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Sylvia Plevritis

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Elizabeth A Schackmann; Meredith A Mills; Diego F Munoz; Sylvia K Plevritis; Allison W Kurian
Feasibility evaluation of an online tool to guide decisions for BRCA1/2 mutation carriers.
Michael Green; Erik S Hopmans; Jonathan Irish; Hanlee Ji; Itai Kela; Shingo Kihira; Ronald Levy; Chih Long Liu; June H Myklebust; Ramesh V Nair; Sylvia K Plevritis; Andrew Gentles; Ash A Alizadeh
Hierarchy in somatic mutations arising during genomic evolution and progression of follicular lymphoma.
Olivier Gevaert; Sylvia K Plevritis
Identifying master regulators of cancer and their downstream targets by integrating genomic and epigenomic features.

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All Publications

2013: Elizabeth A Schackmann; Meredith A Mills; Diego F Munoz; Sylvia K Plevritis; Allison W Kurian
Feasibility evaluation of an online tool to guide decisions for BRCA1/2 mutation carriers.
Familial cancer 2013;12(1):65-73.
2013: Michael Green; Erik S Hopmans; Jonathan Irish; Hanlee Ji; Itai Kela; Shingo Kihira; Ronald Levy; Chih Long Liu; June H Myklebust; Ramesh V Nair; Sylvia K Plevritis; Andrew Gentles; Ash A Alizadeh
Hierarchy in somatic mutations arising during genomic evolution and progression of follicular lymphoma.
Blood 2013;121(9):1604-11.
2013: Olivier Gevaert; Sylvia K Plevritis
Identifying master regulators of cancer and their downstream targets by integrating genomic and epigenomic features.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2013;():123-34.
2013: Peng Qiu; Sylvia K Plevritis
TreeVis: a MATLAB-based tool for tree visualization.
Computer methods and programs in biomedicine 2013;109(1):74-6.
2012: Silvestre Vicent; Yue Xu; Yanyan Zheng; Dedeepya Vaka; Atul J Butte; Ron Chen; Nicole Clarke; Olivier Gevaert; Anna K Gillespie; Chuong D Hoang; Purvesh Khatri; Sylvia K Plevritis; Leanne C Sayles; Joseph Shrager; Eric A. Sweet-Cordero
Cross-species functional analysis of cancer-associated fibroblasts identifies a critical role for CLCF1 and IL-6 in non-small cell lung cancer in vivo.
Cancer research 2012;72(22):5744-56.
2012: Michael D Linderman; Teresa H Meng; Zach Bjornson; Robert V Bruggner; Sylvia K Plevritis; Peng Qiu; Ketaki Sheode; Erin F Simonds; Garry P Nolan
CytoSPADE: high-performance analysis and visualization of high-dimensional cytometry data.
Bioinformatics (Oxford, England) 2012;28(18):2400-1.
2012: Olivier Gevaert; Chuong D Hoang; Ann N Leung; Sandy Napel; Andrew Quon; Daniel L Rubin; Jiajing Xu; Yue Xu; Sylvia K Plevritis
Non-small cell lung cancer: identifying prognostic imaging biomarkers by leveraging public gene expression microarray data--methods and preliminary results.
Radiology 2012;264(2):387-96.
2012: Viswam S Nair; Sandy Napel; Andrew Quon; Daniel L Rubin; Joseph B Shrager; Guido Davidzon; Olivier Gevaert; Edward E Graves; Chuong D Hoang; Sylvia K Plevritis
Prognostic PET 18F-FDG uptake imaging features are associated with major oncogenomic alterations in patients with resected non-small cell lung cancer.
Cancer research 2012;72(15):3725-34.
2012: Bronislava M Sigal; Allison W Kurian; Diego F Munoz; Sylvia K Plevritis
A simulation model to predict the impact of prophylactic surgery and screening on the life expectancy of BRCA1 and BRCA2 mutation carriers.
Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 2012;21(7):1066-77.
