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Jack Pronk
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63
van Dijken, Johannes
26
Daran-Lapujade, Pascale
26
Luttik, Marijke
23
van Maris, Antonius
22
Daran, Jean-Marc
21
De Winde, Johannes
12
Kötter, Peter
11
Steensma, Yde
10
Winkler, Ron
8
Tai, Siew Leng
8
Kuyper, Marko
8
de Jong-Gubbels, P
7
Bakker, Barbara
7
Piper, Matthew
7
Walsh, Michael
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All Publications
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2009: Abbott Derek A; Zelle Rintze M; Pronk Jack T; van Maris Antonius J A
Metabolic engineering of Saccharomyces cerevisiae for production of carboxylic acids: current status and challenges.
FEMS yeast research 2009;9(8):1123-36.
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2009: Hazelwood Lucie A; Walsh Michael C; Luttik Marijke A H; Daran-Lapujade Pascale; Pronk Jack T; Daran Jean-Marc
Identity of the growth-limiting nutrient strongly affects storage carbohydrate accumulation in anaerobic chemostat cultures of Saccharomyces cerevisiae.
Applied and environmental microbiology 2009;75(21):6876-85.
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2009: Boender Léonie G M; de Hulster Erik A F; van Maris Antonius J A; Daran-Lapujade Pascale A S; Pronk Jack T
Quantitative physiology of Saccharomyces cerevisiae at near-zero specific growth rates.
Applied and environmental microbiology 2009;75(17):5607-14.
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2009: Daran-Lapujade Pascale; Daran Jean-Marc; Luttik Marijke A H; Almering Marinka J H; Pronk Jack T; Kötter Peter
An atypical PMR2 locus is responsible for hypersensitivity to sodium and lithium cations in the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D.
FEMS yeast research 2009;9(5):789-92.
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2009: Bellissimi Eleonora; van Dijken Johannes P; Pronk Jack T; van Maris Antonius J A
Effects of acetic acid on the kinetics of xylose fermentation by an engineered, xylose-isomerase-based Saccharomyces cerevisiae strain.
FEMS yeast research 2009;9(3):358-64.
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2009: Abbott Derek A; van den Brink Joost; Minneboo Inge M K; Pronk Jack T; van Maris Antonius J A
Anaerobic homolactate fermentation with Saccharomyces cerevisiae results in depletion of ATP and impaired metabolic activity.
FEMS yeast research 2009;9(3):349-57.
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2009: Snoek I S I; van der Krogt Z A; Touw H; Kerkman R; Pronk J T; Bovenberg R A L; van den Berg M A; Daran J M
Construction of an hdfA Penicillium chrysogenum strain impaired in non-homologous end-joining and analysis of its potential for functional analysis studies.
Fungal genetics and biology : FG & B 2009;46(5):418-26.
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2009: van den Brink J; Akeroyd M; van der Hoeven R; Pronk J T; de Winde J H; Daran-Lapujade P
Energetic limits to metabolic flexibility: responses of Saccharomyces cerevisiae to glucose-galactose transitions.
Microbiology (Reading, England) 2009;155(Pt 4):1340-50.
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2009: Abbott Derek A; Suir Erwin; Duong Giang-Huong; de Hulster Erik; Pronk Jack T; van Maris Antonius J A
Catalase overexpression reduces lactic acid-induced oxidative stress in Saccharomyces cerevisiae.
Applied and environmental microbiology 2009;75(8):2320-5.
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2009: Harris Diana M; Westerlaken Ilja; Schipper Dick; van der Krogt Zita A; Gombert Andreas K; Sutherland John; Raamsdonk Leonie M; van den Berg Marco A; Bovenberg Roel A L; Pronk Jack T; Daran Jean-Marc
Engineering of Penicillium chrysogenum for fermentative production of a novel carbamoylated cephem antibiotic precursor.
Metabolic engineering 2009;11(2):125-37.
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2009: Wisselink H Wouter; Toirkens Maurice J; Wu Qixiang; Pronk Jack T; van Maris Antonius J A
Novel evolutionary engineering approach for accelerated utilization of glucose, xylose, and arabinose mixtures by engineered Saccharomyces cerevisiae strains.
Applied and environmental microbiology 2009;75(4):907-14.
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2009: Harris Diana M; van der Krogt Zita A; Klaassen Paul; Raamsdonk Leonie M; Hage Susanne; van den Berg Marco A; Bovenberg Roel A L; Pronk Jack T; Daran Jean-Marc
Exploring and dissecting genome-wide gene expression responses of Penicillium chrysogenum to phenylacetic acid consumption and penicillinG production.
BMC genomics 2009;10():75.
