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Dietmar Pieper

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Chemicals & Drugs

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Sequence Analysis, DNA

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Publications

TOP 3
Ramiro Vilchez-Vargas; Agnes Waliczek; María Suárez-Diez; Ianina Conte; Robert Geffers; Howard Junca; Vanessa Sabrina Kaser; Monika Kralova; Dietmar H Pieper
Analysis of the microbial gene landscape and transcriptome for aromatic pollutants and alkane degradation using a novel internally calibrated microarray system.
Daiana de Lima-Morales; Michael Jarek; Ruy Jauregui; Diego Chaves-Moreno; Ramiro Vilchez-Vargas; Dietmar H Pieper
Draft Genome Sequence of Pseudomonas veronii Strain 1YdBTEX2.
Eberhard Schmidt; Dick B Janssen; Christian Mandt; Dietmar H Pieper; Walter Reineke
Degradation of chloroaromatics: structure and catalytic activities of wild-type chlorocatechol 2,3-dioxygenases and modified ones.

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2013: Ramiro Vilchez-Vargas; Agnes Waliczek; María Suárez-Diez; Ianina Conte; Robert Geffers; Howard Junca; Vanessa Sabrina Kaser; Monika Kralova; Dietmar H Pieper
Analysis of the microbial gene landscape and transcriptome for aromatic pollutants and alkane degradation using a novel internally calibrated microarray system.
Environmental microbiology 2013;15(4):1016-39.
2013: Daiana de Lima-Morales; Michael Jarek; Ruy Jauregui; Diego Chaves-Moreno; Ramiro Vilchez-Vargas; Dietmar H Pieper
Draft Genome Sequence of Pseudomonas veronii Strain 1YdBTEX2.
Genome announcements 2013;1(3):.
2013: Eberhard Schmidt; Dick B Janssen; Christian Mandt; Dietmar H Pieper; Walter Reineke
Degradation of chloroaromatics: structure and catalytic activities of wild-type chlorocatechol 2,3-dioxygenases and modified ones.
Environmental microbiology 2013;15(1):183-90.
2012: Macarena Marín; Iris Plumeier; Dietmar H Pieper
Degradation of 2,3-dihydroxybenzoate by a novel meta-cleavage pathway.
Journal of bacteriology 2012;194(15):3851-60.
2012: Danilo Pérez-Pantoja; Dietmar H Pieper; Michael Seeger; Loreine Agulló; Macarena Córdova; Raúl Donoso; Bernardo González
Genomic analysis of the potential for aromatic compounds biodegradation in Burkholderiales.
Environmental microbiology 2012;14(5):1091-117.
2012: Amélia Camarinha-Silva; Ruy Jáuregui; Karsten Becker; Melissa L Wos-Oxley; Dietmar H Pieper
Validating T-RFLP as a sensitive and high-throughput approach to assess bacterial diversity patterns in human anterior nares.
FEMS microbiology ecology 2012;79(1):98-108.
2011: Márcia Duarte; Frederico Ferreira-da-Silva; Luís Gales; Howard Junca; Heinrich Lünsdorf; Dietmar H Pieper; Olga C Nunes
Gulosibacter molinativorax ON4T molinate hydrolase, a novel cobalt-dependent amidohydrolase.
Journal of bacteriology 2011;193(20):5810-6.
2011: Margreet J Oosterkamp; Dietmar H Pieper; Caroline M Plugge; Hauke Smidt; Roxanne Tapia; Willem J H van Berkel; Teun Veuskens; David C Bruce; Hajnalka E Daligault; John C Detter; Jan Gerritse; Lynne A Goodwin; Cliff S Han; Loren J Hauser; Howard Junca; Miriam L Land; Alette A M Langenhoff; Alfons J M Stams
Genome sequences of Alicycliphilus denitrificans strains BC and K601T.
Journal of bacteriology 2011;193(18):5028-9.
2010: Ramiro Vilchez-Vargas; Howard Junca; Dietmar H Pieper
Metabolic networks, microbial ecology and 'omics' technologies: towards understanding in situ biodegradation processes.