2012: Kian Kani; Jonathan E Katz; Roland Luethy; Martin W McIntosh; Sharon J Pitteri; Sylvia K Plevritis; Joanna Schmidt; Babak Shahbaba; Qing Zhang; Wenxuan Zhang; David B Agus; Jonathan Erde; Vitor M Faca; Qiaojun Fang; Mitchell E Gross; Samir Hanash; Lindsey D Hughes; Anjali Jain; Parag Mallick
Quantitative proteomic profiling identifies protein correlates to EGFR kinase inhibition.
Molecular cancer therapeutics 2012;11(5):1071-81.
2012: Allison W Kurian; Meredith A Mills; Diego F Munoz; Peter Rust; Elizabeth A Schackmann; Michael Smith; Lauren Clarke; Sylvia K Plevritis
Online tool to guide decisions for BRCA1/2 mutation carriers.
Journal of clinical oncology : official journal of the American Society of Clinical Oncology 2012;30(5):497-506.
2012: Ray S Lin; Sylvia K Plevritis
Comparing the benefits of screening for breast cancer and lung cancer using a novel natural history model.
Cancer causes & control : CCC 2012;23(1):175-85.
2011: Peng Qiu; Sylvia K Plevritis
Reconstructing directed signed gene regulatory network from microarray data.
IEEE transactions on bio-medical engineering 2011;58(12):3518-21.
2011: Peter S Choi; Stacey J Adam; Pavan Bachireddy; Andrew Gentles; Sylvia K Plevritis; Kavya Rakhra; Jan van Riggelen; Dean W Felsher
Lymphomas that recur after MYC suppression continue to exhibit oncogene addiction.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(42):17432-7.
2011: Jeanne S Mandelblatt; Sylvia K Plevritis; Clyde Schechter; Natasha K Stout; Nicolien T van Ravesteyn; Marvin Zelen; Donald A Berry; Yaojen Chang; Kathleen A Cronin; Harry J de Koning; Sandra J Lee; Eric J Feuer
Modeling the impact of population screening on breast cancer mortality in the United States.
Breast (Edinburgh, Scotland) 2011;20 Suppl 3():S75-81.
2011: Peng Qiu; Karen Sachs; Erin F Simonds; Sean C Bendall; Robert V Bruggner; Kenneth D Gibbs; Michael D Linderman; Garry P Nolan; Sylvia K Plevritis
Extracting a cellular hierarchy from high-dimensional cytometry data with SPADE.
Nature biotechnology 2011;29(10):886-91.
2011: Ash A Alizadeh; Javier Briones; Randy D Gascoyne; Andrew Gentles; Matthew J Goldstein; Roch Houot; Holbrook E Kohrt; Chih Long Liu; Izidore S Lossos; June H Myklebust; Yasodha Natkunam; Sylvia K Plevritis; Robert J Tibshirani; Shuchun Zhao; Ranjana Advani; Alvaro J Alencar; Ronald Levy
Prediction of survival in diffuse large B-cell lymphoma based on the expression of 2 genes reflecting tumor and microenvironment.
Blood 2011;118(5):1350-8.
2011: Sean C Bendall; Erin F Simonds; Peng Qiu; El-ad D Amir; Peter O Krutzik; Rachel Finck; Robert V Bruggner; Rachel Melamed; Angelica Trejo; Olga I Ornatsky; Robert S Balderas; Sylvia K Plevritis; Karen Sachs; Dana Pe'er; Scott D Tanner; Garry P Nolan
Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum.
Science (New York, N.Y.) 2011;332(6030):687-96.
2011: Peng Qiu; Andrew Gentles; Sylvia K Plevritis
Discovering biological progression underlying microarray samples.
PLoS computational biology 2011;7(4):e1001123.
2010: Andrew J Gentles; Sylvia K Plevritis; Ravindra Majeti; Ash A Alizadeh
Association of a leukemic stem cell gene expression signature with clinical outcomes in acute myeloid leukemia.
JAMA : the journal of the American Medical Association 2010;304(24):2706-15.