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2009: Knijnenburg Theo A; Daran Jean-Marc G; van den Broek Marcel A; Daran-Lapujade Pascale As; de Winde Johannes H; Pronk Jack T; Reinders Marcel J T; Wessels Lodewyk F A
Combinatorial effects of environmental parameters on transcriptional regulation in Saccharomyces cerevisiae: a quantitative analysis of a compendium of chemostat-based transcriptome data.
BMC genomics 2009;10():53.
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2009: Daran-Lapujade Pascale; Daran Jean-Marc; van Maris Antonius J A; de Winde Johannes H; Pronk Jack T
Chemostat-based micro-array analysis in baker's yeast.
Advances in microbial physiology 2009;54():257-311.
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2008: van den Berg Marco A; Albang Richard; Albermann Kaj; Badger Jonathan H; Daran Jean-Marc; Driessen Arnold J M; Garcia-Estrada Carlos; Fedorova Natalie D; Harris Diana M; Heijne Wilbert H M; Joardar Vinita; Kiel Jan A K W; Kovalchuk Andriy; Martín Juan F; Nierman William C; Nijland Jeroen G; Pronk Jack T; Roubos Johannes A; van der Klei Ida J; van Peij Noël N M E; Veenhuis Marten; von Döhren Hans; Wagner Christian; Wortman Jennifer; Bovenberg Roel A L
Genome sequencing and analysis of the filamentous fungus Penicillium chrysogenum.
Nature biotechnology 2008;26(10):1161-8.
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2008: Abbott Derek A; Suir Erwin; van Maris Antonius J A; Pronk Jack T
Physiological and transcriptional responses to high concentrations of lactic acid in anaerobic chemostat cultures of Saccharomyces cerevisiae.
Applied and environmental microbiology 2008;74(18):5759-68.
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2008: van den Brink Joost; Canelas André B; van Gulik Walter M; Pronk Jack T; Heijnen Joseph J; de Winde Johannes H; Daran-Lapujade Pascale
Dynamics of glycolytic regulation during adaptation of Saccharomyces cerevisiae to fermentative metabolism.
Applied and environmental microbiology 2008;74(18):5710-23.
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2008: Cipollina Chiara; van den Brink Joost; Daran-Lapujade Pascale; Pronk Jack T; Porro Danilo; de Winde Johannes H
Saccharomyces cerevisiae SFP1: at the crossroads of central metabolism and ribosome biogenesis.
Microbiology (Reading, England) 2008;154(Pt 6):1686-99.
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2008: Baerends Richard J S; de Hulster Erik; Geertman Jan-Maarten A; Daran Jean-Marc; van Maris Antonius J A; Veenhuis Marten; van der Klei Ida J; Pronk Jack T
Engineering and analysis of a Saccharomyces cerevisiae strain that uses formaldehyde as an auxiliary substrate.
Applied and environmental microbiology 2008;74(10):3182-8.
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2008: Luttik M A H; Vuralhan Z; Suir E; Braus G H; Pronk J T; Daran J M
Alleviation of feedback inhibition in Saccharomyces cerevisiae aromatic amino acid biosynthesis: quantification of metabolic impact.
Metabolic engineering 2008;10(3-4):141-53.
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2008: Zelle Rintze M; de Hulster Erik; van Winden Wouter A; de Waard Pieter; Dijkema Cor; Winkler Aaron A; Geertman Jan-Maarten A; van Dijken Johannes P; Pronk Jack T; van Maris Antonius J A
Malic acid production by Saccharomyces cerevisiae: engineering of pyruvate carboxylation, oxaloacetate reduction, and malate export.
Applied and environmental microbiology 2008;74(9):2766-77.
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2008: Hazelwood Lucie A; Daran Jean-Marc; van Maris Antonius J A; Pronk Jack T; Dickinson J Richard
The Ehrlich pathway for fusel alcohol production: a century of research on Saccharomyces cerevisiae metabolism.
Applied and environmental microbiology 2008;74(8):2259-66.
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2008: Cipollina Chiara; van den Brink Joost; Daran-Lapujade Pascale; Pronk Jack T; Vai Marina; de Winde Johannes H
Revisiting the role of yeast Sfp1 in ribosome biogenesis and cell size control: a chemostat study.
Microbiology (Reading, England) 2008;154(Pt 1):337-46.
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2008: Fazio Alessandro; Jewett Michael C; Daran-Lapujade Pascale; Mustacchi Roberta; Usaite Renata; Pronk Jack T; Workman Christopher T; Nielsen Jens
Transcription factor control of growth rate dependent genes in Saccharomyces cerevisiae: a three factor design.