Environmental microbiology 2010;12(12):3089-104.
2010: Melissa L Wos-Oxley; Iris Plumeier; Christof von Eiff; Stefan Taudien; Matthias Platzer; Ramiro Vilchez-Vargas; Karsten Becker; Dietmar H Pieper
A poke into the diversity and associations within human anterior nare microbial communities.
The ISME journal 2010;4(7):839-51.
2010: Macarena Marín; Danilo Pérez-Pantoja; Raul Donoso; Victor Wray; Bernardo González; Dietmar H Pieper
Modified 3-oxoadipate pathway for the biodegradation of methylaromatics in Pseudomonas reinekei MT1.
Journal of bacteriology 2010;192(6):1543-52.
2009: Macarena Marín; Dietmar H Pieper
Novel metal-binding site of Pseudomonas reinekei MT1 trans-dienelactone hydrolase.
Biochemical and biophysical research communications 2009;390(4):1345-8.
2009: Markus Kunze; Kay F Zerlin; Alexander Retzlaff; Jens O Pohl; Eberhard Schmidt; Dick B Janssen; Ramiro Vilchez-Vargas; Dietmar H Pieper; Walter Reineke
Degradation of chloroaromatics by Pseudomonas putida GJ31: assembled route for chlorobenzene degradation encoded by clusters on plasmid pKW1 and the chromosome.
Microbiology (Reading, England) 2009;155(Pt 12):4069-83.
2009: Beatriz Cámara; Patricia Nikodem; Piotr Bielecki; Roberto Bobadilla; Howard Junca; Dietmar H Pieper
Characterization of a gene cluster involved in 4-chlorocatechol degradation by Pseudomonas reinekei MT1.
Journal of bacteriology 2009;191(15):4905-15.
2009: Britta K Scheithauer; Melissa L Wos-Oxley; Björn Ferslev; Helmut Jablonowski; Dietmar H Pieper
Characterization of the complex bacterial communities colonizing biliary stents reveals a host-dependent diversity.
The ISME journal 2009;3(7):797-807.
2008: Beatriz Cámara; Macarena Marín; Michael Schlömann; Hans-Jürgen Hecht; Howard Junca; Dietmar H Pieper
trans-Dienelactone hydrolase from Pseudomonas reinekei MT1, a novel zinc-dependent hydrolase.
Biochemical and biophysical research communications 2008;376(2):423-8.
2008: Danilo Pérez-Pantoja; Rodrigo De la Iglesia; Dietmar H Pieper; Bernardo González
Metabolic reconstruction of aromatic compounds degradation from the genome of the amazing pollutant-degrading bacterium Cupriavidus necator JMP134.
FEMS microbiology reviews 2008;32(5):736-94.
2008: Hamdy A H Aly; Huu Nguyen; Victor Wray; Howard Junca; Dietmar H Pieper
Two angular dioxygenases contribute to the metabolic versatility of dibenzofuran-degrading Rhodococcus sp. strain HA01.
Applied and environmental microbiology 2008;74(12):3812-22.
2008: Dietmar H Pieper; Michael Seeger
Bacterial metabolism of polychlorinated biphenyls.
Journal of molecular microbiology and biotechnology 2008;15(2-3):121-38.
2007: Sad Halak; Tamara Basta; Sibylle Bürger; Matthias Contzen; Victor Wray; Dietmar H Pieper; Andreas Stolz
4-sulfomuconolactone hydrolases from Hydrogenophaga intermedia S1 and Agrobacterium radiobacter S2.
Journal of bacteriology 2007;189(19):6998-7006.
2007: Beatriz Cámara; Carsten Strömpl; Susanne Verbarg; Cathrin Spröer; Dietmar H Pieper; Brian J Tindall
Pseudomonas reinekei sp. nov., Pseudomonas moorei sp. nov. and Pseudomonas mohnii sp. nov., novel species capable of degrading chlorosalicylates or isopimaric acid.
International journal of systematic and evolutionary microbiology 2007;57(Pt 5):923-31.