2010: Stephanie L Bailey; Bronislava M Sigal; Sylvia K Plevritis
A simulation model investigating the impact of tumor volume doubling time and mammographic tumor detectability on screening outcomes in women aged 40-49 years.
Journal of the National Cancer Institute 2010;102(16):1263-71.
2010: Christoph I Lee; Emily B Tsai; Bronislava M Sigal; Sylvia K Plevritis; Alan M Garber; Geoffrey D Rubin
Incidental extracardiac findings at coronary CT: clinical and economic impact.
AJR. American journal of roentgenology 2010;194(6):1531-8.
2010: Debashis Sahoo; Jun Seita; Deepta Bhattacharya; Matthew A Inlay; Irving L Weissman; Sylvia K Plevritis; David L Dill
MiDReG: a method of mining developmentally regulated genes using Boolean implications.
Proceedings of the National Academy of Sciences of the United States of America 2010;107(13):5732-7.
2010: Peng Qiu; Andrew Gentles; Sylvia K Plevritis
Reducing the computational complexity of information theoretic approaches for reconstructing gene regulatory networks.
Journal of computational biology : a journal of computational molecular cell biology 2010;17(2):169-76.
2010: Allison W Kurian; Bronislava M Sigal; Sylvia K Plevritis
Survival analysis of cancer risk reduction strategies for BRCA1/2 mutation carriers.
Journal of clinical oncology : official journal of the American Society of Clinical Oncology 2010;28(2):222-31.
2009: Jeanne S Mandelblatt; Kathleen A Cronin; Stephanie Bailey; Donald A Berry; Harry J de Koning; Gerrit Draisma; Hui Huang; Sandra J Lee; Mark Munsell; Sylvia K Plevritis; Peter M Ravdin; Clyde Schechter; Bronislava Sigal; Michael A Stoto; Natasha K Stout; Nicolien T van Ravesteyn; John Venier; Marvin Zelen; Eric J Feuer
Effects of mammography screening under different screening schedules: model estimates of potential benefits and harms.
Annals of internal medicine 2009;151(10):738-47.
2009: Maksim A Pashkevich; Bronislava M Sigal; Sylvia K Plevritis
Modeling the transition of lung cancer from early to advanced stage.
Cancer causes & control : CCC 2009;20(9):1559-69.
2009: Matthew A Inlay; Deepta Bhattacharya; Debashis Sahoo; Thomas Serwold; Jun Seita; Holger Karsunky; Sylvia K Plevritis; David L Dill; Irving L Weissman
Ly6d marks the earliest stage of B-cell specification and identifies the branchpoint between B-cell and T-cell development.
Genes & development 2009;23(20):2376-81.
2009: Andrew Gentles; Ash A Alizadeh; Su-In Lee; June H Myklebust; Catherine M Shachaf; Babak Shahbaba; Ronald Levy; Daphne Koller; Sylvia K Plevritis
A pluripotency signature predicts histologic transformation and influences survival in follicular lymphoma patients.
Blood 2009;114(15):3158-66.
2009: Peng Qiu; Sylvia K Plevritis
Simultaneous class discovery and classification of microarray data using spectral analysis.
Journal of computational biology : a journal of computational molecular cell biology 2009;16(7):935-44.
2009: Peng Qiu; Andrew Gentles; Sylvia K Plevritis
Fast calculation of pairwise mutual information for gene regulatory network reconstruction.
Computer methods and programs in biomedicine 2009;94(2):177-80.
2009: Karen Sachs; Andrew Gentles; Ryan Youland; Solomon Itani; Jonathan Irish; Garry P Nolan; Sylvia K Plevritis
Characterization of patient specific signaling via augmentation of Bayesian networks with disease and patient state nodes.
Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference 2009;2009():6624-7.