BMC genomics 2008;9():341.
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2008: van den Brink Joost; Daran-Lapujade Pascale; Pronk Jack T; de Winde Johannes H
New insights into the Saccharomyces cerevisiae fermentation switch: dynamic transcriptional response to anaerobicity and glucose-excess.
BMC genomics 2008;9():100.
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2007: De Nicola Raffaele; Hazelwood Lucie A; De Hulster Erik A F; Walsh Michael C; Knijnenburg Theo A; Reinders Marcel J T; Walker Graeme M; Pronk Jack T; Daran Jean-Marc; Daran-Lapujade Pascale
Physiological and transcriptional responses of Saccharomyces cerevisiae to zinc limitation in chemostat cultures.
Applied and environmental microbiology 2007;73(23):7680-92.
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2007: Tai Siew Leng; Daran-Lapujade Pascale; Walsh Michael C; Pronk Jack T; Daran Jean-Marc
Acclimation of Saccharomyces cerevisiae to low temperature: a chemostat-based transcriptome analysis.
Molecular biology of the cell 2007;18(12):5100-12.
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2007: de Groot Marco J L; Daran-Lapujade Pascale; van Breukelen Bas; Knijnenburg Theo A; de Hulster Erik A F; Reinders Marcel J T; Pronk Jack T; Heck Albert J R; Slijper Monique
Quantitative proteomics and transcriptomics of anaerobic and aerobic yeast cultures reveals post-transcriptional regulation of key cellular processes.
Microbiology (Reading, England) 2007;153(Pt 11):3864-78.
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2007: Daran-Lapujade Pascale; Rossell Sergio; van Gulik Walter M; Luttik Marijke A H; de Groot Marco J L; Slijper Monique; Heck Albert J R; Daran Jean-Marc; de Winde Johannes H; Westerhoff Hans V; Pronk Jack T; Bakker Barbara M
The fluxes through glycolytic enzymes in Saccharomyces cerevisiae are predominantly regulated at posttranscriptional levels.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(40):15753-8.
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2007: Abbott Derek A; Knijnenburg Theo A; de Poorter Linda M I; Reinders Marcel J T; Pronk Jack T; van Maris Antonius J A
Generic and specific transcriptional responses to different weak organic acids in anaerobic chemostat cultures of Saccharomyces cerevisiae.
FEMS yeast research 2007;7(6):819-33.
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2007: Harris Diana M; van der Krogt Zita A; van Gulik Walter M; van Dijken Johannes P; Pronk Jack T
Formate as an auxiliary substrate for glucose-limited cultivation of Penicillium chrysogenum: impact on penicillin G production and biomass yield.
Applied and environmental microbiology 2007;73(15):5020-5.
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2007: Wisselink H Wouter; Toirkens Maurice J; del Rosario Franco Berriel M; Winkler Aaron A; van Dijken Johannes P; Pronk Jack T; van Maris Antonius J A
Engineering of Saccharomyces cerevisiae for efficient anaerobic alcoholic fermentation of L-arabinose.
Applied and environmental microbiology 2007;73(15):4881-91.
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2007: Boer Viktor M; Tai Siew Leng; Vuralhan Zeynep; Arifin Yalun; Walsh Michael C; Piper Matthew D W; de Winde Johannes H; Pronk Jack T; Daran Jean-Marc
Transcriptional responses of Saccharomyces cerevisiae to preferred and nonpreferred nitrogen sources in glucose-limited chemostat cultures.
FEMS yeast research 2007;7(4):604-20.
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2007: Tai Siew Leng; Daran-Lapujade Pascale; Luttik Marijke A H; Walsh Michael C; Diderich Jasper A; Krijger Gerard C; van Gulik Walter M; Pronk Jack T; Daran Jean-Marc
Control of the glycolytic flux in Saccharomyces cerevisiae grown at low temperature: a multi-level analysis in anaerobic chemostat cultures.
The Journal of biological chemistry 2007;282(14):10243-51.
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2007: Tai Siew Leng; Snoek Ishtar; Luttik Marijke A H; Almering Marinka J H; Walsh Michael C; Pronk Jack T; Daran Jean-Marc
Correlation between transcript profiles and fitness of deletion mutants in anaerobic chemostat cultures of Saccharomyces cerevisiae.
Microbiology (Reading, England) 2007;153(Pt 3):877-86.
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2007: Kleijn Roelco J; Geertman Jan-Maarten A; Nfor Beckley K; Ras Cor; Schipper Dick; Pronk Jack T; Heijnen Joseph J; van Maris Antonius J A; van Winden Wouter A
Metabolic flux analysis of a glycerol-overproducing Saccharomyces cerevisiae strain based on GC-MS, LC-MS and NMR-derived C-labelling data.
