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Vladimir Pletnev

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Sergei Pletnev; Dmitry M Chudakov; Zbigniew Dauter; Sergey Lukyanov; Nadya V Pletneva; Ekaterina A Souslova; Alexander Wlodawer; Vladimir Pletnev
Structural basis for bathochromic shift of fluorescence in far-red fluorescent proteins eqFP650 and eqFP670.
Nadezhda Pletneva; Irina I Shemiakina; Alexander Wlodawer; Vladimir Pletnev; Igor Artemyev; Dmitriy M Chudakov; Zbigniew Dauter; Sergei Pletnev
Crystallographic study of red fluorescent protein eqFP578 and its far-red variant Katushka reveals opposite pH-induced isomerization of chromophore.
Nadya V Pletneva; Vladimir Pletnev; Konstantin A Lukyanov; Nadya G Gurskaya; Ekaterina A Goryacheva; Vladimir Martynov; Alexander Wlodawer; Zbigniew Dauter; Sergei Pletnev
Structural evidence for a dehydrated intermediate in green fluorescent protein chromophore biosynthesis.

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All Publications

2012: Sergei Pletnev; Dmitry M Chudakov; Zbigniew Dauter; Sergey Lukyanov; Nadya V Pletneva; Ekaterina A Souslova; Alexander Wlodawer; Vladimir Pletnev
Structural basis for bathochromic shift of fluorescence in far-red fluorescent proteins eqFP650 and eqFP670.
Acta crystallographica. Section D, Biological crystallography 2012;68(Pt 9):1088-97.
2011: Nadezhda Pletneva; Irina I Shemiakina; Alexander Wlodawer; Vladimir Pletnev; Igor Artemyev; Dmitriy M Chudakov; Zbigniew Dauter; Sergei Pletnev
Crystallographic study of red fluorescent protein eqFP578 and its far-red variant Katushka reveals opposite pH-induced isomerization of chromophore.
Protein science : a publication of the Protein Society 2011;20(7):1265-74.
2010: Nadya V Pletneva; Vladimir Pletnev; Konstantin A Lukyanov; Nadya G Gurskaya; Ekaterina A Goryacheva; Vladimir Martynov; Alexander Wlodawer; Zbigniew Dauter; Sergei Pletnev
Structural evidence for a dehydrated intermediate in green fluorescent protein chromophore biosynthesis.
The Journal of biological chemistry 2010;285(21):15978-84.
2009: William L Duax; Robert Huether; Vladimir Pletnev; Timothy C Umland
Divergent evolution of a Rossmann fold and identification of its oldest surviving ancestor.
International journal of bioinformatics research and applications 2009;5(3):280-94.
2008: Sergei Pletnev; Dmitry Shcherbo; Dmitry M Chudakov; Nadezhda Pletneva; Ekaterina M Merzlyak; Alexander Wlodawer; Zbigniew Dauter; Vladimir Pletnev
A crystallographic study of bright far-red fluorescent protein mKate reveals pH-induced cis-trans isomerization of the chromophore.
The Journal of biological chemistry 2008;283(43):28980-7.
2007: Nadezhda Pletneva; Vladimir Pletnev; Tamara V Tikhonova; Alexey A Pakhomov; Vladimir Popov; Vladimir Martynov; Alexander Wlodawer; Zbigniew Dauter; Sergei Pletnev
Refined crystal structures of red and green fluorescent proteins from the button polyp Zoanthus.
Acta crystallographica. Section D, Biological crystallography 2007;63(Pt 10):1082-93.
2007: Vladimir Pletnev; Robert Huether; Lukas Habegger; Wayne Schultz; William L Duax
Rational proteomics of PKD1. I. Modeling the three dimensional structure and ligand specificity of the C_lectin binding domain of Polycystin-1.
Journal of molecular modeling 2007;13(8):891-6.
2007: Nadezhda Pletneva; Sergei Pletnev; D M Chudakov; Tamara V Tikhonova; Vladimir O Popov; Vladimir Martynov; Alexander Wlodawer; Z Dauter; Vladimir Pletnev
[Three-dimensional structure of yellow fluorescent protein zYFP538 from Zoanthus sp. at the resolution 1.8 angstrom].
Bioorganicheskaia khimiia 2007;33(4):421-30.
2006: Vladimir Pletnev; James Lewis Thomas; Felicia L Rhaney; Lynley S Holt; Launa A Scaccia; Timothy C Umland; William L Duax
Rational proteomics V: structure-based mutagenesis has revealed key residues responsible for substrate recognition and catalysis by the dehydrogenase and isomerase activities in human 3beta-hydroxysteroid dehydrogenase/isomerase type 1.
