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Olivier Poch

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Evolution, Molecular

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TOP 3
Florence Bedez; Xavier Brochet; Odile Lecompte; Benjamin Linard; Dino Moras; Raymond Ripp; Julie D Thompson; Olivier Poch
Functional insights into the core-TFIIH from a comparative survey.
Christina Zeitz; Aline Antonio; Claire Audier; Shomi S Bhattacharya; Béatrice Bocquet; Kinga Bujakowska; Hélène Dollfus; Christian P Hamel; Samuel G Jacobson; Susanne Kohl; Marie-Elise Lancelot; Odile Lecompte; Mélanie Letexier; Tien D Luu; Christelle Michiels; Marion Neuillé; Hoan Nguyen; Elise Orhan; Olivier Poch; José-Alain Sahel; Jean-Paul Saraiva; Sharon B Schwartz; Florian Sennlaub; Xavier Zanlonghi; Isabelle Audo
Whole-exome sequencing identifies LRIT3 mutations as a cause of autosomal-recessive complete congenital stationary night blindness.
Hoan Nguyen; Olivier Poch; Tien-Dao Luu; Julie D Thompson
Knowledge discovery in variant databases using inductive logic programming.

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All Publications

2013: Florence Bedez; Xavier Brochet; Odile Lecompte; Benjamin Linard; Dino Moras; Raymond Ripp; Julie D Thompson; Olivier Poch
Functional insights into the core-TFIIH from a comparative survey.
Genomics 2013;101(3):178-86.
2013: Christina Zeitz; Aline Antonio; Claire Audier; Shomi S Bhattacharya; Béatrice Bocquet; Kinga Bujakowska; Hélène Dollfus; Christian P Hamel; Samuel G Jacobson; Susanne Kohl; Marie-Elise Lancelot; Odile Lecompte; Mélanie Letexier; Tien D Luu; Christelle Michiels; Marion Neuillé; Hoan Nguyen; Elise Orhan; Olivier Poch; José-Alain Sahel; Jean-Paul Saraiva; Sharon B Schwartz; Florian Sennlaub; Xavier Zanlonghi; Isabelle Audo
Whole-exome sequencing identifies LRIT3 mutations as a cause of autosomal-recessive complete congenital stationary night blindness.
American journal of human genetics 2013;92(1):67-75.
2013: Hoan Nguyen; Olivier Poch; Tien-Dao Luu; Julie D Thompson
Knowledge discovery in variant databases using inductive logic programming.
Bioinformatics and biology insights 2013;7():119-31.
2012: Tien-Dao Luu; Luc Moulinier; Jean Muller; Odile Lecompte; Benjamin Linard; Olivier Poch; Laetitia Poidevin; Wolfgang Raffelsberger; Raymond Ripp; Alin Rusu; Julie D Thompson; Vincent Walter; Nicolas Wicker; Hoan Nguyen
KD4v: Comprehensible Knowledge Discovery System for Missense Variant.
Nucleic acids research 2012;40(Web Server issue):W71-5.
2012: Céline Jaillard; Bernd Kinzel; Irene Lee-Rivera; Najate Aït-Ali; Jean Bennett; Emmanuelle Clérin; Thérèse Cronin; Pierre-Marie Lledo; Géraldine Millet-Puel; Aurélie Mouret; Marie-Laure Niepon; Olivier Poch; Wolfgang Raffelsberger; José-Alain Sahel; Tina Sedmak; Alain Trembleau; Uwe Wolfrum; Ying Yang; Thierry Léveillard
Nxnl2 splicing results in dual functions in neuronal cell survival and maintenance of cell integrity.
Human molecular genetics 2012;21(10):2298-311.
2012: Jan Brants; Annaïck Carles; Jan de Mey; Olivier Poch; Karine Pradeau-Aubreton; Aude Robert; Jack A Schalken; Kostyantyn Semenchenko; Christine Wasylyk; Alberto Zambrano; Catherine Birck; Bohdan Wasylyk
Tubulin tyrosine ligase like 12, a TTLL family member with SET- and TTL-like domains and roles in histone and tubulin modifications and mitosis.
PloS one 2012;7(12):e51258.
2012: Laurent Bianchetti; Rémi Féderkeil; David Kieffer; Olivier Poch
Increased frequency of single base substitutions in a population of transcripts expressed in cancer cells.
BMC cancer 2012;12():509.
2012: Krishanpal Anamika; Olivier Poch; Laetitia Poidevin; Àkos Gyenis; Làszlò Tora
RNA polymerase II pausing downstream of core histone genes is different from genes producing polyadenylated transcripts.
PloS one 2012;7(6):e38769.
2012: Tien-Dao Luu; Luc Moulinier; Jean Muller; Olivier Poch; Raymond Ripp; Alin-Mihai Rusu; Julie D Thompson; Thierry Toursel; Vincent Walter; Hoan Nguyen
MSV3d: database of human MisSense Variants mapped to 3D protein structure.
Database : the journal of biological databases and curation 2012;2012():bas018.