2007: Robert Witzig; Hamdy A H Aly; Carsten Strömpl; Victor Wray; Howard Junca; Dietmar H Pieper
Molecular detection and diversity of novel diterpenoid dioxygenase DitA1 genes from proteobacterial strains and soil samples.
Environmental microbiology 2007;9(5):1202-18.
2007: Beatriz Cámara; Piotr Bielecki; Filip Kaminski; Vitor Martins dos Santos; Iris Plumeier; Patricia Nikodem; Dietmar H Pieper
A gene cluster involved in degradation of substituted salicylates via ortho cleavage in Pseudomonas sp. strain MT1 encodes enzymes specifically adapted for transformation of 4-methylcatechol and 3-methylmuconate.
Journal of bacteriology 2007;189(5):1664-74.
2006: Robert Witzig; Howard Junca; Hans-Jürgen Hecht; Dietmar H Pieper
Assessment of toluene/biphenyl dioxygenase gene diversity in benzene-polluted soils: links between benzene biodegradation and genes similar to those encoding isopropylbenzene dioxygenases.
Applied and environmental microbiology 2006;72(5):3504-14.
2006: Thomas Ledger; Dietmar H Pieper; Bernardo González
Chlorophenol hydroxylases encoded by plasmid pJP4 differentially contribute to chlorophenoxyacetic acid degradation.
Applied and environmental microbiology 2006;72(4):2783-92.
2006: Barbara Hendrickx; Howard Junca; Jolana Vosahlova; Antje Lindner; Irene Rüegg; Margarete Bucheli-Witschel; Folkert Faber; Thomas Egli; Margit Mau; Michael Schlömann; Maria Brennerova; Vladimir Brenner; Dietmar H Pieper; Eva M Top; Winnie Dejonghe; Leen Bastiaens; Dirk Springael
Alternative primer sets for PCR detection of genotypes involved in bacterial aerobic BTEX degradation: distribution of the genes in BTEX degrading isolates and in subsurface soils of a BTEX contaminated industrial site.
Journal of microbiological methods 2006;64(2):250-65.
2005: Katrin Pollmann; Victor Wray; Dietmar H Pieper
Chloromethylmuconolactones as critical metabolites in the degradation of chloromethylcatechols: recalcitrance of 2-chlorotoluene.
Journal of bacteriology 2005;187(7):2332-40.
2005: Dietmar H Pieper
Aerobic degradation of polychlorinated biphenyls.
Applied microbiology and biotechnology 2005;67(2):170-91.
2005: E Katsivela; Edward R B Moore; D Maroukli; Carsten Strömpl; Dietmar H Pieper; N Kalogerakis
Bacterial community dynamics during in-situ bioremediation of petroleum waste sludge in landfarming sites.
Biodegradation 2005;16(2):169-80.
2004: Howard Junca; Iris Plumeier; Hans-Jürgen Hecht; Dietmar H Pieper
Difference in kinetic behaviour of catechol 2,3-dioxygenase variants from a polluted environment.
Microbiology (Reading, England) 2004;150(Pt 12):4181-7.
2004: Markus Göbel; Oliver H Kranz; Stefan R Kaschabek; Eberhard Schmidt; Dietmar H Pieper; Walter Reineke
Microorganisms degrading chlorobenzene via a meta-cleavage pathway harbor highly similar chlorocatechol 2,3-dioxygenase-encoding gene clusters.
Archives of microbiology 2004;182(2-3):147-56.
2004: Dietmar H Pieper; Vítor A P Martins Dos Santos; Peter N Golyshin
Genomic and mechanistic insights into the biodegradation of organic pollutants.
Current opinion in biotechnology 2004;15(3):215-24.
2004: Howard Junca; Dietmar H Pieper
Functional gene diversity analysis in BTEX contaminated soils by means of PCR-SSCP DNA fingerprinting: comparative diversity assessment against bacterial isolates and PCR-DNA clone libraries.
Environmental microbiology 2004;6(2):95-110.
2003: Patricia Nikodem; Volker Hecht; Michael Schlömann; Dietmar H Pieper
New bacterial pathway for 4- and 5-chlorosalicylate degradation via 4-chlorocatechol and maleylacetate in Pseudomonas sp. strain MT1.
