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Matthias Platzer

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Stefan Heckmann; Jörg Fuchs; Katrin Kumke; Lu Ma; Jirí Macas; Pavel Neumann; Petr Novák; Matthias Platzer; Veit Schubert; Stefan Taudien; Andreas Houben
The holocentric species Luzula elegans shows interplay between centromere and large-scale genome organization.
Andreas Petzold; Christoph Englert; Marco Groth; Nils Hartmann; Steffen Priebe; Kathrin Reichwald; Dmitry Shagin; Stefan Taudien; Matthias Platzer
The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels.
Marius Felder; Andreas Petzold; Matthias Platzer; Alessandro Romualdi; Jürgen Sühnel; Gernot Glöckner
GenColors-based comparative genome databases for small eukaryotic genomes.

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All Publications

2013: Stefan Heckmann; Jörg Fuchs; Katrin Kumke; Lu Ma; Jirí Macas; Pavel Neumann; Petr Novák; Matthias Platzer; Veit Schubert; Stefan Taudien; Andreas Houben
The holocentric species Luzula elegans shows interplay between centromere and large-scale genome organization.
The Plant journal : for cell and molecular biology 2013;73(4):555-65.
2013: Andreas Petzold; Christoph Englert; Marco Groth; Nils Hartmann; Steffen Priebe; Kathrin Reichwald; Dmitry Shagin; Stefan Taudien; Matthias Platzer
The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels.
BMC genomics 2013;14():185.
2013: Marius Felder; Andreas Petzold; Matthias Platzer; Alessandro Romualdi; Jürgen Sühnel; Gernot Glöckner
GenColors-based comparative genome databases for small eukaryotic genomes.
Nucleic acids research 2013;41(Database issue):D692-9.
2012: Claudia Fritsch; Jochen Hampe; Alexander Herrmann; Klaus Huse; Michael Krawczak; Michael Nothnagel; Matthias Platzer; Stefan Schreiber; Frank Schumann; Karol Szafranski; Mario Brosch
Genome-wide search for novel human uORFs and N-terminal protein extensions using ribosomal footprinting.
Genome research 2012;22(11):2208-18.
2012: Mario Baumgart; Jessika Appelt; Marco Groth; Reinhard Guthke; Matthias Platzer; Steffen Priebe; Alessandro Cellerino
Age-dependent regulation of tumor-related microRNAs in the brain of the annual fish Nothobranchius furzeri.
Mechanisms of ageing and development 2012;133(5):226-33.
2012: Jeanette Kirschner; Christina Neuschl; Andreas Petzold; Matthias Platzer; Eileen Powalsky; Marco Böttger; Gudrun A Brockmann; Alessandro Cellerino; Christoph Englert; Andre Franke; Marco Groth; Nils Hartmann; Dmitry Shagin; David Weber; Lea Zielke; Kathrin Reichwald
Mapping of quantitative trait loci controlling lifespan in the short-lived fish Nothobranchius furzeri--a new vertebrate model for age research.
Aging cell 2012;11(2):252-61.
2012: Stefan Taudien; Karl Werdan; Andreas Wolf; Philip Rosenstiel; Gabor Gäbel; Karin Halina Greiser; Marco Groth; Robert Grützmann; Klaus Huse; Alexander Kluttig; Michael Krawczak; Oliver Kuss; Michael Nothnagel; Christian Pilarsky; Matthias Platzer
Association studies of the copy-number variable ß-defensin cluster on 8p23.1 in adenocarcinoma and chronic pancreatitis.
BMC research notes 2012;5():629.
2012: Liyan Ping; Matthias Platzer; Gaiping Wen; Nicolas Delaroque
Coevolution of aah: a dps-like gene with the host bacterium revealed by comparative genomic analysis.
TheScientificWorldJournal 2012;2012():504905.
2012: S Fluch; Dieter Kopecky; Siegfried Krainer; Marie Kubaláková; Andreas Petzold; Matthias Platzer; Stefan Taudien; Hana Simková; Maria Berenyi; Kornel Burg; Jaroslav Doležel; Tamas Lelley
Sequence composition and gene content of the short arm of rye (Secale cereale) chromosome 1.
PloS one 2012;7(2):e30784.
2011: Francis Parlange; Matthias Platzer; Hana Simková; Stefan Taudien; Thomas Wicker; James Breen; Jaroslav Doležel; Simone Oberhaensli; Beat Keller
A major invasion of transposable elements accounts for the large size of the Blumeria graminis f.sp. tritici genome.
Functional & integrative genomics 2011;11(4):671-7.
2011: A Dorn; K Janko; E Ng'oma; Matthias Platzer; M Polačik; Alessandro Cellerino; Kathrin Reichwald; Martin Reichard
Phylogeny, genetic variability and colour polymorphism of an emerging animal model: the short-lived annual Nothobranchius fishes from southern Mozambique.
Molecular phylogenetics and evolution 2011;61(3):739-49.
2011: Andrew J Heidel; Nicholas R Helps; Uwe John; Hajara M Lawal; Angelika A Noegel; Matthias Platzer; Francisco Rivero; Pauline Schaap; Christina Schilde; Michael Schleicher; Budi Tunggal; Ludwig Eichinger; Marius Felder; Gernot Glöckner
Phylogeny-wide analysis of social amoeba genomes highlights ancient origins for complex intercellular communication.
Genome research 2011;21(11):1882-91.
2011: Nils Hartmann; Claudia Lück; Matthias Platzer; Kathrin Reichwald; Michael Ristow; Sebastian Schmeisser; Eva Terzibasi; Ilka Wittig; Ulrich Brandt; Alessandro Cellerino; Stefan Dröse; Ulrike Gausmann; Michael Graf; Christin Hahn; Christoph Englert
Mitochondrial DNA copy number and function decrease with age in the short-lived fish Nothobranchius furzeri.