FEMS yeast research 2007;7(2):216-31.
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2007: van Maris Antonius J A; Winkler Aaron A; Kuyper Marko; de Laat Wim T A M; van Dijken Johannes P; Pronk Jack T
Development of efficient xylose fermentation in Saccharomyces cerevisiae: xylose isomerase as a key component.
Advances in biochemical engineering/biotechnology 2007;108():179-204.
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2007: Knijnenburg Theo A; de Winde Johannes H; Daran Jean-Marc; Daran-Lapujade Pascale; Pronk Jack T; Reinders Marcel J T; Wessels Lodewyk F A
Exploiting combinatorial cultivation conditions to infer transcriptional regulation.
BMC genomics 2007;8():25.
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2006: Geertman Jan-Maarten A; van Dijken Johannes P; Pronk Jack T
Engineering NADH metabolism in Saccharomyces cerevisiae: formate as an electron donor for glycerol production by anaerobic, glucose-limited chemostat cultures.
FEMS yeast research 2006;6(8):1193-203.
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2006: van Maris Antonius J A; Abbott Derek A; Bellissimi Eleonora; van den Brink Joost; Kuyper Marko; Luttik Marijke A H; Wisselink H Wouter; Scheffers W Alexander; van Dijken Johannes P; Pronk Jack T
Alcoholic fermentation of carbon sources in biomass hydrolysates by Saccharomyces cerevisiae: current status.
Antonie van Leeuwenhoek 2006;90(4):391-418.
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2006: Geertman Jan-Maarten A; van Maris Antonius J A; van Dijken Johannes P; Pronk Jack T
Physiological and genetic engineering of cytosolic redox metabolism in Saccharomyces cerevisiae for improved glycerol production.
Metabolic engineering 2006;8(6):532-42.
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2006: Hazelwood Lucie A; Tai Siew Leng; Boer Viktor M; de Winde Johannes H; Pronk Jack T; Daran Jean Marc
A new physiological role for Pdr12p in Saccharomyces cerevisiae: export of aromatic and branched-chain organic acids produced in amino acid catabolism.
FEMS yeast research 2006;6(6):937-45.
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2006: Jansen Mickel L A; Krook Dennis J J; De Graaf Koen; van Dijken Johannes P; Pronk Jack T; de Winde Johannes H
Physiological characterization and fed-batch production of an extracellular maltase of Schizosaccharomyces pombe CBS 356.
FEMS yeast research 2006;6(6):888-901.
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2006: Harris Diana M; Diderich Jasper A; van der Krogt Zita A; Luttik Marijke A H; Raamsdonk Léonie M; Bovenberg Roel A L; van Gulik Walter M; van Dijken Johannes P; Pronk Jack T
Enzymic analysis of NADPH metabolism in beta-lactam-producing Penicillium chrysogenum: presence of a mitochondrial NADPH dehydrogenase.
Metabolic engineering 2006;8(2):91-101.
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2006: Kresnowati M T A P; van Winden W A; Almering M J H; ten Pierick A; Ras C; Knijnenburg T A; Daran-Lapujade P; Pronk J T; Heijnen J J; Daran J M
When transcriptome meets metabolome: fast cellular responses of yeast to sudden relief of glucose limitation.
Molecular systems biology 2006;2():49.
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2006: Kolkman Annemieke; Daran-Lapujade Pascale; Fullaondo Asier; Olsthoorn Maurien M A; Pronk Jack T; Slijper Monique; Heck Albert J R
Proteome analysis of yeast response to various nutrient limitations.
Molecular systems biology 2006;2():2006.0026.
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2005: Aguilera Jaime; Van Dijken Johannes P; De Winde Johannes H; Pronk Jack T
Carbonic anhydrase (Nce103p): an essential biosynthetic enzyme for growth of Saccharomyces cerevisiae at atmospheric carbon dioxide pressure.
The Biochemical journal 2005;391(Pt 2):311-6.
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2005: Kuyper Marko; Toirkens Maurice J; Diderich Jasper A; Winkler Aaron A; van Dijken Johannes P; Pronk Jack T
Evolutionary engineering of mixed-sugar utilization by a xylose-fermenting Saccharomyces cerevisiae strain.
FEMS yeast research 2005;5(10):925-34.
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2005: Boer Viktor M; Daran Jean-Marc; Almering Marinka J H; de Winde Johannes H; Pronk Jack T
Contribution of the Saccharomyces cerevisiae transcriptional regulator Leu3p to physiology and gene expression in nitrogen- and carbon-limited chemostat cultures.