Journal of bacteriology 2003;185(23):6790-800.
2003: Howard Junca; Dietmar H Pieper
Amplified functional DNA restriction analysis to determine catechol 2,3-dioxygenase gene diversity in soil bacteria.
Journal of microbiological methods 2003;55(3):697-708.
2003: Luísa Barreiros; Balbina Nogales; Célia M Manaia; António C Silva Ferreira; Dietmar H Pieper; Maria A Reis; Olga C Nunes
A novel pathway for mineralization of the thiocarbamate herbicide molinate by a defined bacterial mixed culture.
Environmental microbiology 2003;5(10):944-53.
2003: Dirk F Wenderoth; P Rosenbrock; Wolf-Rainer Abraham; Dietmar H Pieper; Manfred G Höfle
Bacterial community dynamics during biostimulation and bioaugmentation experiments aiming at chlorobenzene degradation in groundwater.
Microbial ecology 2003;46(2):161-76.
2003: David B McKay; Matthias Prucha; Walter Reineke; Kenneth N Timmis; Dietmar H Pieper
Substrate specificity and expression of three 2,3-dihydroxybiphenyl 1,2-dioxygenases from Rhodococcus globerulus strain P6.
Journal of bacteriology 2003;185(9):2944-51.
2003: Katrin Pollmann; Victor Wray; Hans-Jürgen Hecht; Dietmar H Pieper
Rational engineering of the regioselectivity of TecA tetrachlorobenzene dioxygenase for the transformation of chlorinated toluenes.
Microbiology (Reading, England) 2003;149(Pt 4):903-13.
2003: Danilo Pérez-Pantoja; Thomas Ledger; Dietmar H Pieper; Bernardo González
Efficient turnover of chlorocatechols is essential for growth of Ralstonia eutropha JMP134(pJP4) in 3-chlorobenzoic acid.
Journal of bacteriology 2003;185(5):1534-42.
2002: Thomas Ledger; Dietmar H Pieper; Danilo Pérez-Pantoja; Bernardo González
Novel insights into the interplay between peripheral reactions encoded by xyl genes and the chlorocatechol pathway encoded by tfd genes for the degradation of chlorobenzoates by Ralstonia eutropha JMP134.
Microbiology (Reading, England) 2002;148(Pt 11):3431-40.
2002: Anke Skiba; Volker Hecht; Dietmar H Pieper
Formation of protoanemonin from 2-chloro-cis,cis-muconate by the combined action of muconate cycloisomerase and muconolactone isomerase.
Journal of bacteriology 2002;184(19):5402-9.
2002: Katrin Pollmann; Stefan R Kaschabek; Victor Wray; Walter Reineke; Dietmar H Pieper
Metabolism of dichloromethylcatechols as central intermediates in the degradation of dichlorotoluenes by Ralstonia sp. strain PS12.
Journal of bacteriology 2002;184(19):5261-74.
2002: Iris Plumeier; Danilo Pérez-Pantoja; Sabina Heim; Bernardo González; Dietmar H Pieper
Importance of different tfd genes for degradation of chloroaromatics by Ralstonia eutropha JMP134.
Journal of bacteriology 2002;184(15):4054-64.
2002: Nicole Trefault; Pascale Clément; Marlene Manzano; Dietmar H Pieper; Bernardo González
The copy number of the catabolic plasmid pJP4 affects growth of Ralstonia eutropha JMP134 (pJP4) on 3-chlorobenzoate.
FEMS microbiology letters 2002;212(1):95-100.
2002: Wolf-Rainer Abraham; Balbina Nogales; Peter N Golyshin; Dietmar H Pieper; Kenneth N Timmis
Polychlorinated biphenyl-degrading microbial communities in soils and sediments.
Current opinion in microbiology 2002;5(3):246-53.
2002: Dietmar H Pieper; Katrin Pollmann; Patricia Nikodem; Bernardo Gonzalez; Victor Wray
Monitoring key reactions in degradation of chloroaromatics by in situ (1)H nuclear magnetic resonance: solution structures of metabolites formed from cis-dienelactone.