Aging cell 2011;10(5):824-31.
2011: Michael Nothnagel; Matthias Platzer; Stefan Schreiber; Reiner Siebert; Andreas Wolf; Alexander Herrmann; Michael Krawczak; Jochen Hampe
Technology-specific error signatures in the 1000 Genomes Project data.
Human genetics 2011;130(4):505-16.
2011: Thomas Wicker; Burkhard Steuernagel; Stefan Taudien; Hikmet Budak; Frédéric Choulet; Jaroslav Dolezel; Tzion Fahima; Catherine Feuillet; Heidrun Gundlach; Beat Keller; Marie Kubaláková; Mihaela Martis; Klaus F X Mayer; Matthias Platzer; Uwe Scholz; Hana Simková; Nils Stein
Frequent gene movement and pseudogene evolution is common to the large and complex genomes of wheat, barley, and their relatives.
The Plant cell 2011;23(5):1706-18.
2011: Klaus F X Mayer; Mihaela Martis; Pete E Hedley; Hana Simková; Hui Liu; Jenny A Morris; Burkhard Steuernagel; Stefan Taudien; Stephan Roessner; Heidrun Gundlach; Marie Kubaláková; Pavla Suchánková; Florent Murat; Marius Felder; Thomas Nussbaumer; Andreas Graner; Jerome Salse; Takashi Endo; Hiroaki Sakai; Tsuyoshi Tanaka; Takeshi Itoh; Kazuhiro Sato; Matthias Platzer; Takashi Matsumoto; Uwe Scholz; Jaroslav Dolezel; Robbie Waugh; Nils Stein
Unlocking the barley genome by chromosomal and comparative genomics.
The Plant cell 2011;23(4):1249-63.
2011: Marcel Kramer; Klaus Huse; Uwe Menzel; Oliver Backhaus; Philip Rosenstiel; Stefan Schreiber; Jochen Hampe; Matthias Platzer
Constant splice-isoform ratios in human lymphoblastoid cells support the concept of a splico-stat.
Genetics 2011;187(3):761-70.
2011: Stefan Taudien; Ruvini Ariyadasa; Marius Felder; Marco Groth; Klaus Fx Mayer; Andreas Petzold; Thomas Schmutzer; Uwe Scholz; Daniela Schulte; Nils Stein; Burkhard Steuernagel; Matthias Platzer
Sequencing of BAC pools by different next generation sequencing platforms and strategies.
BMC research notes 2011;4():411.
2011: Alexander Herrmann; Steve K Kotsopoulos; Michael Krawczak; Darren R Link; Idoia Martin-Guerrero; Michael Nothnagel; Peter Nürnberg; Jeff Olson; Matthias Platzer; Julia Richter; Stefan Schreiber; Reiner Siebert; Kathryn Stemshorn; Karol Szafranski; Jason Warner; Ole Ammerpohl; Andrea Haake; Jochen Hampe
Pipeline for large-scale microdroplet bisulfite PCR-based sequencing allows the tracking of hepitype evolution in tumors.
PloS one 2011;6(7):e21332.
2011: Stefanie Stepanow; Kathrin Reichwald; Klaus Huse; Ulrike Gausmann; Almut Nebel; Philip Rosenstiel; Martin Wabitsch; Pamela Fischer-Posovszky; Matthias Platzer
Allele-specific, age-dependent and BMI-associated DNA methylation of human MCHR1.
PloS one 2011;6(5):e17711.
2011: Stefan Taudien; Xinmin Zhang; Marius Felder; Marco Groth; Jochen Hampe; Klaus Huse; Andreas Petzold; Francesca Raffaelli; Philip Rosenstiel; Stefan Schreiber; Karol Szafranski; Matthias Platzer
Comprehensive assessment of sequence variation within the copy number variable defensin cluster on 8p23 by target enriched in-depth 454 sequencing.
BMC genomics 2011;12(1):243.
2011: Michael Nothnagel; Andreas Wolf; Alexander Herrmann; Karol Szafranski; Inga Vater; Mario Brosch; Klaus Huse; Reiner Siebert; Matthias Platzer; Jochen Hampe; Michael Krawczak
Statistical inference of allelic imbalance from transcriptome data.
Human mutation 2011;32(1):98-106.
2010: Thomas Hochmuth; Holger Niederkrüger; Christine Gernert; Alexander Siegl; Stefan Taudien; Matthias Platzer; Phillip Crews; Ute Hentschel; Jörn Piel
Linking chemical and microbial diversity in marine sponges: possible role for poribacteria as producers of methyl-branched fatty acids.
Chembiochem : a European journal of chemical biology 2010;11(18):2572-8.
2010: M Groth; C Wiegand; Karol Szafranski; Klaus Huse; M Kramer; Philip Rosenstiel; Stefan Schreiber; J Norgauer; Matthias Platzer
Both copy number and sequence variations affect expression of human DEFB4.
Genes and immunity 2010;11(6):458-66.
2010: Jana Schirmeyer; Karol Szafranski; Enrico Leipold; Christian Mawrin; Matthias Platzer; Stefan H Heinemann
A subtle alternative splicing event of the Na(V)1.8 voltage-gated sodium channel is conserved in human, rat, and mouse.
Journal of molecular neuroscience : MN 2010;41(2):310-4.
2010: Marcel Kramer; Oliver Backhaus; Philip Rosenstiel; Denise Horn; Eva Klopocki; Gerd Birkenmeier; Stefan Schreiber; Matthias Platzer; Jochen Hampe; Klaus Huse
Analysis of relative gene dosage and expression differences of the paralogs RABL2A and RABL2B by Pyrosequencing.
Gene 2010;455(1-2):1-7.