The Journal of steroid biochemistry and molecular biology 2006;101(1):50-60.
2006: Nadezhda Pletneva; Sergei Pletnev; Tamara V Tikhonova; Vladimir Popov; Vladimir Martynov; Vladimir Pletnev
Structure of a red fluorescent protein from Zoanthus, zRFP574, reveals a novel chromophore.
Acta crystallographica. Section D, Biological crystallography 2006;62(Pt 5):527-32.
2005: William L Duax; James Lewis Thomas; Vladimir Pletnev; Anthony Addlagatta; Robert Huether; Lukas Habegger; Charles M Weeks
Determining structure and function of steroid dehydrogenase enzymes by sequence analysis, homology modeling, and rational mutational analysis.
Annals of the New York Academy of Sciences 2005;1061():135-48.
2005: William L Duax; Robert Huether; Vladimir Pletnev; David A Langs; Anthony Addlagatta; Sonjay Connare; Lukas Habegger; Jay Gill
Rational genomics I: antisense open reading frames and codon bias in short-chain oxido reductase enzymes and the evolution of the genetic code.
Proteins 2005;61(4):900-6.
2005: James Lewis Thomas; Elizabeth L Boswell; Launa A Scaccia; Vladimir Pletnev; Timothy C Umland
Identification of key amino acids responsible for the substantially higher affinities of human type 1 3beta-hydroxysteroid dehydrogenase/isomerase (3beta-HSD1) for substrates, coenzymes, and inhibitors relative to human 3beta-HSD2.
The Journal of biological chemistry 2005;280(22):21321-8.
2005: Vladimir Pletnev; William L Duax
Rational proteomics IV: modeling the primary function of the mammalian 17beta-hydroxysteroid dehydrogenase type 8.
The Journal of steroid biochemistry and molecular biology 2005;94(4):327-35.
2004: Vladimir Pletnev; Charles M Weeks; William L Duax
Rational proteomics II: electrostatic nature of cofactor preference in the short-chain oxidoreductase (SCOR) enzyme family.
Proteins 2004;57(2):294-301.
2004: Vladimir Pletnev; E A Goriacheva; IN Tsygannik; VA Nesmeianov; Sergei Pletnev; Walter Pangborn; W Daux
[A new crystal form of the Fab fragment of a monoclonal antibody to human interleukin-2: the three-dimensional structure at 2.7 A resolution].
Bioorganicheskaia khimiia 2004;30(5):466-9.
2003: William L Duax; Vladimir Pletnev; Anthony Addlagatta; Jeremy Bruenn; Charles M Weeks
Rational proteomics I. Fingerprint identification and cofactor specificity in the short-chain oxidoreductase (SCOR) enzyme family.
Proteins 2003;53(4):931-43.
2003: Vladimir Pletnev; Anthony Addlagatta; Zdzislaw Wawrzak; William L Duax
Three-dimensional structure of homodimeric cholesterol esterase-ligand complex at 1.4 A resolution.
Acta crystallographica. Section D, Biological crystallography 2003;59(Pt 1):50-6.
2001: P V Afonin; A V Fokin; IN Tsygannik; I Y Mikhailova; LV Onoprienko; Inessa I Mikhaleva; Vadim T Ivanov; T Y Mareeva; Vladimir Andreevich Nesmeyanov; N Li; Walter Pangborn; William L Duax; Vladimir Pletnev
Crystal structure of an anti-interleukin-2 monoclonal antibody Fab complexed with an antigenic nonapeptide.
Protein science : a publication of the Protein Society 2001;10(8):1514-21.
2001: Debashis Ghosh; M Sawicki; Vladimir Pletnev; Mary Erman; S Ohno; S Nakajin; William L Duax
Porcine carbonyl reductase. structural basis for a functional monomer in short chain dehydrogenases/reductases.
The Journal of biological chemistry 2001;276(21):18457-63.
2000: Vladimir Pletnev; Tatyana S Zamolodchikova; Walter Pangborn; William L Duax
Crystal structure of bovine duodenase, a serine protease, with dual trypsin and chymotrypsin-like specificities.
Proteins 2000;41(1):8-16.