2012: Didier Jollivet; Isabelle Boutet; Eric Fontanillas; Nicolas Gagnière; Stéphane Hourdez; Jean Mary; Olivier Poch; Béatrice Segurens; Arnaud Tanguy; Jean Weissenbach; Odile Lecompte
Proteome adaptation to high temperatures in the ectothermic hydrothermal vent Pompeii worm.
PloS one 2012;7(2):e31150.
2012: Benjamin Linard; Ngoc Hoan Nguyen; Olivier Poch; Francisco Prosdocimi; Julie D Thompson
EvoluCode: Evolutionary Barcodes as a Unifying Framework for Multilevel Evolutionary Data.
Evolutionary bioinformatics online 2012;8():61-77.
2012: Francisco Prosdocimi; Benjamin Linard; Olivier Poch; Pierre Pontarotti; Julie D Thompson
Controversies in modern evolutionary biology: the imperative for error detection and quality control.
BMC genomics 2012;13():5.
2012: Eric Guérin; Annette K Larsen; Armin Maier; Dino Moras; Agnès Neuville; Pierre Oudet; Erwan Pencreach; Amélie Petitprez; Olivier Poch; Wolfgang Raffelsberger; Serge Rohr; Anne Schneider; Philippe Bachellier; Marie-Pierre Gaub; Dominique Guenot
In vivo topoisomerase I inhibition attenuates the expression of hypoxia-inducible factor 1α target genes and decreases tumor angiogenesis.
Molecular medicine (Cambridge, Mass.) 2012;18():83-94.
2011: Agnès Bloch-Zupan; Christelle Etard; Véronique Geoffroy; Xavier Jamet; Virginie Laugel; Vincent Marion; Jean Muller; Valérie Pelletier; Olivier Poch; Corinne Stoetzel; Uwe Strahle; Jean-Pierre Strauss; Hélène Dollfus
Homozygosity mapping and candidate prioritization identify mutations, missed by whole-exome sequencing, in SMOC2, causing major dental developmental defects.
American journal of human genetics 2011;89(6):773-81.
2011: Sébastien Lalevée; Vincent Laudet; Odile Lecompte; Olivier Poch; Yannick N Anno; Gerard Benoit; Amandine Chatagnon; Eric Samarut; Cécile Rochette-Egly
Genome-wide in silico identification of new conserved and functional retinoic acid receptor response elements (direct repeats separated by 5 bp).
The Journal of biological chemistry 2011;286(38):33322-34.
2011: Joachim Lupberger; Mirjam B Zeisel; Fei Xiao; Christine Thumann; Isabel Fofana; Laetitia Zona; Christopher Davis; Christopher J Mee; Marine Turek; Sebastian Gorke; Cathy Royer; Benoit Fischer; Muhammad N Zahid; Dimitri Lavillette; Judith Fresquet; François-Loïc Cosset; S Michael Rothenberg; Thomas Pietschmann; Arvind H Patel; Patrick Pessaux; Michel Doffoël; Wolfgang Raffelsberger; Olivier Poch; Jane A McKeating; Laurent Brino; Thomas F Baumert
EGFR and EphA2 are host factors for hepatitis C virus entry and possible targets for antiviral therapy.
Nature medicine 2011;17(5):589-95.
2011: Yannick-Noël Anno; Evelyne Myslinski; Richard Patryk Ngondo-Mbongo; Alain Krol; Olivier Poch; Odile Lecompte; Philippe Carbon
Genome-wide evidence for an essential role of the human Staf/ZNF143 transcription factor in bidirectional transcription.
Nucleic acids research 2011;39(8):3116-27.
2011: Emmanuelle Clérin; Saddek Mohand-Saïd; Olivier Poch; José-Alain Sahel; Nicolas Wicker; Thierry Léveillard
℮-conome: an automated tissue counting platform of cone photoreceptors for rodent models of retinitis pigmentosa.
BMC ophthalmology 2011;11():38.
2011: Julie D Thompson; Benjamin Linard; Odile Lecompte; Olivier Poch
A comprehensive benchmark study of multiple sequence alignment methods: current challenges and future perspectives.
PloS one 2011;6(3):e18093.
2011: Benjamin Linard; Julie D Thompson; Olivier Poch; Odile Lecompte
OrthoInspector: comprehensive orthology analysis and visual exploration.
BMC bioinformatics 2011;12():11.
2011: Laurent-Philippe Albou; Olivier Poch; Dino Moras
M-ORBIS: mapping of molecular binding sites and surfaces.
Nucleic acids research 2011;39(1):30-43.
2010: Mohamed Radhouene Aniba; Olivier Poch; Julie D Thompson
Issues in bioinformatics benchmarking: the case study of multiple sequence alignment.
Nucleic acids research 2010;38(21):7353-63.
2010: Isabelle Audo; Anne Friedrich; Saddek Mohand-Saïd; Marie-Elise Lancelot; Aline Antonio; Veselina Moskova-Doumanova; Olivier Poch; Shomi Bhattacharya; José-Alain Sahel; Christina Zeitz
An unusual retinal phenotype associated with a novel mutation in RHO.
Archives of ophthalmology 2010;128(8):1036-45.