FEMS yeast research 2005;5(10):885-97.
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2005: Vuralhan Zeynep; Luttik Marijke A H; Tai Siew Leng; Boer Viktor M; Morais Marcos A; Schipper Dick; Almering Marinka J H; Kötter Peter; Dickinson J Richard; Daran Jean-Marc; Pronk Jack T
Physiological characterization of the ARO10-dependent, broad-substrate-specificity 2-oxo acid decarboxylase activity of Saccharomyces cerevisiae.
Applied and environmental microbiology 2005;71(6):3276-84.
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2005: Jansen Mickel L A; Diderich Jasper A; Mashego Mlawule; Hassane Adham; de Winde Johannes H; Daran-Lapujade Pascale; Pronk Jack T
Prolonged selection in aerobic, glucose-limited chemostat cultures of Saccharomyces cerevisiae causes a partial loss of glycolytic capacity.
Microbiology (Reading, England) 2005;151(Pt 5):1657-69.
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2005: Aguilera Jaime; Petit Thomas; de Winde Johannes H; Pronk Jack T
Physiological and genome-wide transcriptional responses of Saccharomyces cerevisiae to high carbon dioxide concentrations.
FEMS yeast research 2005;5(6-7):579-93.
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2005: Kuyper Marko; Hartog Miranda M P; Toirkens Maurice J; Almering Marinka J H; Winkler Aaron A; van Dijken Johannes P; Pronk Jack T
Metabolic engineering of a xylose-isomerase-expressing Saccharomyces cerevisiae strain for rapid anaerobic xylose fermentation.
FEMS yeast research 2005;5(4-5):399-409.
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2005: Tai Siew Leng; Boer Viktor M; Daran-Lapujade Pascale; Walsh Michael C; de Winde Johannes H; Daran Jean-Marc; Pronk Jack T
Two-dimensional transcriptome analysis in chemostat cultures. Combinatorial effects of oxygen availability and macronutrient limitation in Saccharomyces cerevisiae.
The Journal of biological chemistry 2005;280(1):437-47.
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2004: van Maris Antonius J A; Konings Wil N; van Dijken Johannes P; Pronk Jack T
Microbial export of lactic and 3-hydroxypropanoic acid: implications for industrial fermentation processes.
Metabolic engineering 2004;6(4):245-55.
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2004: Dietrich Heidelinde R C; Knoll Johann; van den Doel Lennert R; van Dedem Gijs W K; Daran-Lapujade Pascale A S; van Vliet Lucas J; Moerman Rob; Pronk Jack T; Young Ian T
Nanoarrays: a method for performing enzymatic assays.
Analytical chemistry 2004;76(14):4112-7.
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2004: van Maris Antonius J A; Winkler Aaron A; Porro Danilo; van Dijken Johannes P; Pronk Jack T
Homofermentative lactate production cannot sustain anaerobic growth of engineered Saccharomyces cerevisiae: possible consequence of energy-dependent lactate export.
Applied and environmental microbiology 2004;70(5):2898-905.
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2004: Jansen Mickel L A; Daran-Lapujade Pascale; de Winde Johannes H; Piper Matthew D W; Pronk Jack T
Prolonged maltose-limited cultivation of Saccharomyces cerevisiae selects for cells with improved maltose affinity and hypersensitivity.
Applied and environmental microbiology 2004;70(4):1956-63.
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2004: Kuyper Marko; Winkler Aaron A; van Dijken Johannes P; Pronk Jack T
Minimal metabolic engineering of Saccharomyces cerevisiae for efficient anaerobic xylose fermentation: a proof of principle.
FEMS yeast research 2004;4(6):655-64.
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2004: Daran-Lapujade Pascale; Jansen Mickel L A; Daran Jean-Marc; van Gulik Walter; de Winde Johannes H; Pronk Jack T
Role of transcriptional regulation in controlling fluxes in central carbon metabolism of Saccharomyces cerevisiae. A chemostat culture study.
The Journal of biological chemistry 2004;279(10):9125-38.
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2004: van Maris Antonius J A; Geertman Jan-Maarten A; Vermeulen Alexander; Groothuizen Matthijs K; Winkler Aaron A; Piper Matthew D W; van Dijken Johannes P; Pronk Jack T
Directed evolution of pyruvate decarboxylase-negative Saccharomyces cerevisiae, yielding a C2-independent, glucose-tolerant, and pyruvate-hyperproducing yeast.
Applied and environmental microbiology 2004;70(1):159-66.