2000: A V Fokin; P V Afonin; I Iu Mikhaĭlova; IN Tsygannik; TIu Mareeva; VA Nesmeianov; Walter Pangborn; N Lee; William L Duax; E Siszak; Vladimir Pletnev
[Spatial structure of a Fab-fragment of a monoclonal antibody to human interleukin-2 in two crystalline forms at a resolution of 2.2 and 2.9 angstroms].
Bioorganicheskaia khimiia 2000;26(8):571-8.
2000: William L Duax; Debashis Ghosh; Vladimir Pletnev
Steroid dehydrogenase structures, mechanism of action, and disease.
Vitamins and hormones 2000;58():121-48.
1999: M W Sawicki; P C Ng; BM Burkhart; Vladimir Pletnev; Tadayoshi Higashiyama; Yoshio Osawa; Debashis Ghosh
Structure of an activity suppressing Fab fragment to cytochrome P450 aromatase: insights into the antibody-antigen interactions.
Molecular immunology 1999;36(7):423-32.
1999: I Iu Mikhaĭlova; TIu Mareeva; IN Tsygannik; Inessa I Mikhaleva; LV Onoprienko; A A Vikhrov; Elena Markvicheva; W Panghorn; William L Duax; V A Nesmiianov; Vladimir Pletnev
[Isolation, crystallization, and preliminary x-ray study of a Fab fragment of monoclonal antibody against human interleukin-2 and its complex with antigenic peptide].
Bioorganicheskaia khimiia 1999;25(4):247-52.
1999: BM Burkhart; R M Gassman; David A Langs; Walter Pangborn; William L Duax; Vladimir Pletnev
Gramicidin D conformation, dynamics and membrane ion transport.
Biopolymers 1999;51(2):129-44.
1997: Vladimir Pletnev; S N Ruzeinikov; I N Tsigannik; Vadim T Ivanov; Sergei Pletnev; David A Langs; William L Duax
The crystal and molecular structure of a valinomycin analogue cyclo[(D-Val-L-Lac-L-Ala-D-Hyi)2(D-Val-L-Lac-L-Val-D-Hyi)]. H2O(C50H82N6 O18.H2O).
Biopolymers 1997;42(6):651-8.
1997: Vladimir Pletnev; Vadim T Ivanov; David A Langs; BM Burkhart; William L Duax
The X-ray structure of the monoclinic crystal form of [D-Hyi2, L-Hyi4] meso-valinomycin.
Biopolymers 1997;42(6):645-50.
1997: Vadim T Ivanov; Andrey A Karelin; Marina M Philippova; IV Nazimov; Vladimir Pletnev
Hemoglobin as a source of endogenous bioactive peptides: the concept of tissue-specific peptide pool.
Biopolymers 1997;43(2):171-88.
1996: Sheng-Xiang Lin; DW Zhu; A Azzi; R L Campbell; R Breton; Fernand Labrie; Debashis Ghosh; Vladimir Pletnev; William L Duax; Walter Pangborn
Studies on the three-dimensional structure of estrogenic 17 beta-hydroxysteroid dehydrogenase.
The Journal of endocrinology 1996;150 Suppl():S13-20.
1996: Walter Pangborn; Mary Erman; N Li; BM Burkhart; Vladimir Pletnev; William L Duax; R Gutierrez; Alessandra Peirano; Jaime Eyzaguirre; D J Thiel; Debashis Ghosh
Characterization of crystals of Penicillium purpurogenum acetyl xylan esterase from high-resolution x-ray diffraction.
Proteins 1996;24(4):523-4.
1996: William L Duax; J F Griffin; David A Langs; G D Smith; P Grochulski; Vladimir Pletnev; V Ivanov
Molecular structure and mechanisms of action of cyclic and linear ion transport antibiotics.
Biopolymers 1996;40(1):141-55.
1995: Vladimir Pletnev; I N Tsygannik; Iu D Fonarev; I Iu Mikhaĭlova; Iu V Kulikov; Vadim T Ivanov; David A Langs; William L Duax
[Crystalline and molecular structure of the K+-complex of meso-valinomycin, cyclo(-(D-Val-L-Hyi-L-Val-D-Hyi)3-).KAuCl4].
Bioorganicheskaia khimiia 1995;21(11):828-33.
1995: Vladimir Pletnev; I N Tsygannik; Vadim T Ivanov; S V Pletnev; David A Langs; William L Duax
Crystal and molecular structure of the centrosymmetric meso-valinomycin analogue--cyclo (D-Val-D-Hyi-D-Val-L-Hyi-L-Val-D-Hyi-L-Val-L-Hyi-L-Val-D-Hyi-D-Val-L-Hy i) (C60H102N6O18).