2010: Marcel Kramer; Janne Boeck; Daniela Reichenbach; Christoph Kaether; Stefan Schreiber; Matthias Platzer; Philip Rosenstiel; Klaus Huse
NOD2-C2 - a novel NOD2 isoform activating NF-kappaB in a muramyl dipeptide-independent manner.
BMC research notes 2010;3():224.
2010: Rileen Sinha; Thorsten Lenser; Niels Jahn; Ulrike Gausmann; Swetlana Friedel; Karol Szafranski; Klaus Huse; Philip Rosenstiel; Jochen Hampe; Stefan Schuster; Michael Hiller; Rolf Backofen; Matthias Platzer
TassDB2 - A comprehensive database of subtle alternative splicing events.
BMC bioinformatics 2010;11():216.
2010: Rileen Sinha; Andreas D Zimmer; Kathrin Bolte; Daniel Lang; Ralf Reski; Matthias Platzer; Stefan A Rensing; Rolf Backofen
Identification and characterization of NAGNAG alternative splicing in the moss Physcomitrella patens.
BMC plant biology 2010;10():76.
2010: Stefan Taudien; Marco Groth; Klaus Huse; Andreas Petzold; Karol Szafranski; Jochen Hampe; Philip Rosenstiel; Stefan Schreiber; Matthias Platzer
Haplotyping and copy number estimation of the highly polymorphic human beta-defensin locus on 8p23 by 454 amplicon sequencing.
BMC genomics 2010;11():252.
2009: Dario Riccardo Valenzano; Jeanette Kirschner; Roarke A Kamber; Elisa Zhang; David Weber; Alessandro Cellerino; Christoph Englert; Matthias Platzer; Kathrin Reichwald; Anne Brunet
Mapping loci associated with tail color and sex determination in the short-lived fish Nothobranchius furzeri.
Genetics 2009;183(4):1385-95.
2009: Stefanie Schindler; Monika Heiner; Matthias Platzer; Karol Szafranski
Comparison of methods for quantification of subtle splice variants.
Electrophoresis 2009;30(21):3674-81.
2009: Klaus F X Mayer; Stefan Taudien; Mihaela Martis; Hana Simková; Pavla Suchánková; Heidrun Gundlach; Thomas Wicker; Andreas Petzold; Marius Felder; Burkhard Steuernagel; Uwe Scholz; Andreas Graner; Matthias Platzer; Jaroslav Dolezel; Nils Stein
Gene content and virtual gene order of barley chromosome 1H.
Plant physiology 2009;151(2):496-505.
2009: Thomas Wicker; Stefan Taudien; Andreas Houben; Beat Keller; Andreas Graner; Matthias Platzer; Nils Stein
A whole-genome snapshot of 454 sequences exposes the composition of the barley genome and provides evidence for parallel evolution of genome size in wheat and barley.
The Plant journal : for cell and molecular biology 2009;59(5):712-22.
2009: Roman A Siddiqui; Ulrike Sauermann; Janine Altmüller; Elfriede Fritzer; Michael Nothnagel; Nina Dalibor; Jacques Fellay; Franz-Josef Kaup; Christiane Stahl-Hennig; Peter Nürnberg; Michael Krawczak; Matthias Platzer
X chromosomal variation is associated with slow progression to AIDS in HIV-1-infected women.
American journal of human genetics 2009;85(2):228-39.
2009: Katja Maria Fisch; Cristian Gurgui; Nina Heycke; Sonia A van der Sar; Sally A Anderson; Victoria L Webb; Stefan Taudien; Matthias Platzer; Brent K Rubio; Sarah J Robinson; Phillip Crews; Jörn Piel
Polyketide assembly lines of uncultivated sponge symbionts from structure-based gene targeting.
Nature chemical biology 2009;5(7):494-501.
2009: Tobias Fromme; Christoph Hoffmann; Kerstin Nau; Jan Rozman; Kathrin Reichwald; Michael Utting; Matthias Platzer; Martin Klingenspor
An intronic single base exchange leads to a brown adipose tissue-specific loss of Ucp3 expression and an altered body mass trajectory.
Physiological genomics 2009;38(1):54-62.
2009: Rileen Sinha; Swetlana Nikolajewa; Karol Szafranski; Michael Hiller; Niels Jahn; Klaus Huse; Matthias Platzer; Rolf Backofen
Accurate prediction of NAGNAG alternative splicing.
Nucleic acids research 2009;37(11):3569-79.
2009: Nils Hartmann; Kathrin Reichwald; André Lechel; Michael Graf; Jeanette Kirschner; Alexander Dorn; Eva Terzibasi; Juliane Wellner; Matthias Platzer; Karl Lenhard Rudolph; Alessandro Cellerino; Christoph Englert
Telomeres shorten while Tert expression increases during ageing of the short-lived fish Nothobranchius furzeri.
Mechanisms of ageing and development 2009;130(5):290-6.
2009: Abdou ElSharawy; Bernd Hundrieser; Mario Brosch; Michael Wittig; Klaus Huse; Matthias Platzer; Albert Becker; Matthias Simon; Philip Rosenstiel; Stefan Schreiber; Michael Krawczak; Jochen Hampe
Systematic evaluation of the effect of common SNPs on pre-mRNA splicing.
Human mutation 2009;30(4):625-32.
2009: Anne-Kathrin Wermter; André Scherag; Katja Holter; Kathrin Reichwald; Peter Lichtner; Wolfgang Siegfried; John Blundell; Clare Lawton; Stephen Whybrow; James Stubbs; Jonathan R Arch; Thomas Meitinger; Matthias Platzer; Anke Hinney; Johannes Hebebrand
Procolipase gene: no association with early-onset obesity or fat intake.
Obesity facts 2009;2(1):40-4.
