Journal of molecular evolution 1993;37(2):154-9.
1992: Pesole G; Sbisá E; Preparata G; Saccone C
The evolution of the mitochondrial D-loop region and the origin of modern man.
Molecular biology and evolution 1992;9(4):587-98.
1992: Pesole G; Prunella N; Liuni S; Attimonelli M; Saccone C
WORDUP: an efficient algorithm for discovering statistically significant patterns in DNA sequences.
Nucleic acids research 1992;20(11):2871-5.
1992: Pesole G; Attimonelli M; Preparata G; Saccone C
A statistical method for detecting regions with different evolutionary dynamics in multialigned sequences.
Molecular phylogenetics and evolution 1992;1(2):91-6.
1991: Pesole G; Sbisá E; Mignotte F; Saccone C
The branching order of mammals: phylogenetic trees inferred from nuclear and mitochondrial molecular data.
Journal of molecular evolution 1991;33(6):537-42.
1991: Saccone C; Pesole G; Sbisá E
The main regulatory region of mammalian mitochondrial DNA: structure-function model and evolutionary pattern.
Journal of molecular evolution 1991;33(1):83-91.
1991: Saccone C; Pesole G; Kadenbach B
Evolutionary analysis of the nucleus-encoded subunits of mammalian cytochrome c oxidase.
European journal of biochemistry / FEBS 1991;195(1):151-6.
1991: Pesole G; Bozzetti M P; Lanave C; Preparata G; Saccone C
Glutamine synthetase gene evolution: a good molecular clock.
Proceedings of the National Academy of Sciences of the United States of America 1991;88(2):522-6.
1990: De Giorgi C; De Luca F; Stefanile C; Pesole G; Saccone C
Direct evidence that restriction endonucleases may under estimate the degree of divergence between molecules.
Current genetics 1990;18(2):167-8.
1990: Saccone C; Lanave C; Pesole G; Preparata G
Influence of base composition on quantitative estimates of gene evolution.
Methods in enzymology 1990;183():570-83.
1989: Saccone C; Pesole G; Preparata G
DNA microenvironments and the molecular clock.
Journal of molecular evolution 1989;29(5):407-11.
1988: Attimonelli M; Lanave C; Liuni S; Pesole G
MERGE: a software package for generating a single data-base starting from EMBL and GenBank collections.
Nucleic acids research 1988;16(5):1681-2.
1988: Pesole G; Attimonelli M; Liuni S
A backtranslation method based on codon usage strategy.
Nucleic acids research 1988;16(5):1715-28.

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