2008: Catherine M Shachaf; Andrew Gentles; Sailaja Elchuri; Debashis Sahoo; Yoav Soen; Orr Sharpe; Omar D Perez; Maria Chang; Dennis Mitchel; William H Robinson; David Dill; Garry P Nolan; Sylvia K Plevritis; Dean W Felsher
Genomic and proteomic analysis reveals a threshold level of MYC required for tumor maintenance.
Cancer research 2008;68(13):5132-42.
2008: Debashis Sahoo; David L Dill; Andrew Gentles; Robert Tibshirani; Sylvia K Plevritis
Boolean implication networks derived from large scale, whole genome microarray datasets.
Genome biology 2008;9(10):R157.
2007: Pejman Ghanouni; Allison W Kurian; Daniel Margolis; Anne-Renee Hartman; Meredith A Mills; Sylvia K Plevritis; James M Ford; Bruce L Daniel
Ductal pattern enhancement on magnetic resonance imaging of the breast due to ductal lavage.
The breast journal 2007;13(3):281-6.
2007: Sylvia K Plevritis; Peter Salzman; Bronislava M Sigal; Peter W Glynn
A natural history model of stage progression applied to breast cancer.
Statistics in medicine 2007;26(3):581-95.
2007: Debashis Sahoo; David L Dill; Robert Tibshirani; Sylvia K Plevritis
Extracting binary signals from microarray time-course data.
Nucleic acids research 2007;35(11):3705-12.
2006: Sylvia K Plevritis; Allison W Kurian; Bronislava M Sigal; Bruce L Daniel; Debra M Ikeda; Frank E Stockdale; Alan M Garber
Cost-effectiveness of screening BRCA1/2 mutation carriers with breast magnetic resonance imaging.
JAMA : the journal of the American Medical Association 2006;295(20):2374-84.
2006: Kathleen A Cronin; Eric J Feuer; Lauren D Clarke; Sylvia K Plevritis
Impact of adjuvant therapy and mammography on U.S. mortality from 1975 to 2000: comparison of mortality results from the cisnet breast cancer base case analysis.
Journal of the National Cancer Institute. Monographs 2006;(36):112-21.
2006: Lauren D Clarke; Sylvia K Plevritis; Rob Boer; Kathleen A Cronin; Eric J Feuer
A comparative review of CISNET breast models used to analyze U.S. breast cancer incidence and mortality trends.
Journal of the National Cancer Institute. Monographs 2006;(36):96-105.
2006: Sylvia K Plevritis; Bronislava M Sigal; Peter Salzman; Jarrett Rosenberg; Peter W Glynn
A stochastic simulation model of U.S. breast cancer mortality trends from 1975 to 2000.
Journal of the National Cancer Institute. Monographs 2006;(36):86-95.
2005: Donald A Berry; Kathleen A Cronin; Sylvia K Plevritis; Dennis G Fryback; Lauren Clarke; Marvin Zelen; Jeanne S Mandelblatt; Andrei Y Yakovlev; J Dik F Habbema; Eric J Feuer
Effect of screening and adjuvant therapy on mortality from breast cancer.
The New England journal of medicine 2005;353(17):1784-92.
2005: Michelle N Mariano; Maurice A A J van den Bosch; Bruce L Daniel; Kent W Nowels; Robyn L Birdwell; Kathy J Fong; Pam S Desmond; Sylvia K Plevritis; Lara A Stables; Marowan Zakhour; Robert J Herfkens; Debra M Ikeda
Contrast-enhanced MRI of ductal carcinoma in situ: characteristics of a new intensity-modulated parametric mapping technique correlated with histopathologic findings.
Journal of magnetic resonance imaging : JMRI 2005;22(4):520-6.
2005: Sylvia K Plevritis
Decision analysis and simulation modeling for evaluating diagnostic tests on the basis of patient outcomes.
AJR. American journal of roentgenology 2005;185(3):581-90.
2005: Allison W Kurian; Anne-Renee Hartman; Meredith A Mills; James M Ford; Bruce L Daniel; Sylvia K Plevritis
Opinions of women with high inherited breast cancer risk about prophylactic mastectomy: an initial evaluation from a screening trial including magnetic resonance imaging and ductal lavage.