2009: Burkhard Steuernagel; Stefan Taudien; Heidrun Gundlach; Michael Seidel; Ruvini Ariyadasa; Daniela Schulte; Andreas Petzold; Marius Felder; Andreas Graner; Uwe Scholz; Klaus F X Mayer; Matthias Platzer; Nils Stein
De novo 454 sequencing of barcoded BAC pools for comprehensive gene survey and genome analysis in the complex genome of barley.
BMC genomics 2009;10():547.
2009: Kathrin Reichwald; Chris Lauber; Indrajit Nanda; Jeanette Kirschner; Nils Hartmann; Susanne Schories; Ulrike Gausmann; Stefan Taudien; Markus B Schilhabel; Karol Szafranski; Gernot Glöckner; Michael Schmid; Alessandro Cellerino; Manfred Schartl; Christoph Englert; Matthias Platzer
High tandem repeat content in the genome of the short-lived annual fish Nothobranchius furzeri: a new vertebrate model for aging research.
Genome biology 2009;10(2):R16.
2008: Marco Groth; Karol Szafranski; Stefan Taudien; Klaus Huse; Oliver Mueller; Philip Rosenstiel; Anders O H Nygren; Stefan Schreiber; Gerd Birkenmeier; Matthias Platzer
High-resolution mapping of the 8p23.1 beta-defensin cluster reveals strictly concordant copy number variation of all genes.
Human mutation 2008;29(10):1247-54.
2008: Michael Hiller; Matthias Platzer
Widespread and subtle: alternative splicing at short-distance tandem sites.
Trends in genetics : TIG 2008;24(5):246-55.
2008: Michael Hiller; Karol Szafranski; Rileen Sinha; Klaus Huse; Swetlana Nikolajewa; Philip Rosenstiel; Stefan Schreiber; Rolf Backofen; Matthias Platzer
Assessing the fraction of short-distance tandem splice sites under purifying selection.
RNA (New York, N.Y.) 2008;14(4):616-29.
2008: TuAnh Nguyen; Keishi Ishida; Holger Jenke-Kodama; Elke Dittmann; Cristian Gurgui; Thomas Hochmuth; Stefan Taudien; Matthias Platzer; Christian Hertweck; Jörn Piel
Exploiting the mosaic structure of trans-acyltransferase polyketide synthases for natural product discovery and pathway dissection.
Nature biotechnology 2008;26(2):225-33.
2008: Martin Jastroch; K W Withers; Stefan Taudien; Peter Frappell; Michael Helwig; T Fromme; V Hirschberg; Gerhard Heldmaier; B M McAllan; B T Firth; T Burmester; Matthias Platzer; Martin Klingenspor
Marsupial uncoupling protein 1 sheds light on the evolution of mammalian nonshivering thermogenesis.
Physiological genomics 2008;32(2):161-9.
2008: Rileen Sinha; Michael Hiller; Rainer Pudimat; Ulrike Gausmann; Matthias Platzer; Rolf Backofen
Improved identification of conserved cassette exons using Bayesian networks.
BMC bioinformatics 2008;9():477.
2008: Klaus Huse; Stefan Taudien; Marco Groth; Philip Rosenstiel; Karol Szafranski; Michael Hiller; Jochen Hampe; Kerstin Junker; Jorg Schubert; Stefan Schreiber; Gerd Birkenmeier; Michael Krawczak; Matthias Platzer
Genetic variants of the copy number polymorphic beta-defensin locus are associated with sporadic prostate cancer.
Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine 2008;29(2):83-92.
2008: Stefanie Schindler; Karol Szafranski; Michael Hiller; GUL ALI; Saiprasad G Palusa; Rolf Backofen; Matthias Platzer; Anireddy S N Reddy
Alternative splicing at NAGNAG acceptors in Arabidopsis thaliana SR and SR-related protein-coding genes.
BMC genomics 2008;9():159.
2008: Michael Hiller; Karol Szafranski; Klaus Huse; Rolf Backofen; Matthias Platzer
Selection against tandem splice sites affecting structured protein regions.
BMC evolutionary biology 2008;8():89.
2008: Huan Qiu; Stefan Taudien; Holger Herlyn; Juergen Schmitz; Yuan Zhou; Guopei Chen; Roberta Roberto; Mariano Rocchi; Matthias Platzer; Leszek Wojnowski
CYP3 phylogenomics: evidence for positive selection of CYP3A4 and CYP3A7.
Pharmacogenetics and genomics 2008;18(1):53-66.
2007: Ingo Ebersberger; Petra Galgoczy; Stefan Taudien; Simone Taenzer; Matthias Platzer; Arndt von Haeseler
Mapping human genetic ancestry.
Molecular biology and evolution 2007;24(10):2266-76.
2007: Swetlana Nikolajewa; Rainer Pudimat; Michael Hiller; Matthias Platzer; Rolf Backofen
BioBayesNet: a web server for feature extraction and Bayesian network modeling of biological sequence data.
Nucleic acids research 2007;35(Web Server issue):W688-93.
2007: Lars Fieseler; Ute Hentschel; Lubomir Grozdanov; Andreas Schirmer; Gaiping Wen; Matthias Platzer; Sinisa Hrvatin; Daniel Butzke; Katrin Zimmermann; Jörn Piel
Widespread occurrence and genomic context of unusually small polyketide synthase genes in microbial consortia associated with marine sponges.
Applied and environmental microbiology 2007;73(7):2144-55.
2007: Jochen Hampe; Andre Franke; Philip Rosenstiel; Andreas Till; Markus Teuber; Klaus Huse; Mario Albrecht; Gabriele Mayr; Francisco M De La Vega; Jason Briggs; Simone Günther; Natalie Prescott; Clive M Onnie; Robert Häsler; Bence Sipos; Ulrich R Fölsch; Thomas Lengauer; Matthias Platzer; Christopher G Mathew; Michael Krawczak; Stefan Schreiber
A genome-wide association scan of nonsynonymous SNPs identifies a susceptibility variant for Crohn disease in ATG16L1.