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2003: Daran-Lapujade Pascale; Daran Jean Marc; Kötter Peter; Petit Thomas; Piper Matthew D W; Pronk Jack T
Comparative genotyping of the Saccharomyces cerevisiae laboratory strains S288C and CEN.PK113-7D using oligonucleotide microarrays.
FEMS yeast research 2003;4(3):259-69.
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2003: Kuyper Marko; Harhangi Harry R; Stave Ann Kristin; Winkler Aaron A; Jetten Mike S M; de Laat Wim T A M; den Ridder Jan J J; Op den Camp Huub J M; van Dijken Johannes P; Pronk Jack T
High-level functional expression of a fungal xylose isomerase: the key to efficient ethanolic fermentation of xylose by Saccharomyces cerevisiae?
FEMS yeast research 2003;4(1):69-78.
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2003: Vuralhan Zeynep; Morais Marcos A; Tai Siew-Leng; Piper Matthew D W; Pronk Jack T
Identification and characterization of phenylpyruvate decarboxylase genes in Saccharomyces cerevisiae.
Applied and environmental microbiology 2003;69(8):4534-41.
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2003: Harhangi Harry R; Akhmanova Anna S; Emmens Roul; van der Drift Chris; de Laat Wim T A M; van Dijken Johannes P; Jetten Mike S M; Pronk Jack T; Op den Camp Huub J M
Xylose metabolism in the anaerobic fungus Piromyces sp. strain E2 follows the bacterial pathway.
Archives of microbiology 2003;180(2):134-41.
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2003: van Maris Antonius J A; Luttik Marijke A H; Winkler Aaron A; van Dijken Johannes P; Pronk Jack T
Overproduction of threonine aldolase circumvents the biosynthetic role of pyruvate decarboxylase in glucose-limited chemostat cultures of Saccharomyces cerevisiae.
Applied and environmental microbiology 2003;69(4):2094-9.
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2003: de Swaaf M E; Pronk J T; Sijtsma L
Fed-batch cultivation of the docosahexaenoic-acid-producing marine alga Crypthecodinium cohnii on ethanol.
Applied microbiology and biotechnology 2003;61(1):40-3.
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2003: De Swaaf Martin E; Sijtsma Lolke; Pronk Jack T
High-cell-density fed-batch cultivation of the docosahexaenoic acid producing marine alga Crypthecodinium cohnii.
Biotechnology and bioengineering 2003;81(6):666-72.
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2003: Boer Viktor M; de Winde Johannes H; Pronk Jack T; Piper Matthew D W
The genome-wide transcriptional responses of Saccharomyces cerevisiae grown on glucose in aerobic chemostat cultures limited for carbon, nitrogen, phosphorus, or sulfur.
The Journal of biological chemistry 2003;278(5):3265-74.
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2002: Piper Matthew D W; Daran-Lapujade Pascale; Bro Christoffer; Regenberg Birgitte; Knudsen Steen; Nielsen Jens; Pronk Jack T
Reproducibility of oligonucleotide microarray transcriptome analyses. An interlaboratory comparison using chemostat cultures of Saccharomyces cerevisiae.
The Journal of biological chemistry 2002;277(40):37001-8.
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2002: Jansen Mickel L A; De Winde Johannes H; Pronk Jack T
Hxt-carrier-mediated glucose efflux upon exposure of Saccharomyces cerevisiae to excess maltose.
Applied and environmental microbiology 2002;68(9):4259-65.
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2002: Overkamp Karin M; Bakker Barbara M; Steensma H Y; van Dijken Johannes P; Pronk Jack T
Two mechanisms for oxidation of cytosolic NADPH by Kluyveromyces lactis mitochondria.
Yeast (Chichester, England) 2002;19(10):813-24.
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2002: Overkamp Karin M; Bakker Barbara M; Kötter Peter; Luttik Marijke A H; Van Dijken Johannes P; Pronk Jack T
Metabolic engineering of glycerol production in Saccharomyces cerevisiae.
Applied and environmental microbiology 2002;68(6):2814-21.
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2002: Pronk Jack T
Auxotrophic yeast strains in fundamental and applied research.
Applied and environmental microbiology 2002;68(5):2095-100.
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2002: Overkamp Karin M; Kötter Peter; van der Hoek Richard; Schoondermark-Stolk Sung; Luttik Marijke A H; van Dijken Johannes P; Pronk Jack T
Functional analysis of structural genes for NAD(+)-dependent formate dehydrogenase in Saccharomyces cerevisiae.
Yeast (Chichester, England) 2002;19(6):509-20.
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2002: van Dijken Johannes P; van Tuijl Arjen; Luttik Marijke A H; Middelhoven Wouter J; Pronk Jack T
Novel pathway for alcoholic fermentation of delta-gluconolactone in the yeast Saccharomyces bulderi.
