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Charles Plessy

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TOP 3
Charles Plessy; Linda Desbois; Teruo Fujii; piero carninci
Population transcriptomics with single-cell resolution: a new field made possible by microfluidics: a technology for high throughput transcript counting and data-driven definition of cell types.
Dave T P Tang; Raffaella Calligaris; Stefano Gustincich; Charles Plessy; Md Salimullah; Ana Maria Suzuki; piero carninci
Suppression of artifacts and barcode bias in high-throughput transcriptome analyses utilizing template switching.
Philippe Batut; piero carninci; Alexander Dobin; Charles Plessy; Thomas R Gingeras
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression.

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All Publications

2013: Charles Plessy; Linda Desbois; Teruo Fujii; piero carninci
Population transcriptomics with single-cell resolution: a new field made possible by microfluidics: a technology for high throughput transcript counting and data-driven definition of cell types.
BioEssays : news and reviews in molecular, cellular and developmental biology 2013;35(2):131-40.
2013: Dave T P Tang; Raffaella Calligaris; Stefano Gustincich; Charles Plessy; Md Salimullah; Ana Maria Suzuki; piero carninci
Suppression of artifacts and barcode bias in high-throughput transcriptome analyses utilizing template switching.
Nucleic acids research 2013;41(3):e44.
2013: Philippe Batut; piero carninci; Alexander Dobin; Charles Plessy; Thomas R Gingeras
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression.
Genome research 2013;23(1):169-80.
2012: Charles Plessy; Jessica Severin; Roberto Simone; Anne Vassalli; Christina Vlachouli; Silvia Zucchelli; Altuna Akalin; Nicolas Bertin; Claudia Carrieri; Carsten O Daub; Geoffrey J Faulkner; Stefano Gustincich; Yoshihide Hayashizaki; Jun Kawai; Dejan Lazarevic; Boris Lenhard; Peter Mombaerts; Giovanni Pascarella; piero carninci
Promoter architecture of mouse olfactory receptor genes.
Genome research 2012;22(3):486-97.
2011: Md Salimullah; Sakai Mizuho; Charles Plessy; Mizuho Sakai; piero carninci
NanoCAGE: a high-resolution technique to discover and interrogate cell transcriptomes.
Cold Spring Harbor protocols 2011;2011(1):pdb.prot5559.
2010: Charles Plessy; Nicolas Bertin; Hazuki Takahashi; Roberto Simone; Md Salimullah; Timo Lassmann; Morana Vitezic; Jessica Severin; Signe Olivarius; Dejan Lazarevic; Nadine Hornig; Valerio Orlando; Ian Bell; Hui Gao; Jacqueline Dumais; Philipp Kapranov; Huaien Wang; Carrie A Davis; Thomas Gingeras; Jun Kawai; Carsten O Daub; Yoshihide Hayashizaki; Stefano Gustincich; piero carninci
Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan.
Nature methods 2010;7(7):528-34.
2010: Santosh S Atanur; Inanç Birol; Victor Guryev; Martin Hirst; Oliver Hummel; Catherine Morrissey; Jacques Behmoaras; Xose M. Fernandez; Michelle D Johnson; William M McLaren; Giannino Patone; Enrico Petretto; Charles Plessy; Kathleen S Rockland; Charles Rockland; Kathrin Saar; Yongjun Zhao; piero carninci; Paul Flicek; Ted Kurtz; Edwin Cuppen; Michal Pravenec; Norbert Hubner; Steven J M Jones; Ewan Birney; Timothy J Aitman
The genome sequence of the spontaneously hypertensive rat: Analysis and functional significance.
Genome research 2010;20(6):791-803.
2010: Steffen Möller; Hajo Nils Krabbenhöft; Andreas Tille; David Paleino; Alan Williams; Katy Wolstencroft; Carole Goble; Richard Holland; Dominique Belhachemi; Charles Plessy
Community-driven computational biology with Debian Linux.
BMC bioinformatics 2010;11 Suppl 12():S5.