Nature genetics 2007;39(2):207-11.
2007: Philip Rosenstiel; Klaus Huse; Andre Franke; Jochen Hampe; Kathrin Reichwald; Cornelia Platzer; Roland Roberts; Christopher G Mathew; Matthias Platzer; Stefan Schreiber
Functional characterization of two novel 5' untranslated exons reveals a complex regulation of NOD2 protein expression.
BMC genomics 2007;8():472.
2007: Alessandro Romualdi; Marius Felder; Dominic Rose; Ulrike Gausmann; Markus Schilhabel; Gernot Glöckner; Matthias Platzer; Jürgen Sühnel
GenColors: annotation and comparative genomics of prokaryotes made easy.
Methods in molecular biology (Clifton, N.J.) 2007;395():75-96.
2007: Andre Franke; Jochen Hampe; Philip Rosenstiel; Christian Becker; Florian Wagner; Robert Häsler; Randall Little; Klaus Huse; Andreas Ruether; Tobias Balschun; Michael Wittig; Abdou ElSharawy; Gabriele Mayr; Mario Albrecht; Natalie Prescott; Clive M Onnie; Hélène Fournier; Tim P Keith; Uwe Radelof; Matthias Platzer; Christopher G Mathew; Monika Stoll; Michael Krawczak; Peter Nürnberg; Stefan Schreiber
Systematic association mapping identifies NELL1 as a novel IBD disease gene.
PloS one 2007;2(8):e691.
2007: Karol Szafranski; Stefanie Schindler; Stefan Taudien; Michael Hiller; Klaus Huse; Niels Jahn; Stefan Schreiber; Rolf Backofen; Matthias Platzer
Violating the splicing rules: TG dinucleotides function as alternative 3' splice sites in U2-dependent introns.
Genome biology 2007;8(8):R154.
2007: Susann Friedel; Kathrin Reichwald; André Scherag; Harald Brumm; Anne-Kathrin Wermter; Hans-Rudolf Fries; Kerstin Koberwitz; Martin Wabitsch; Thomas Meitinger; Matthias Platzer; Heike Biebermann; Anke Hinney; Johannes Hebebrand
Mutation screen and association studies in the diacylglycerol O-acyltransferase homolog 2 gene (DGAT2), a positional candidate gene for early onset obesity on chromosome 11q13.
BMC genetics 2007;8():17.
2007: Tobias Fromme; Kathrin Reichwald; Matthias Platzer; Xing-Sheng Li; Martin Klingenspor
Chicken ovalbumin upstream promoter transcription factor II regulates uncoupling protein 3 gene transcription in Phodopus sungorus.
BMC molecular biology 2007;8():1.
2007: Michael Hiller; Swetlana Nikolajewa; Klaus Huse; Karol Szafranski; Philip Rosenstiel; Stefan Schuster; Rolf Backofen; Matthias Platzer
TassDB: a database of alternative tandem splice sites.
Nucleic acids research 2007;35(Database issue):D188-92.
2006: Michael Hiller; Karol Szafranski; Rolf Backofen; Matthias Platzer
Alternative splicing at NAGNAG acceptors: simply noise or noise and more?
PLoS genetics 2006;2(11):e207; author reply e208.
2006: Abdou ElSharawy; Carl Manaster; Markus Teuber; Philip Rosenstiel; Ruta Kwiatkowski; Klaus Huse; Matthias Platzer; Albert Becker; Peter Nürnberg; Stefan Schreiber; Jochen Hampe
SNPSplicer: systematic analysis of SNP-dependent splicing in genotyped cDNAs.
Human mutation 2006;27(11):1129-34.
2006: Marco Groth; Klaus Huse; Kathrin Reichwald; Stefan Taudien; Jochen Hampe; Philip Rosenstiel; Gerd Birkenmeier; Stefan Schreiber; Matthias Platzer
Method for preparing single-stranded DNA templates for Pyrosequencing using vector ligation and universal biotinylated primers.
Analytical biochemistry 2006;356(2):194-201.
2006: Matthias Platzer; Michael Hiller; Karol Szafranski; Niels Jahn; Jochen Hampe; Stefan Schreiber; Rolf Backofen; Klaus Huse
Sequencing errors or SNPs at splice-acceptor guanines in dbSNP?
Nature biotechnology 2006;24(9):1068-70.
2006: Karol Szafranski; Niels Jahn; Matthias Platzer
tuple_plot: fast pairwise nucleotide sequence comparison with noise suppression.
Bioinformatics (Oxford, England) 2006;22(15):1917-8.
2006: Anke Hinney; Thomas Bettecken; Patrick Tarnow; Harald Brumm; Kathrin Reichwald; Peter Lichtner; André Scherag; Thuy Trang Nguyen; Pia Schlumberger; Winfried Rief; Caren Vollmert; Thomas Illig; H-Erich Wichmann; Helmut Schäfer; Matthias Platzer; Heike Biebermann; Thomas Meitinger; Johannes Hebebrand
Prevalence, spectrum, and functional characterization of melanocortin-4 receptor gene mutations in a representative population-based sample and obese adults from Germany.
The Journal of clinical endocrinology and metabolism 2006;91(5):1761-9.
2006: Stefan Taudien; Ingo Ebersberger; Gernot Glöckner; Matthias Platzer
Should the draft chimpanzee sequence be finished?
Trends in genetics : TIG 2006;22(3):122-5.