2010: T Cronin; W Raffelsberger; I Lee-Rivera; C Jaillard; M-L Niepon; B Kinzel; E Clérin; A Petrosian; Serge Picaud; Olivier Poch; José-Alain Sahel; Thierry Léveillard
The disruption of the rod-derived cone viability gene leads to photoreceptor dysfunction and susceptibility to oxidative stress.
Cell death and differentiation 2010;17(7):1199-210.
2010: Claude Berge; Nicolas FROLOFF; Ravi Kiran Reddy Kalathur; Myriam Maumy; Olivier Poch; Wolfgang Raffelsberger; Nicolas Wicker
Multidimensional fitting for multivariate data analysis.
Journal of computational biology : a journal of computational molecular cell biology 2010;17(5):723-32.
2010: Jean Muller; Corinne Stoetzel; M C Vincent; Carmen C Leitch; Virginie Laurier; Jean-Marc Danse; S Hellé; V Marion; V Bennouna-Greene; S Vicaire; A Megarbane; Josseline Kaplan; V Drouin-Garraud; M Hamdani; Sabine Sigaudy; C Francannet; J Roume; Pierre Bitoun; A Goldenberg; N Philip; S Odent; J Green; Mireille Cossée; Erica E Davis; Nicholas Katsanis; Dominique Bonneau; Alain Verloes; Olivier Poch; Jean-Louis Mandel; Hélène Dollfus
Identification of 28 novel mutations in the Bardet-Biedl syndrome genes: the burden of private mutations in an extensively heterogeneous disease.
Human genetics 2010;127(5):583-93.
2010: Anne Friedrich; Nicolas Garnier; Nicolas Gagnière; Hoan Nguyen; Laurent-Philippe Albou; Valérie Biancalana; Emmanuel Bettler; Gilbert Deléage; Odile Lecompte; Jean Muller; Dino Moras; Jean-Louis Mandel; Thierry Toursel; Luc Moulinier; Olivier Poch
SM2PH-db: an interactive system for the integrated analysis of phenotypic consequences of missense mutations in proteins involved in human genetic diseases.
Human mutation 2010;31(2):127-35.
2010: Sacha Reichman; Ravi Kiran Reddy Kalathur; Sophie Lambard; Najate Aït-Ali; Yanjiang Yang; Aurélie Lardenois; Raymond Ripp; Olivier Poch; Donald J Zack; José-Alain Sahel; Thierry Léveillard
The homeobox gene CHX10/VSX2 regulates RdCVF promoter activity in the inner retina.
Human molecular genetics 2010;19(2):250-61.
2010: Nicolas Gagnière; Didier Jollivet; Isabelle Boutet; Yann Brélivet; Didier Busso; Corinne Da Silva; Françoise Gaill; Dominique Higuet; Stéphane Hourdez; Bernard Knoops; François Henri LALLIER; Emmanuelle Leize-Wagner; Jean Mary; Dino Moras; Emmanuel Perrodou; Jean-François Rees; Béatrice Segurens; Bruce Shillito; Arnaud Tanguy; Jean-Claude Thierry; Jean Weissenbach; Patrick Wincker; Franck Zal; Olivier Poch; Odile Lecompte
Insights into metazoan evolution from Alvinella pompejana cDNAs.
BMC genomics 2010;11():634.
2010: Krishanpal Anamika; Arnaud R Krebs; Julie Thompson; Olivier Poch; Didier Devys; Làszlò Tora
Lessons from genome-wide studies: an integrated definition of the coactivator function of histone acetyl transferases.
Epigenetics & chromatin 2010;3(1):18.
2009: Emese Gazdag; Angèle Santenard; Céline Ziegler-Birling; Gioia Altobelli; Olivier Poch; Làszlò Tora; Maria Elena Torres-Padilla
TBP2 is essential for germ cell development by regulating transcription and chromatin condensation in the oocyte.
Genes & development 2009;23(18):2210-23.
2009: Valentín Ruano-Rubio; Olivier Poch; julie thompson
Comparison of eukaryotic phylogenetic profiling approaches using species tree aware methods.
BMC bioinformatics 2009;10():383.
2009: Mohamed Radhouene Aniba; Sophie Siguenza; Anne Friedrich; Frédéric Plewniak; Olivier Poch; Aron Marchler-Bauer; julie thompson
Knowledge-based expert systems and a proof-of-concept case study for multiple sequence alignment construction and analysis.
Briefings in bioinformatics 2009;10(1):11-23.
2009: Sébastien Gallien; Emmanuel Perrodou; Christine Carapito; Caroline Deshayes; Jean-Marc Reyrat; Alain Van Dorsselaer; Olivier Poch; Christine Schaeffer; Odile Lecompte
Ortho-proteogenomics: multiple proteomes investigation through orthology and a new MS-based protocol.
Genome research 2009;19(1):128-35.
2008: J A J Becker; Katia Befort; C Blad; Dominique Filliol; A Ghate; D Dembele; C Thibault; M Koch; Jean Muller; A Lardenois; Olivier Poch; Jerome Becker
Transcriptome analysis identifies genes with enriched expression in the mouse central extended amygdala.
Neuroscience 2008;156(4):950-65.