Journal of bacteriology 2002;184(5):1466-70.
2001: Katrin Pollmann; S Beil; Dietmar H Pieper
Transformation of chlorinated benzenes and toluenes by Ralstonia sp. strain PS12 tecA (tetrachlorobenzene dioxygenase) and tecB (chlorobenzene dihydrodiol dehydrogenase) gene products.
Applied and environmental microbiology 2001;67(9):4057-63.
2001: Pascale Clément; Dietmar H Pieper; Bernardo González
Molecular characterization of a deletion/duplication rearrangement in tfd genes from Ralstonia eutropha JMP134(pJP4) that improves growth on 3-chlorobenzoic acid but abolishes growth on 2,4-dichlorophenoxyacetic acid.
Microbiology (Reading, England) 2001;147(Pt 8):2141-8.
2000: M Klemba; B Jakobs; Regina-Michaela Wittich; Dietmar H Pieper
Chromosomal integration of tcb chlorocatechol degradation pathway genes as a means of expanding the growth substrate range of bacteria to include haloaromatics.
Applied and environmental microbiology 2000;66(8):3255-61.
2000: Dietmar H Pieper; Walter Reineke
Engineering bacteria for bioremediation.
Current opinion in biotechnology 2000;11(3):262-70.
2000: Danilo Pérez-Pantoja; L Guzmán; Marlene Manzano; Dietmar H Pieper; Bernardo González
Role of tfdC(I)D(I)E(I)F(I) and tfdD(II)C(II)E(II)F(II) gene modules in catabolism of 3-chlorobenzoate by Ralstonia eutropha JMP134(pJP4).
Applied and environmental microbiology 2000;66(4):1602-8.
1999: Rafael Bosch; Edward R B Moore; Elena García-Valdés; Dietmar H Pieper
NahW, a novel, inducible salicylate hydroxylase involved in mineralization of naphthalene by Pseudomonas stutzeri AN10.
Journal of bacteriology 1999;181(8):2315-22.
1999: E Katsivela; V Wray; Dietmar H Pieper; Regina-Michaela Wittich
Initial reactions in the biodegradation of 1-chloro-4-nitrobenzene by a newly isolated bacterium, strain LW1.
Applied and environmental microbiology 1999;65(4):1405-12.
1999: S Beil; Kenneth N Timmis; Dietmar H Pieper
Genetic and biochemical analyses of the tec operon suggest a route for evolution of chlorobenzene degradation genes.
Journal of bacteriology 1999;181(1):341-6.
1998: S Beil; J R Mason; Kenneth N Timmis; Dietmar H Pieper
Identification of chlorobenzene dioxygenase sequence elements involved in dechlorination of 1,2,4,5-tetrachlorobenzene.
Journal of bacteriology 1998;180(21):5520-8.
1998: J Werwath; H A Arfmann; Dietmar H Pieper; Kenneth N Timmis; Regina-Michaela Wittich
Biochemical and genetic characterization of a gentisate 1, 2-dioxygenase from Sphingomonas sp. strain RW5.
Journal of bacteriology 1998;180(16):4171-6.
1997: S Beil; B Happe; Kenneth N Timmis; Dietmar H Pieper
Genetic and biochemical characterization of the broad spectrum chlorobenzene dioxygenase from Burkholderia sp. strain PS12--dechlorination of 1,2,4,5-tetrachlorobenzene.
European journal of biochemistry / FEBS 1997;247(1):190-9.
1997: M Prucha; A Peterseim; Dietmar H Pieper
Evidence for an isomeric muconolactone isomerase involved in the metabolism of 4-methylmuconolactone by Alcaligenes eutrophus JMP134.
Archives of microbiology 1997;168(1):33-8.
1995: R Blasco; Regina-Michaela Wittich; M Mallavarapu; K N Timmis; Dietmar H Pieper
From xenobiotic to antibiotic, formation of protoanemonin from 4-chlorocatechol by enzymes of the 3-oxoadipate pathway.
The Journal of biological chemistry 1995;270(49):29229-35.