2006: Philip Rosenstiel; Klaus Huse; Andreas Till; Jochen Hampe; Stephan Hellmig; Christian Sina; Susanne Billmann; Oliver von Kampen; Georg H Waetzig; Matthias Platzer; Dirk Seegert; Stefan Schreiber
A short isoform of NOD2/CARD15, NOD2-S, is an endogenous inhibitor of NOD2/receptor-interacting protein kinase 2-induced signaling pathways.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(9):3280-5.
2006: Michael Hiller; Klaus Huse; Karol Szafranski; Niels Jahn; Jochen Hampe; Stefan Schreiber; Rolf Backofen; Matthias Platzer
Single-nucleotide polymorphisms in NAGNAG acceptors are highly predictive for variations of alternative splicing.
American journal of human genetics 2006;78(2):291-302.
2006: Gernot Glöckner; Ulrike Schulte-Spechtel; Markus Schilhabel; Marius Felder; Jürgen Sühnel; Bettina Wilske; Matthias Platzer
Comparative genome analysis: selection pressure on the Borrelia vls cassettes is essential for infectivity.
BMC genomics 2006;7():211.
2006: Michael Hiller; Klaus Huse; Karol Szafranski; Philip Rosenstiel; Stefan Schreiber; Rolf Backofen; Matthias Platzer
Phylogenetically widespread alternative splicing at unusual GYNGYN donors.
Genome biology 2006;7(7):R65.
2006: Weiyue Zheng; Philip Rosenstiel; Klaus Huse; Christian Sina; Ruta Valentonyte; Nancy Mah; Lutz Zeitlmann; Johannes Grosse; N Ruf; Peter Nürnberg; Christine M Costello; Clive M Onnie; Christopher G Mathew; Matthias Platzer; Stefan Schreiber; Jochen Hampe
Evaluation of AGR2 and AGR3 as candidate genes for inflammatory bowel disease.
Genes and immunity 2006;7(1):11-8.
2005: Gaiping Wen; Juliane Ramser; Stefan Taudien; Ulrike Gausmann; Karin Blechschmidt; Adam Frankish; Jennifer Ashurst; Alfons Meindl; Matthias Platzer
Validation of mRNA/EST-based gene predictions in human Xp11.4 revealed differences to the organization of the orthologous mouse locus.
Mammalian genome : official journal of the International Mammalian Genome Society 2005;16(12):934-41.
2005: Nadine Schäuble; Kathrin Reichwald; Wolfgang Grassl; Helen Bechstein; Hans-Christian Müller; André Scherag; Frank Geller; Michael Utting; Wolfgang Siegfried; Hanspeter Goldschmidt; John Blundell; Clare L Lawton; Rahul Alam; Stephen Whybrow; James Stubbs; Matthias Platzer; Johannes Hebebrand; Anke Hinney
Human galanin (GAL) and galanin 1 receptor (GALR1) variations are not involved in fat intake and early onset obesity.
The Journal of nutrition 2005;135(6):1387-92.
2005: Ruta Valentonyte; Jochen Hampe; Klaus Huse; Philip Rosenstiel; Mario Albrecht; Annette Stenzel; Marion Nagy; Karoline Gaede; Andre Franke; Robert Haesler; Andreas Koch; Thomas Lengauer; Dirk Seegert; Norbert Reiling; Stefan Ehlers; Eberhard Schwinger; Matthias Platzer; Michael Krawczak; Joachim Müller-Quernheim; Manfred Schürmann; Stefan Schreiber
Sarcoidosis is associated with a truncating splice site mutation in BTNL2.
Nature genetics 2005;37(4):357-64.
2005: Jörn Piel; Daniel Butzke; Nobuhiro Fusetani; Dequan Hui; Matthias Platzer; Gaiping Wen; Shigeki Matsunaga
Exploring the chemistry of uncultivated bacterial symbionts: antitumor polyketides of the pederin family.
Journal of natural products 2005;68(3):472-9.
2005: Marius Felder; Karol Szafranski; Rüdiger Lehmann; Ludwig Eichinger; Angelika A Noegel; Matthias Platzer; Gernot Glöckner
DictyMOLD-a Dictyostelium discoideum genome browser database.
Bioinformatics (Oxford, England) 2005;21(5):696-7.
2005: Michael Hiller; Klaus Huse; Matthias Platzer; Rolf Backofen
Non-EST based prediction of exon skipping and intron retention events using Pfam information.
Nucleic acids research 2005;33(17):5611-21.
2005: Michael Hiller; Klaus Huse; Matthias Platzer; Rolf Backofen
Creation and disruption of protein features by alternative splicing -- a novel mechanism to modulate function.
Genome biology 2005;6(7):R58.
2004: Michael Hiller; Klaus Huse; Karol Szafranski; Niels Jahn; Jochen Hampe; Stefan Schreiber; Rolf Backofen; Matthias Platzer
Widespread occurrence of alternative splicing at NAGNAG acceptors contributes to proteome plasticity.
Nature genetics 2004;36(12):1255-7.
2004: Jörn Piel; Dequan Hui; Gaiping Wen; Daniel Butzke; Matthias Platzer; Nobuhiro Fusetani; Shigeki Matsunaga
Antitumor polyketide biosynthesis by an uncultivated bacterial symbiont of the marine sponge Theonella swinhoei.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(46):16222-7.
2004: Juliane Ramser; Birgitta Winnepenninckx; Claus Lenski; Vanessa Errijgers; Matthias Platzer; Charles E Schwartz; Alfons Meindl; R Frank Kooy
A splice site mutation in the methyltransferase gene FTSJ1 in Xp11.23 is associated with non-syndromic mental retardation in a large Belgian family (MRX9).
Journal of medical genetics 2004;41(9):679-83.
2004: Michael Utting; Jochen Hampe; Matthias Platzer; Klaus Huse
Locking of 3' ends of single-stranded DNA templates for improved Pyrosequencing performance.