2008: Clotilde Lagier-Tourenne; Meriem Tazir; Luis Lopez; Catarina M Quinzii; Mirna Assoum; Nathalie Drouot; Cleverson Busso; Samira Makri; Lamia Ali-Pacha; Traki Benhassine; Mathieu Anheim; David R Lynch; Christelle Thibault; Frédéric Plewniak; Laurent Bianchetti; Christine Tranchant; Olivier Poch; Salvatore DiMauro; Jean-Louis Mandel; Mario H Barros; Michio Hirano; Michel Koenig
ADCK3, an ancestral kinase, is mutated in a form of recessive ataxia associated with coenzyme Q10 deficiency.
American journal of human genetics 2008;82(3):661-72.
2008: Wolfgang Raffelsberger; Yannick Krause; Luc Moulinier; David Kieffer; Anne-Laure Morand; Laurent Brino; Olivier Poch
RReportGenerator: automatic reports from routine statistical analysis using R.
Bioinformatics (Oxford, England) 2008;24(2):276-8.
2008: Katia Befort; Dominique Filliol; E Darcq; A Ghate; Audrey Matifas; A Lardenois; Jean Muller; Christelle Thibault; D Dembele; Olivier Poch; Brigitte L Kieffer
Gene expression is altered in the lateral hypothalamus upon activation of the mu opioid receptor.
Annals of the New York Academy of Sciences 2008;1129():175-84.
2008: Ravi Kiran Reddy Kalathur; Nicolas Gagniere; Guillaume Berthommier; Laetitia Poidevin; Wolfgang Raffelsberger; Raymond Ripp; Thierry Léveillard; Olivier Poch
RETINOBASE: a web database, data mining and analysis platform for gene expression data on retina.
BMC genomics 2008;9():208.
2008: Emmanuel Perrodou; Claudia Chica; Olivier Poch; Toby J Gibson; julie thompson
A new protein linear motif benchmark for multiple sequence alignment software.
BMC bioinformatics 2008;9():213.
2008: Caroline Deshayes; Emmanuel Perrodou; Daniel Euphrasie; Eric Frapy; Olivier Poch; Pablo Bifani; Odile Lecompte; Reyrat Jean-Marc
Detecting the molecular scars of evolution in the Mycobacterium tuberculosis complex by analyzing interrupted coding sequences.
BMC evolutionary biology 2008;8():78.
2008: Markus Thiersch; Wolfgang Raffelsberger; Rico Frigg; Marijana Samardzija; Andreas Wenzel; Olivier Poch; Christian grimm, Prof Dr. Phil. Nat.
Analysis of the retinal gene expression profile after hypoxic preconditioning identifies candidate genes for neuroprotection.
BMC genomics 2008;9():73.
2008: Markus Thiersch; Wolfgang Raffelsberger; Enrico Frigg; Marijana Samardzija; Patricia Blank; Olivier Poch; Christian grimm, Prof Dr. Phil. Nat.
The hypoxic transcriptome of the retina: identification of factors with potential neuroprotective activity.
Advances in experimental medicine and biology 2008;613():75-85.
2007: Laurent Bianchetti; Yan Wu; Eric Guerin; Frédéric Plewniak; Olivier Poch
SAGETTARIUS: a program to reduce the number of tags mapped to multiple transcripts and to plan SAGE sequencing stages.
Nucleic acids research 2007;35(18):e122.
2007: Frédéric Chalmel; Thierry Léveillard; Céline Jaillard; Aurélie Lardenois; Naomi Berdugo; Emmanuelle Morel; Patrice Koehl; George Lambrou; Arne Holmgren; José-Alain Sahel; Olivier Poch
Rod-derived Cone Viability Factor-2 is a novel bifunctional-thioredoxin-like protein with therapeutic potential.
BMC molecular biology 2007;8():74.
2007: Jean Muller; André Mehlen; Guillaume Vetter; Mikalai Yatskou; Arnaud Muller; Frédéric Chalmel; Olivier Poch; Evelyne Friederich; Laurent Vallar
Design and evaluation of Actichip, a thematic microarray for the study of the actin cytoskeleton.
BMC genomics 2007;8():294.
2007: Nicolas Wicker; Annaïck Carles; Ian Mills; Maija Wolf; Abhi Veerakumarasivam; Henrik Edgren; Fabrice Boileau; Bohdan Wasylyk; Jack A Schalken; David E Neal; Olli Kallioniemi; Olivier Poch
A new look towards BAC-based array CGH through a comprehensive comparison with oligo-based array CGH.
BMC genomics 2007;8():84.
2007: Anne Friedrich; Raymond Ripp; Nicolas Garnier; Emmanuel Bettler; Gilbert Deléage; Olivier Poch; Luc Moulinier
Blast sampling for structural and functional analyses.
BMC bioinformatics 2007;8():62.
2007: Caroline Deshayes; Emmanuel Perrodou; Sebastien Gallien; Daniel Euphrasie; Christine Schaeffer; Alain Van Dorsselaer; Olivier Poch; Odile Lecompte; Reyrat Jean-Marc
Interrupted coding sequences in Mycobacterium smegmatis: authentic mutations or sequencing errors?