Health expectations : an international journal of public participation in health care and health policy 2005;8(3):221-33.
2005: Maurice A A J van den Bosch; Bruce L Daniel; Michelle N Mariano; Kent N Nowels; Robyn L Birdwell; Kathy J Fong; Pam S Desmond; Sylvia K Plevritis; Lara A Stables; Marowan Zakhour; Robert J Herfkens; Debra M Ikeda
Magnetic resonance imaging characteristics of fibrocystic change of the breast.
Investigative radiology 2005;40(7):436-41.
2005: Allison W Kurian; Meredith A Mills; Margo Jaffee; Bronislava M Sigal; Nicolette M Chun; Kerry E Kingham; Laura C Collins; Kent W Nowels; Sylvia K Plevritis; Judy E Garber; James M Ford; Anne-Renee Hartman
Ductal lavage of fluid-yielding and non-fluid-yielding ducts in BRCA1 and BRCA2 mutation carriers and other women at high inherited breast cancer risk.
Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 2005;14(5):1082-9.
2005: Jarrett Rosenberg; Yen Lin Chia; Sylvia K Plevritis
The effect of age, race, tumor size, tumor grade, and disease stage on invasive ductal breast cancer survival in the U.S. SEER database.
Breast cancer research and treatment 2005;89(1):47-54.
2004: Rob Boer; Sylvia K Plevritis; Lauren Clarke
Diversity of model approaches for breast cancer screening: a review of model assumptions by the Cancer Intervention and Surveillance Network (CISNET) Breast Cancer Groups.
Statistical methods in medical research 2004;13(6):525-38.
2004: Yen Lin Chia; Peter Salzman; Sylvia K Plevritis; Peter W Glynn
Simulation-based parameter estimation for complex models: a breast cancer natural history modelling illustration.
Statistical methods in medical research 2004;13(6):507-24.
2004: Anne-Renee Hartman; Bruce L Daniel; Allison W Kurian; Meredith A Mills; Kent W Nowels; Frederick M Dirbas; Kerry E Kingham; Nicolette M Chun; Robert J Herfkens; James M Ford; Sylvia K Plevritis
Breast magnetic resonance image screening and ductal lavage in women at high genetic risk for breast carcinoma.
Cancer 2004;100(3):479-89.
2002: Sylvia K Plevritis; Debra M Ikeda
Ethical issues in contrast-enhanced magnetic resonance imaging screening for breast cancer.
Topics in magnetic resonance imaging : TMRI 2002;13(2):79-84.
2001: Sylvia K Plevritis
A mathematical algorithm that computes breast cancer sizes and doubling times detected by screening.
Mathematical biosciences 2001;171(2):155-78.
2001: S P Miró; Ann N Leung; Geoffrey D Rubin; Y H Choi; Stephen T Kee; Robert E Mindelzun; P Stark; Lewis Wexler; Sylvia K Plevritis; B J Betts
Digital storage phosphor chest radiography: an ROC study of the effect of 2K versus 4K matrix size on observer performance.
Radiology 2001;218(2):527-32.
2000: Sylvia K Plevritis
A framework for evaluating the cost-effectiveness of MRI screening for breast cancer.
European radiology 2000;10 Suppl 3():S430-2.
1999: Sylvia K Plevritis
Modeling disease progression in outcomes research.
Academic radiology 1999;6 Suppl 1():S132-3.
1998: Bruce L Daniel; Yi-Fen Yen; Gary H Glover; Debra M Ikeda; Robyn L Birdwell; Anne Sawyer-Glover; JW Black; Sylvia K Plevritis; Stefanie S Jeffrey; Robert J Herfkens
Breast disease: dynamic spiral MR imaging.
Radiology 1998;209(2):499-509.
1995: Sylvia K Plevritis; Albert Macovski
MRS imaging using anatomically based k-space sampling and extrapolation.
Magnetic resonance in medicine : official journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine 1995;34(5):686-93.