BioTechniques 2004;37(1):66-7, 70-3.
2004: Cornelia Hoyer; Dorothea Zander; Sandra Fleischer; Markus Schilhabel; Manfred Kroener; Matthias Platzer; Joachim Clos
A Leishmania donovani gene that confers accelerated recovery from stationary phase growth arrest.
International journal for parasitology 2004;34(7):803-11.
2004: Claus Lenski; fatima abidi; Alfons Meindl; Alice Gibson; Matthias Platzer; R Frank Kooy; Herbert A Lubs; Roger E Stevenson; Juliane Ramser; Charles E Schwartz
Novel truncating mutations in the polyglutamine tract binding protein 1 gene (PQBP1) cause Renpenning syndrome and X-linked mental retardation in another family with microcephaly.
American journal of human genetics 2004;74(4):777-80.
2004: Frank Geller; Kathrin Reichwald; Astrid Dempfle; Thomas Illig; Caren Vollmert; Stephan Herpertz; Winfried Siffert; Matthias Platzer; Claudia Hess; Thomas Gudermann; Heike Biebermann; H-Erich Wichmann; Helmut Schäfer; Anke Hinney; Johannes Hebebrand
Melanocortin-4 receptor gene variant I103 is negatively associated with obesity.
American journal of human genetics 2004;74(3):572-81.
2004: Jörn Piel; Gaiping Wen; Matthias Platzer; Dequan Hui
Unprecedented diversity of catalytic domains in the first four modules of the putative pederin polyketide synthase.
Chembiochem : a European journal of chemical biology 2004;5(1):93-8.
2004: Stefan Taudien; Petra Galgoczy; Klaus Huse; Kathrin Reichwald; Markus Schilhabel; Karol Szafranski; Atsushi Shimizu; Shuichi Asakawa; Adam Frankish; Ivan F Loncarevic; Nobuyoshi Shimizu; Roman Siddiqui; Matthias Platzer
Polymorphic segmental duplications at 8p23.1 challenge the determination of individual defensin gene repertoires and the assembly of a contiguous human reference sequence.
BMC genomics 2004;5(1):92.
2004: Gernot Glöckner; Rüdiger Lehmann; Alessandro Romualdi; S Pradella; Ulrike Schulte-Spechtel; Markus Schilhabel; Bettina Wilske; Jürgen Sühnel; Matthias Platzer
Comparative analysis of the Borrelia garinii genome.
Nucleic acids research 2004;32(20):6038-46.
2002: Gernot Glöckner; Ludwig Eichinger; Karol Szafranski; Justin A Pachebat; Alan T Bankier; Paul H Dear; Rüdiger Lehmann; Cornelia Baumgart; Genís Parra; Josep F Abril; Roderic Guigó; Kai Kumpf; Budi Tunggal; Edward Cox; Michael A Quail; Matthias Platzer; André Rosenthal; Angelika A Noegel
Sequence and analysis of chromosome 2 of Dictyostelium discoideum.
Nature 2002;418(6893):79-85.
2002: Henning Frenzel; Jochen Hampe; Klaus Huse; Silvia Mascheretti; Peter P Croucher; Nicholas J Lynch; Reiner Siebert; Matthias Platzer; Stefan Schreiber
Mutation detection and physical mapping of the CD11 gene cluster in association with inflammatory bowel disease.
Immunogenetics 2002;53(10-11):835-42.
2002: LaRae M Copley; Wei D Zhao; Kevin Kopacz; Gail E Herman; Petra Kioschis; Annemarie Poustka; Stefan Taudien; Matthias Platzer
Exclusion of mutations in the MTMR1 gene as a frequent cause of X-linked myotubular myopathy.
American journal of medical genetics 2002;107(3):256-8.
2002: Jochen Hampe; Henning Frenzel; Muddassar M Mirza; Peter J P Croucher; Andrew P Cuthbert; Silvia Mascheretti; Klaus Huse; Matthias Platzer; Stephen Bridger; Birgit Meyer; Peter Nürnberg; Pieter C F Stokkers; Michael Krawczak; Christopher G Mathew; Mark Curran; Stefan Schreiber
Evidence for a NOD2-independent susceptibility locus for inflammatory bowel disease on chromosome 16p.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(1):321-6.
2001: Cornelia Hoyer; Katja Mellenthin; Markus Schilhabel; Matthias Platzer; Joachim Clos
Use of genetic complementation to identify gene(s) which specify species-specific organ tropism of Leishmania.
Medical microbiology and immunology 2001;190(1-2):43-6.
2001: Swaroop Aradhya; Tiziana Bardaro; P Galgóczy; Takanori Yamagata; Teresa Esposito; H Patlan; Alfredo Ciccodicola; Arnold Munnich; Sue Kenwrick; Matthias Platzer; Michele D'Urso; David L Nelson
Multiple pathogenic and benign genomic rearrangements occur at a 35 kb duplication involving the NEMO and LAGE2 genes.
Human molecular genetics 2001;10(22):2557-67.
2001: K Dry; Sue Kenwrick; A Rosenthal; Matthias Platzer
The complete sequence of the human locus for NgCAM-related cell adhesion molecule reveals a novel alternative exon in chick and man and conserved genomic organization for the L1 subfamily.
Gene 2001;273(1):115-22.
2001: P Galgóczy; André Rosenthal; Matthias Platzer
Human-mouse comparative sequence analysis of the NEMO gene reveals an alternative promoter within the neighboring G6PD gene.
Gene 2001;271(1):93-8.
2000: Stefan Taudien; Andreas Rump; Matthias Platzer; Bernd Drescher; R Schattevoy; G Gloeckner; M Dette; C Baumgart; J Weber; U Menzel; André Rosenthal
RUMMAGE--a high-throughput sequence annotation system.