Genome biology 2007;8(2):R20.
2007: Corinne Stoetzel; Jean Muller; Virginie Laurier; Erica E Davis; Norann Zaghloul; Serge Vicaire; Cecile Jacquelin; Frédéric Plewniak; Carmen C Leitch; Pierre Sarda; Christian Hamel; T J L de Ravel; Richard Alan Lewis; Evelyne Friederich; Christelle Thibault; Jean-Marc Danse; Alain Verloes; Dominique Bonneau; Nicholas Katsanis; Olivier Poch; Jean-Louis Mandel; Hélène Dollfus
Identification of a novel BBS gene (BBS12) highlights the major role of a vertebrate-specific branch of chaperonin-related proteins in Bardet-Biedl syndrome.
American journal of human genetics 2007;80(1):1-11.
2007: Agatha Schlüter; Stéphane Fourcade; Enric Domènech-Estévez; Toni Gabaldón; Jaime Huerta-Cepas; Guillaume Berthommier; Raymond Ripp; Ronald J A Wanders; Olivier Poch; Aurora Pujol
PeroxisomeDB: a database for the peroxisomal proteome, functional genomics and disease.
Nucleic acids research 2007;35(Database issue):D815-22.
2006: Hélène Dollfus; Jean Muller; Corinne Stoetzel; Virginie Laurier; Dominique Bonneau; André Mégarbané; Olivier Poch; Jean-Louis Mandel
[Bardet-Biedl syndrome: a unique family for a major gene (BBS10)].
Médecine sciences : M/S 2006;22(11):901-4.
2006: Virginie Laurier; Corinne Stoetzel; Jean Muller; Christelle Thibault; Sandra Corbani; Nadine Jalkh; Nabiha Salem; Eliane Chouery; Olivier Poch; Serge Licaire; Jean-Marc Danse; Patrizia Amati-Bonneau; Dominique Bonneau; André Mégarbané; Jean-Louis Mandel; Hélène Dollfus
Pitfalls of homozygosity mapping: an extended consanguineous Bardet-Biedl syndrome family with two mutant genes (BBS2, BBS10), three mutations, but no triallelism.
European journal of human genetics : EJHG 2006;14(11):1195-203.
2006: Nicolas Garnier; A Friedrich; R Bolze; Emmanuel Bettler; Luc Moulinier; Christophe Geourjon; julie thompson; Gilbert Deléage; Olivier Poch
MAGOS: multiple alignment and modelling server.
Bioinformatics (Oxford, England) 2006;22(17):2164-5.
2006: Aurélie Lardenois; Frédéric Chalmel; Laurent Bianchetti; José-Alain Sahel; Thierry Léveillard; Olivier Poch
PromAn: an integrated knowledge-based web server dedicated to promoter analysis.
Nucleic acids research 2006;34(Web Server issue):W578-83.
2006: Emilie Gaillard; Nathalie Bruck; Yann Brelivet; Gaétan Bour; Sébastien Lalevée; Annie Bauer; Olivier Poch; Dino Moras; Cécile Rochette-Egly
Phosphorylation by PKA potentiates retinoic acid receptor alpha activity by means of increasing interaction with and phosphorylation by cyclin H/cdk7.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(25):9548-53.
2006: Agatha Schlüter; Stéphane Fourcade; Raymond Ripp; Jean-Louis Mandel; Olivier Poch; Aurora Pujol
The evolutionary origin of peroxisomes: an ER-peroxisome connection.
Molecular biology and evolution 2006;23(4):838-45.
2006: Annaïck Carles; Régine Millon; Anne Cromer; Gitali Ganguli; Frédéric Lemaire; Julia Young; Christine Wasylyk; Danièle Muller; I Schultz; Y Rabouel; Doulaye Dembélé; C Zhao; Patricia Marchal; C Ducray; L Bracco; Joseph Abecassis; Olivier Poch; Bohdan Wasylyk
Head and neck squamous cell carcinoma transcriptome analysis by comprehensive validated differential display.
Oncogene 2006;25(12):1821-31.
2006: Gretta Abou-Sleymane; Frédéric Chalmel; Dominique Helmlinger; Aurélie Lardenois; Christelle Thibault; Chantal Weber; Karine Mérienne; Jean-Louis Mandel; Olivier Poch; Didier Devys; Yvon Trottier
Polyglutamine expansion causes neurodegeneration by altering the neuronal differentiation program.
Human molecular genetics 2006;15(5):691-703.
2006: julie thompson; Arnaud Muller; Andrew Waterhouse; Jim Procter; Geoffrey J Barton; Frédéric Plewniak; Olivier Poch
MACSIMS: multiple alignment of complete sequences information management system.
BMC bioinformatics 2006;7():318.
2006: Emmanuel Perrodou; Caroline Deshayes; Jean Muller; Christine Schaeffer; Alain Van Dorsselaer; Raymond Ripp; Olivier Poch; Reyrat Jean-Marc; Odile Lecompte
ICDS database: interrupted CoDing sequences in prokaryotic genomes.
Nucleic acids research 2006;34(Database issue):D338-43.