Journal of bacteriology 2002;184(3):672-8.
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2001: Chin-Joe I; Straathof A J; Pronk J T; Jongejan J A; Heijnen J J
Influence of the ethanol and glucose supply rate on the rate and enantioselectivity of 3-oxo ester reduction by baker's yeast.
Biotechnology and bioengineering 2001;75(1):29-38.
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2001: van Maris A J; Bakker B M; Brandt M; Boorsma A; Teixeira de Mattos M J; Grivell L A; Pronk J T; Blom J
Modulating the distribution of fluxes among respiration and fermentation by overexpression of HAP4 in Saccharomyces cerevisiae.
FEMS yeast research 2001;1(2):139-49.
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2001: Bakker B M; Overkamp K M; van Maris AJ; Kötter P; Luttik M A; van Dijken JP; Pronk J T
Stoichiometry and compartmentation of NADH metabolism in Saccharomyces cerevisiae.
FEMS microbiology reviews 2001;25(1):15-37.
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2000: Luttik M A; Kötter P; Salomons F A; van der Klei I J; van Dijken J P; Pronk J T
The Saccharomyces cerevisiae ICL2 gene encodes a mitochondrial 2-methylisocitrate lyase involved in propionyl-coenzyme A metabolism.
Journal of bacteriology 2000;182(24):7007-13.
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2000: Bakker B M; Bro C; Kötter P; Luttik M A; van Dijken J P; Pronk J T
The mitochondrial alcohol dehydrogenase Adh3p is involved in a redox shuttle in Saccharomyces cerevisiae.
Journal of bacteriology 2000;182(17):4730-7.
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2000: Chin-Joe I; Nelisse P M; Straathof A J; Jongejan J A; Pronk J T; Heijnen J J
Hydrolytic activity in baker's yeast limits the yield of asymmetric 3-oxo ester reduction.
Biotechnology and bioengineering 2000;69(4):370-6.
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2000: van Hoek P; de Hulster E; van Dijken J P; Pronk J T
Fermentative capacity in high-cell-density fed-batch cultures of baker's yeast.
Biotechnology and bioengineering 2000;68(5):517-23.
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2000: Zeeman A M; Kuyper M; Pronk J T; van Dijken J P; Steensma H Y
Regulation of pyruvate metabolism in chemostat cultures of Kluyveromyces lactis CBS 2359.
Yeast (Chichester, England) 2000;16(7):611-20.
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2000: Overkamp K M; Bakker B M; Kötter P; van Tuijl A; de Vries S; van Dijken J P; Pronk J T
In vivo analysis of the mechanisms for oxidation of cytosolic NADH by Saccharomyces cerevisiae mitochondria.
Journal of bacteriology 2000;182(10):2823-30.
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1999: ter Linde J J; Liang H; Davis R W; Steensma H Y; van Dijken J P; Pronk J T
Genome-wide transcriptional analysis of aerobic and anaerobic chemostat cultures of Saccharomyces cerevisiae.
Journal of bacteriology 1999;181(24):7409-13.
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1999: Bauer J; Luttik M A; Flores C L; van Dijken J P; Pronk J T; Niederberger P
By-product formation during exposure of respiring Saccharomyces cerevisiae cultures to excess glucose is not caused by a limited capacity of pyruvate carboxylase.
FEMS microbiology letters 1999;179(1):107-13.
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1999: Zeeman A M; Luttik M A; Pronk J T; van Dijken J P; de Steensma H
Impaired growth on glucose of a pyruvate dehydrogenase-negative mutant of Kluyveromyces lactis is due to a limitation in mitochondrial acetyl-coenzyme A uptake.
FEMS microbiology letters 1999;177(1):23-8.
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1999: Diderich J A; Schepper M; van Hoek P; Luttik M A; van Dijken J P; Pronk J T; Klaassen P; Boelens H F; de Mattos M J; van Dam K; Kruckeberg A L
Glucose uptake kinetics and transcription of HXT genes in chemostat cultures of Saccharomyces cerevisiae.
The Journal of biological chemistry 1999;274(22):15350-9.
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1999: Flikweert M T; de Swaaf M; van Dijken J P; Pronk J T
Growth requirements of pyruvate-decarboxylase-negative Saccharomyces cerevisiae.
FEMS microbiology letters 1999;174(1):73-9.
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1999: van der Heijden A M; van Hoek P; Kaliterna J; van Dijken J P; van Rantwijk F; Pronk J T
Use of the yeast Hansenula polymorpha (Pichia angusta) to remove contaminating sugars from ethyl beta-D-fructofuranoside produced during sucrose ethanolysis catalysed by invertase.