Trends in genetics : TIG 2000;16(11):519-20.
2000: Kathrin Reichwald; J Thiesen; T Wiehe; Joachim M Weitzel; W A Poustka; André Rosenthal; Matthias Platzer; Wolf H Strätling; Petra Kioschis
Comparative sequence analysis of the MECP2-locus in human and mouse reveals new transcribed regions.
Mammalian genome : official journal of the International Mammalian Genome Society 2000;11(3):182-90.
1999: Ulrich Oppitz; U Bernthaler; Detlev Schindler; Alexandra Sobeck; Holger Hoehn; Matthias Platzer; A Rosenthal; Michael Flentje
Sequence analysis of the ATM gene in 20 patients with RTOG grade 3 or 4 acute and/or late tissue radiation side effects.
International journal of radiation oncology, biology, physics 1999;44(5):981-8.
1999: N Sandoval; Matthias Platzer; André Rosenthal; Thilo Dörk; Regina Bendix; Britta Skawran; Manfred Stuhrmann; Rolf-Dieter Wegner; Karl Sperling; S Banin; Yosef Shiloh; A Baumer; U Bernthaler; H Sennefelder; M Brohm; Bernhard H F Weber; Detlev Schindler
Characterization of ATM gene mutations in 66 ataxia telangiectasia families.
Human molecular genetics 1999;8(1):69-79.
1998: Petra Kioschis; Stefan Wiemann; Nina S Heiss; F Francis; C Götz; Annemarie Poustka; Stefan Taudien; Matthias Platzer; T Wiehe; G Beckmann; J Weber; G Nordsiek; André Rosenthal
Genomic organization of a 225-kb region in Xq28 containing the gene for X-linked myotubular myopathy (MTM1) and a related gene (MTMR1).
Genomics 1998;54(2):256-66.
1998: Oliver Brandau; Gerald Nyakatura; Kerry Baldwin Jedele; Matthias Platzer; Helene Achatz; M Ross; Jan Murken; André Rosenthal; Alfons Meindl
UHX1 and PCTK1: precise characterisation and localisation within a gene-rich region in Xp11.23 and evaluation as candidate genes for retinal diseases mapped to Xp21.1-p11.2.
European journal of human genetics : EJHG 1998;6(5):459-66.
1998: D Mishmar; Ayelet Rahat; Stephen W Scherer; Gerald Nyakatura; B Hinzmann; Yoshinori Kohwi; Y Mandel-Gutfroind; J R Lee; Bernd Drescher; D E Sas; Hanah Margalit; Matthias Platzer; A Weiss; L C Tsui; André Rosenthal; Batsheva Kerem
Molecular characterization of a common fragile site (FRA7H) on human chromosome 7 by the cloning of a simian virus 40 integration site.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(14):8141-6.
1998: Raymonda Varon; C Vissinga; Matthias Platzer; Karen M Cerosaletti; Krystyna H Chrzanowska; Kathrin Saar; G Beckmann; Eva Seemanová; Paul Roy Cooper; Norma J Nowak; Markus Stumm; Corry M R Weemaes; Richard A Gatti; R K Wilson; Martin Digweed; A Rosenthal; Karl Sperling; Patrick Concannon; A Reis
Nibrin, a novel DNA double-strand break repair protein, is mutated in Nijmegen breakage syndrome.
Cell 1998;93(3):467-76.
1998: O Coutelle; Gerald Nyakatura; Stefan Taudien; greg elgar; Sydney Brenner; Matthias Platzer; Bernd Drescher; M Jouet; Sue Kenwrick; André Rosenthal
The neural cell adhesion molecule L1: genomic organisation and differential splicing is conserved between man and the pufferfish Fugu.
Gene 1998;208(1):7-15.
1997: Antje Knöll; Heribert Schunkert; Kathrin Reichwald; Alexander Hessel Jan Danser; D Bauer; Matthias Platzer; G Stein; André Rosenthal
Human renin binding protein: complete genomic sequence and association of an intronic T/C polymorphism with the prorenin level in males.
Human molecular genetics 1997;6(9):1527-34.
1997: V Brenner; Gerald Nyakatura; André Rosenthal; Matthias Platzer
Genomic organization of two novel genes on human Xq28: compact head to head arrangement of IDH gamma and TRAP delta is conserved in rat and mouse.
Genomics 1997;44(1):8-14.
1997: Matthias Platzer; Galit Rotman; D Bauer; Tamar Uziel; Kinneret Savitsky; Anat Bar-Shira; Susan Gilad; Yosef Shiloh; André Rosenthal
Ataxia-telangiectasia locus: sequence analysis of 184 kb of human genomic DNA containing the entire ATM gene.
Genome research 1997;7(6):592-605.
1997: Kinneret Savitsky; Matthias Platzer; Tamar Uziel; Susan Gilad; A Sartiel; André Rosenthal; Orna Elroy-Stein; Yosef Shiloh; Galit Rotman
Ataxia-telangiectasia: structural diversity of untranslated sequences suggests complex post-transcriptional regulation of ATM gene expression.
Nucleic acids research 1997;25(9):1678-84.
1996: N Sandoval; D Bauer; V Brenner; Johannes F Coy; Bernd Drescher; Petra Kioschis; Bernhard Korn; Gerald Nyakatura; Annemarie Poustka; K Reichwald; André Rosenthal; Matthias Platzer
The genomic organization of a human creatine transporter (CRTR) gene located in Xq28.
Genomics 1996;35(2):383-5.
1996: Tamar Uziel; Kinneret Savitsky; Matthias Platzer; Yehiel Ziv; T Helbitz; M Nehls; Thomas Boehm; André Rosenthal; Yosef Shiloh; Galit Rotman
Genomic Organization of the ATM gene.
Genomics 1996;33(2):317-20.