2005: Jean Muller; Yukako Oma; Laurent Vallar; Evelyne Friederich; Olivier Poch; Barbara Winsor
Sequence and comparative genomic analysis of actin-related proteins.
Molecular biology of the cell 2005;16(12):5736-48.
2005: Muriel Uhring; Gilbert Bey; Odile Lecompte; Jean Cavarelli; Dino Moras; Olivier Poch
Cloning, purification and crystallization of a Walker-type Pyrococcus abyssi ATPase family member.
Acta crystallographica. Section F, Structural biology and crystallization communications 2005;61(Pt 10):925-7.
2005: julie thompson; Patrice Koehl; Raymond Ripp; Olivier Poch
BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark.
Proteins 2005;61(1):127-36.
2005: Laurent Bianchetti; julie thompson; Odile Lecompte; Frédéric Plewniak; Olivier Poch
vALId: validation of protein sequence quality based on multiple alignment data.
Journal of bioinformatics and computational biology 2005;3(4):929-47.
2005: Frédéric Chalmel; Aurélie Lardenois; julie thompson; Jean Muller; José-Alain Sahel; Thierry Léveillard; Olivier Poch
GOAnno: GO annotation based on multiple alignment.
Bioinformatics (Oxford, England) 2005;21(9):2095-6.
2005: Véronique Prigent; Jean-Claude Thierry; Olivier Poch; Frédéric Plewniak
DbW: automatic update of a functional family-specific multiple alignment.
Bioinformatics (Oxford, England) 2005;21(8):1437-42.
2005: julie thompson; Stephen R Holbrook; Kazutaka Katoh; Patrice Koehl; Dino Moras; Eric Westhof; Olivier Poch
MAO: a Multiple Alignment Ontology for nucleic acid and protein sequences.
Nucleic acids research 2005;33(13):4164-71.
2005: Thierry Léveillard; Saddek Mohand-Saïd; Olivier Poch; José-Alain Sahel
[Rod-derived cone viability factor: a clue for therapy of retinitis pigmentosa?].
Médecine sciences : M/S 2005;21(1):22-4.
2004: Anass Jawhari; Stéphanie Boussert; Valérie Lamour; R Andrew Atkinson; Bruno Kieffer; Olivier Poch; Noelle Potier; Alain Van Dorsselaer; Dino Moras; Arnaud Poterszman
Domain architecture of the p62 subunit from the human transcription/repair factor TFIIH deduced by limited proteolysis and mass spectrometry analysis.
Biochemistry 2004;43(45):14420-30.
2004: Thierry Léveillard; Saddek Mohand-Saïd; Olivier Lorentz; David Hicks; Anne-Claire Fintz; Emmanuelle Clérin; Manuel Simonutti; Valérie Forster; Nükhet Cavusoglu; Frédéric Chalmel; Pascal Dollé; Olivier Poch; George Lambrou; José-Alain Sahel
Identification and characterization of rod-derived cone viability factor.
Nature genetics 2004;36(7):755-9.
2004: Yann Brelivet; Sabrina Kammerer; Natacha Rochel; Olivier Poch; Dino Moras
Signature of the oligomeric behaviour of nuclear receptors at the sequence and structural level.
EMBO reports 2004;5(4):423-9.
2004: Anne Cromer; Annaïck Carles; Régine Millon; Gitali Ganguli; Frédéric Chalmel; Frédéric Lemaire; Julia Young; Doulaye Dembélé; Christelle Thibault; Danièle Muller; Olivier Poch; Joseph Abecassis; Bohdan Wasylyk
Identification of genes associated with tumorigenesis and metastatic potential of hypopharyngeal cancer by microarray analysis.
Oncogene 2004;23(14):2484-98.
2004: julie thompson; Véronique Prigent; Olivier Poch
LEON: multiple aLignment Evaluation Of Neighbours.
Nucleic acids research 2004;32(4):1298-307.
2003: Nükhet Cavusoglu; Danièle Thierse; Saddek Mohand-Saïd; Frédéric Chalmel; Olivier Poch; Alain Van Dorsselaer; José-Alain Sahel; Thierry Léveillard
Differential proteomic analysis of the mouse retina: the induction of crystallin proteins by retinal degeneration in the rd1 mouse.
Molecular & cellular proteomics : MCP 2003;2(8):494-505.
2003: Frédéric Plewniak; Laurent Bianchetti; Yann Brelivet; Annaïck Carles; Frédéric Chalmel; Odile Lecompte; Thiebaut Mochel; Luc Moulinier; Arnaud Muller; Jean Muller; Véronique Prigent; Raymond Ripp; Jean-Claude Thierry; julie thompson; Nicolas Wicker; Olivier Poch
PipeAlign: A new toolkit for protein family analysis.
Nucleic acids research 2003;31(13):3829-32.
2003: julie thompson; Jean-Claude Thierry; Olivier Poch
RASCAL: rapid scanning and correction of multiple sequence alignments.
Bioinformatics (Oxford, England) 2003;19(9):1155-61.