2009: Md Salimullah; Sachiko Kato; Mitsuyoshi Murata; Chika Kawazu; Charles Plessy; piero carninci
Tunable fractionation of nucleic acids.
BioTechniques 2009;47(6):1041-3.
2009: Marta Biagioli; milena pinto; Daniela Cesselli; Marta Zaninello; Dejan Lazarevic; Paola Roncaglia; Roberto Simone; Christina Vlachouli; Charles Plessy; Nicolas Bertin; Antonio Beltrami; Kazuto Kobayashi; Vittorio Gallo; Claudio Santoro; Isidro Ferrer; Stefano Rivella; Carlo Alberto Beltrami; piero carninci; Elio Raviola; Stefano Gustincich
Unexpected expression of alpha- and beta-globin in mesencephalic dopaminergic neurons and glial cells.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(36):15454-9.
2009: Geoffrey J Faulkner; Yasumasa Kimura; Carsten O Daub; Shivangi Wani; Charles Plessy; Katharine M Irvine; Kate Schroder; Nicole Cloonan; Anita L Steptoe; Timo Lassmann; Kazunori Waki; Nadine Hornig; Takahiro Arakawa; Hazuki Takahashi; Jun Kawai; Alistair Forrest; Harukazu Suzuki; Yoshihide Hayashizaki; David A Hume; Valerio Orlando; Sean M Grimmond; piero carninci
The regulated retrotransposon transcriptome of mammalian cells.
Nature genetics 2009;41(5):563-71.
2009: Signe Olivarius; Charles Plessy; piero carninci
High-throughput verification of transcriptional starting sites by Deep-RACE.
BioTechniques 2009;46(2):130-2.
2008: Charles Plessy; Michela Fagiolini; Akiko Wagatsuma; Norihiro Harasawa; Takenobu Kuji; Atsuko Asaka-Oba; Yukari Kanzaki; Sayaka Fujishima; Kazunori Waki; Hiroyuki Nakahara; Takao K Hensch; piero carninci
A resource for transcriptomic analysis in the mouse brain.
PloS one 2008;3(8):e3012.
2006: Stefano Gustincich; Albin Sandelin; Charles Plessy; Shintaro Katayama; Roberto Simone; Dejan Lazarevic; Yoshihide Hayashizaki; piero carninci
The complexity of the mammalian transcriptome.
The Journal of physiology 2006;575(Pt 2):321-32.
2005: Charles Plessy; Thomas Dickmeis; Frédéric Chalmel; Uwe Strähle
Enhancer sequence conservation between vertebrates is favoured in developmental regulator genes.
Trends in genetics : TIG 2005;21(4):207-10.
2004: Patrick Blader; Chen Sok Lam; Sepand Rastegar; Raffaella Scardigli; Jean-Christophe Nicod; Nicolas Simplicio; Charles Plessy; Nadine Fischer; Carol Schuurmans; François Guillemot; Uwe Strähle
Conserved and acquired features of neurogenin1 regulation.
Development (Cambridge, England) 2004;131(22):5627-37.
2004: Andrea Geling; Charles Plessy; Sepand Rastegar; Uwe Strähle; Laure Bally-Cuif
Her5 acts as a prepattern factor that blocks neurogenin1 and coe2 expression upstream of Notch to inhibit neurogenesis at the midbrain-hindbrain boundary.
Development (Cambridge, England) 2004;131(9):1993-2006.
2004: Thomas Dickmeis; Charles Plessy; Sepand Rastegar; Pia Aanstad; Ralf Herwig; Frédéric Chalmel; Nadine Fischer; Uwe Strähle
Expression profiling and comparative genomics identify a conserved regulatory region controlling midline expression in the zebrafish embryo.
Genome research 2004;14(2):228-38.
2003: Patrick Blader; Charles Plessy; Uwe Strähle
Multiple regulatory elements with spatially and temporally distinct activities control neurogenin1 expression in primary neurons of the zebrafish embryo.
Mechanisms of development 2003;120(2):211-8.
2002: Véronique Van De Bor; Pascal Heitzler; Sophie Leger; Charles Plessy; Angela Giangrande
Precocious expression of the Glide/Gcm glial-promoting factor in Drosophila induces neurogenesis.
Genetics 2002;160(3):1095-106.
2001: Thomas Dickmeis; Sepand Rastegar; Pia Aanstad; Matthew Clark; Nadine Fischer; Charles Plessy; Frédéric M Rosa; Vladimir Korzh; Uwe Strähle
Expression of brain subtype creatine kinase in the zebrafish embryo.
Mechanisms of development 2001;109(2):409-12.