Biopolymers 1995;36(5):615-21.
1995: Debashis Ghosh; Z Wawrzak; Vladimir Pletnev; Mary Erman; William L Duax; Walter Pangborn; DW Zhu; Fernand Labrie; Sheng-Xiang Lin
Molecular mechanism of inhibition of steroid dehydrogenases by licorice-derived steroid analogs in modulation of steroid receptor function.
Annals of the New York Academy of Sciences 1995;761():341-3.
1995: Debashis Ghosh; Vladimir Pletnev; DW Zhu; Z Wawrzak; William L Duax; Walter Pangborn; Fernand Labrie; Sheng-Xiang Lin
Structure of human estrogenic 17 beta-hydroxysteroid dehydrogenase at 2.20 A resolution.
Structure (London, England : 1993) 1995;3(5):503-13.
1995: Debashis Ghosh; Z Wawrzak; Vladimir Pletnev; N Li; R Kaiser; Walter Pangborn; Hans Jörnvall; Mary Erman; William L Duax
Structure of uncomplexed and linoleate-bound Candida cylindracea cholesterol esterase.
Structure (London, England : 1993) 1995;3(3):279-88.
1993: R Miller; N M Galitsky; William L Duax; David A Langs; Vladimir Pletnev; Vadim T Ivanov
Molecular structures of two crystalline forms of the cyclic heptapeptide antibiotic ternatin, cyclo[-beta-OH-D-Leu-D-Ile-(NMe)Ala-(NMe)Leu-Leu-(NMe)Ala-D-(NMe)Ala-].
International journal of peptide and protein research 1993;42(6):539-49.
1992: William L Duax; David A Langs; G D Smith; P Grochulski; Vladimir Pletnev; V Ivanov
Molecular structure and mechanisms of action of cyclic and linear ion transport antibiotics.
Bioorganicheskaia khimiia 1992;18(10-11):1341-60.
1992: Vladimir Pletnev; Vadim T Ivanov; David A Langs; P Strong; William L Duax
Crystal and molecular structure of the depsipeptide ionophore hexadecaisoleucinomycin, cyclo-[(D-Ile-L-Lac-L-Ile-D-Hyi)4-] (C80H136N8O24).
Biopolymers 1992;32(7):819-27.
1992: P Grochulski; G D Smith; David A Langs; William L Duax; Vladimir Pletnev; Vadim T Ivanov
Molecular structure of cyclo[-(D-Val-L-Hyi-L-Val-D-Hyi)2-] revealed by x-ray analysis.
Biopolymers 1992;32(7):757-64.
1992: Vladimir Pletnev; I N Tsygannik; Iu D Fonarev; Vadim T Ivanov; D A Lengs; P Grokhul'skiĭ; V L Dukes
[Structure of macrocyclic K+, Rb+-complexon of meso-valinomycin monohydrate, cyclo[-(D-Val-Hyi-Val-D-Hyi)3-].H2O, in a crystalline complex with dioxane by x-ray structural data].
Bioorganicheskaia khimiia 1992;18(6):794-801.
1991: Vladimir Pletnev; I N Tsygannik; I Iu Mikhaĭlova; Vadim T Ivanov; D A Lengs; P Grokhul'skiĭ; V L Diuéks
[Crystallization and molecular structure of cyclic dodecadepsipeptide cyclo]D-Val-D-Hyi-Val-Hyi-(D-Val-Hyi-Val-D-Hyi)2-].2C3H60].
Bioorganicheskaia khimiia 1991;17(3):359-71.
1991: David A Langs; P Grochulski; William L Duax; Vladimir Pletnev; Vadim T Ivanov
Molecular conformation of a D,L stereoisomeric analogue of valinomycin, cyclo[-(L-Val-L-Hyi-L-Val-D-Hyi)2-(D-Val-L-Hyi-L-Val-D-Hyi)-].
Biopolymers 1991;31(4):417-23.
1991: Vladimir Pletnev; V T Ivanova; David A Langs; P Grochulski; William L Duax
The structure of [D-Hyi2,L-Hyi4]meso-valinomycin revealed by X-ray analysis.
Biopolymers 1991;31(4):409-15.
1989: William L Duax; David A Langs; Walter Pangborn; G D Smith; Vladimir Pletnev; Vadim T Ivanov
Molecular conformation and ion transport of cyclic and linear ionophores.
Journal of molecular graphics 1989;7(2):82-6, 99.