2003: Georges N Cohen; Valérie Barbe; Didier Flament; Michael Galperin; Roland Heilig; Odile Lecompte; Olivier Poch; Daniel Prieur; Joël Quérellou; Raymond Ripp; Jean-Claude Thierry; John van der Oost; Jean Weissenbach; Yvan Zivanovic; Patrick Forterre
An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssi.
Molecular microbiology 2003;47(6):1495-512.
2003: Devrim Gozuacik; MOUNIA CHAMI; David Lagorce; Jamila Faivre; Yoshiki Murakami; Olivier Poch; Esther Biermann; Rolf Knippers; Christian Bréchot; Patrizia Paterlini-Bréchot
Identification and functional characterization of a new member of the human Mcm protein family: hMcm8.
Nucleic acids research 2003;31(2):570-9.
2002: Odile Lecompte; Raymond Ripp; Jean-Claude Thierry; Dino Moras; Olivier Poch
Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale.
Nucleic acids research 2002;30(24):5382-90.
2002: Nicolas Wicker; Doulaye Dembele; Wolfgang Raffelsberger; Olivier Poch
Density of points clustering, application to transcriptomic data analysis.
Nucleic acids research 2002;30(18):3992-4000.
2002: Laurent Bianchetti; Claudine Oudet; Olivier Poch
M13 endopeptidases: New conserved motifs correlated with structure, and simultaneous phylogenetic occurrence of PHEX and the bony fish.
Proteins 2002;47(4):481-8.
2001: julie thompson; Frédéric Plewniak; Raymond Ripp; Jean-Claude Thierry; Olivier Poch
Towards a reliable objective function for multiple sequence alignments.
Journal of molecular biology 2001;314(4):937-51.
2001: Nicolas Wicker; G R Perrin; Jean-Claude Thierry; Olivier Poch
Secator: a program for inferring protein subfamilies from phylogenetic trees.
Molecular biology and evolution 2001;18(8):1435-41.
2001: Odile Lecompte; Raymond Ripp; V Puzos-Barbe; S Duprat; Roland Heilig; Jacques Dietrich; Jean-Claude Thierry; Olivier Poch
Genome evolution at the genus level: comparison of three complete genomes of hyperthermophilic archaea.
Genome research 2001;11(6):981-93.
2001: Odile Lecompte; julie thompson; Frédéric Plewniak; Jean-Claude Thierry; Olivier Poch
Multiple alignment of complete sequences (MACS) in the post-genomic era.
Gene 2001;270(1-2):17-30.
2001: A Bahr; julie thompson; Jean-Claude Thierry; Olivier Poch
BAliBASE (Benchmark Alignment dataBASE): enhancements for repeats, transmembrane sequences and circular permutations.
Nucleic acids research 2001;29(1):323-6.
2000: Frédéric Plewniak; julie thompson; Olivier Poch
Ballast: blast post-processing based on locally conserved segments.
Bioinformatics (Oxford, England) 2000;16(9):750-9.
2000: julie thompson; Frédéric Plewniak; Jean-Claude Thierry; Olivier Poch
DbClustal: rapid and reliable global multiple alignments of protein sequences detected by database searches.
Nucleic acids research 2000;28(15):2919-26.
2000: Yann-Gaël Gangloff; Sebastiaan Werten; Christophe Romier; L Carré; Olivier Poch; Dino Moras; Irwin Davidson
The human TFIID components TAF(II)135 and TAF(II)20 and the yeast SAGA components ADA1 and TAF(II)68 heterodimerize to form histone-like pairs.
Molecular and cellular biology 2000;20(1):340-51.
1999: JC Dantonel; Jean-Marie Wurtz; Olivier Poch; Dino Moras; Làszlò Tora
The TBP-like factor: an alternative transcription factor in metazoa?
Trends in biochemical sciences 1999;24(9):335-9.
1999: julie thompson; Frédéric Plewniak; Olivier Poch
A comprehensive comparison of multiple sequence alignment programs.
Nucleic acids research 1999;27(13):2682-90.
1999: Anne-Claire Lavigne; Yann-Gaël Gangloff; L Carré; Mengus Gabrielle; Catherine Birck; Olivier Poch; Christophe Romier; Dino Moras; Irwin Davidson
Synergistic transcriptional activation by TATA-binding protein and hTAFII28 requires specific amino acids of the hTAFII28 histone fold.
Molecular and cellular biology 1999;19(7):5050-60.
1999: julie thompson; Frédéric Plewniak; Olivier Poch
BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs.
Bioinformatics (Oxford, England) 1999;15(1):87-8.
1998: Catherine Birck; Olivier Poch; Christophe Romier; M Ruff; Mengus Gabrielle; Anne-Claire Lavigne; Irwin Davidson; Dino Moras
Human TAF(II)28 and TAF(II)18 interact through a histone fold encoded by atypical evolutionary conserved motifs also found in the SPT3 family.
Cell 1998;94(2):239-49.
1998: Irwin Davidson; Christophe Romier; Anne-Claire Lavigne; Catherine Birck; Mengus Gabrielle; Olivier Poch; Dino Moras
Functional and structural analysis of the subunits of human transcription factor TFIID.
Cold Spring Harbor symposia on quantitative biology 1998;63():233-41.
1997: Arnaud Poterszman; Valérie Lamour; Jean-Marc Egly; Dino Moras; Jean-Claude Thierry; Olivier Poch
A eukaryotic XPB/ERCC3-like helicase in Mycobacterium leprae?
Trends in biochemical sciences 1997;22(11):418-9.
1997: Olivier Poch; Barbara Winsor
Who's who among the Saccharomyces cerevisiae actin-related proteins? A classification and nomenclature proposal for a large family.
Yeast (Chichester, England) 1997;13(11):1053-8.
1997: R Bordonné; A Camasses; A Madania; Olivier Poch; I Tarassov; Barbara Winsor; R Martin
Analysis of a 35.6 kb region on the right arm of Saccharomyces cerevisiae chromosome XV.
Yeast (Chichester, England) 1997;13(1):73-83.
1996: A Madania; Olivier Poch; I Tarassov; Barbara Winsor; R Martin
Analysis of a 22,956 bp region on the right arm of Saccharomyces cerevisiae chromosome XV.
Yeast (Chichester, England) 1996;12(15):1563-73.
1996: Olivier Poch; M Delarue
Converting sequence block alignments into structural insights.
Methods in enzymology 1996;266():662-80.
1994: Gilbert de Murcia; Valérie Schreiber; M Molinete; B Saulier; Olivier Poch; M Masson; Claude Niedergang; Josiane Ménissier-de Murcia
Structure and function of poly(ADP-ribose) polymerase.
Molecular and cellular biochemistry 1994;138(1-2):15-24.
1994: Olivier Poch; E Schwob; F de Fraipont; A Camasses; R Bordonné; R P Martin
RPK1, an essential yeast protein kinase involved in the regulation of the onset of mitosis, shows homology to mammalian dual-specificity kinases.
Molecular & general genetics : MGG 1994;243(6):641-53.
1994: R Müller; Olivier Poch; M Delarue; D H Bishop; Michèle Bouloy
Rift Valley fever virus L segment: correction of the sequence and possible functional role of newly identified regions conserved in RNA-dependent polymerases.
The Journal of general virology 1994;75 ( Pt 6)():1345-52.
1993: Frédéric Simonin; Olivier Poch; M Delarue; Gilbert de Murcia
Identification of potential active-site residues in the human poly(ADP-ribose) polymerase.
The Journal of biological chemistry 1993;268(12):8529-35.
1992: Olivier Poch; H L'Hôte; V Dallery; F Debeaux; R Fleer; R Sodoyer
Sequence of the Kluyveromyces lactis beta-galactosidase: comparison with prokaryotic enzymes and secondary structure analysis.
Gene 1992;118(1):55-63.
1990: Frédéric Simonin; Josiane Ménissier-de Murcia; Olivier Poch; S Muller; Gérard Gradwohl; M Molinete; C Penning; G Keith; Gilbert de Murcia
Expression and site-directed mutagenesis of the catalytic domain of human poly(ADP-ribose)polymerase in Escherichia coli. Lysine 893 is critical for activity.
The Journal of biological chemistry 1990;265(31):19249-56.
1990: Gilbert Eriani; M Delarue; Olivier Poch; J Gangloff; Dino Moras
Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequence motifs.
Nature 1990;347(6289):203-6.
1990: M Delarue; Olivier Poch; Noël Tordo; Dino Moras; P Argos
An attempt to unify the structure of polymerases.
Protein engineering 1990;3(6):461-7.
1990: Olivier Poch; B M Blumberg; Lydie Bougueleret; Noël Tordo
Sequence comparison of five polymerases (L proteins) of unsegmented negative-strand RNA viruses: theoretical assignment of functional domains.
The Journal of general virology 1990;71 ( Pt 5)():1153-62.
1989: Olivier Poch; I Sauvaget; M Delarue; Noël Tordo
Identification of four conserved motifs among the RNA-dependent polymerase encoding elements.
The EMBO journal 1989;8(12):3867-74.
1988: Noël Tordo; Olivier Poch; A Ermine; G Keith; François Rougeon
Completion of the rabies virus genome sequence determination: highly conserved domains among the L (polymerase) proteins of unsegmented negative-strand RNA viruses.
Virology 1988;165(2):565-76.
1988: Olivier Poch; Noël Tordo; G Keith
Sequence of the 3386 3' nucleotides of the genome of the AVO1 strain rabies virus: structural similarities in the protein regions involved in transcription.
Biochimie 1988;70(8):1019-29.
1987: Olivier Poch; Noël Tordo; A Ermine; G Keith; François Rougeon
[100 years later...the rabies virus].
Bulletin de l'Académie nationale de médecine 1987;171(8):1087-94.
1986: Noël Tordo; Olivier Poch; A Ermine; G Keith; François Rougeon
Walking along the rabies genome: is the large G-L intergenic region a remnant gene?
Proceedings of the National Academy of Sciences of the United States of America 1986;83(11):3914-8.
1986: Noël Tordo; Olivier Poch; A Ermine; G Keith
Primary structure of leader RNA and nucleoprotein genes of the rabies genome: segmented homology with VSV.
Nucleic acids research 1986;14(6):2671-83.