Journal of bioscience and bioengineering 1999;87(1):82-6.
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1999: Flikweert M T; Kuyper M; van Maris A J; Kötter P; van Dijken J P; Pronk J T
Steady-state and transient-state analysis of growth and metabolite production in a Saccharomyces cerevisiae strain with reduced pyruvate-decarboxylase activity.
Biotechnology and bioengineering 1999;66(1):42-50.
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1998: Zeeman A M; Luttik M A; Thiele C; van Dijken J P; Pronk J T; Steensma H Y
Inactivation of the Kluyveromyces lactis KlPDA1 gene leads to loss of pyruvate dehydrogenase activity, impairs growth on glucose and triggers aerobic alcoholic fermentation.
Microbiology (Reading, England) 1998;144 ( Pt 12)():3437-46.
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1998: de Jong-Gubbels P; Bauer J; Niederberger P; Stückrath I; Kötter P; van Dijken J P; Pronk J T
Physiological characterisation of a pyruvate-carboxylase-negative Saccharomyces cerevisiae mutant in batch and chemostat cultures.
Antonie van Leeuwenhoek 1998;74(4):253-63.
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1998: Van Hoek P; Van Dijken J P; Pronk J T
Effect of specific growth rate on fermentative capacity of baker's yeast.
Applied and environmental microbiology 1998;64(11):4226-33.
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1998: Luttik M A; Overkamp K M; Kötter P; de Vries S; van Dijken J P; Pronk J T
The Saccharomyces cerevisiae NDE1 and NDE2 genes encode separate mitochondrial NADH dehydrogenases catalyzing the oxidation of cytosolic NADH.
The Journal of biological chemistry 1998;273(38):24529-34.
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1998: de Jong-Gubbels P; van den Berg M A; Luttik M A; Steensma H Y; van Dijken J P; Pronk J T
Overproduction of acetyl-coenzyme A synthetase isoenzymes in respiring Saccharomyces cerevisiae cells does not reduce acetate production after exposure to glucose excess.
FEMS microbiology letters 1998;165(1):15-20.
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1998: Boles E; de Jong-Gubbels P; Pronk J T
Identification and characterization of MAE1, the Saccharomyces cerevisiae structural gene encoding mitochondrial malic enzyme.
Journal of bacteriology 1998;180(11):2875-82.
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1998: van Hoek P; Flikweert M T; van der Aart Q J; Steensma H Y; van Dijken J P; Pronk J T
Effects of pyruvate decarboxylase overproduction on flux distribution at the pyruvate branch point in Saccharomyces cerevisiae.
Applied and environmental microbiology 1998;64(6):2133-40.
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1998: ter Schure E G; Flikweert M T; van Dijken J P; Pronk J T; Verrips C T
Pyruvate decarboxylase catalyzes decarboxylation of branched-chain 2-oxo acids but is not essential for fusel alcohol production by Saccharomyces cerevisiae.
Applied and environmental microbiology 1998;64(4):1303-7.
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1998: Kiers J; Zeeman A M; Luttik M; Thiele C; Castrillo J I; Steensma H Y; van Dijken J P; Pronk J T
Regulation of alcoholic fermentation in batch and chemostat cultures of Kluyveromyces lactis CBS 2359.
Yeast (Chichester, England) 1998;14(5):459-69.
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1997: Flikweert M T; van Dijken J P; Pronk J T
Metabolic responses of pyruvate decarboxylase-negative Saccharomyces cerevisiae to glucose excess.
Applied and environmental microbiology 1997;63(9):3399-404.
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1997: de Jong-Gubbels P; van den Berg M A; Steensma H Y; van Dijken J P; Pronk J T
The Saccharomyces cerevisiae acetyl-coenzyme A synthetase encoded by the ACS1 gene, but not the ACS2-encoded enzyme, is subject to glucose catabolite inactivation.
FEMS microbiology letters 1997;153(1):75-81.
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1997: van den Broek P J; van Gompel A E; Luttik M A; Pronk J T; van Leeuwen C C
Mechanism of glucose and maltose transport in plasma-membrane vesicles from the yeast Candida utilis.
The Biochemical journal 1997;321 ( Pt 2)():487-95.
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1996: Pronk J T; Yde Steensma H; Van Dijken J P
Pyruvate metabolism in Saccharomyces cerevisiae.
Yeast (Chichester, England) 1996;12(16):1607-33.
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1996: van den Berg M A; de Jong-Gubbels P; Kortland C J; van Dijken J P; Pronk J T; Steensma H Y
The two acetyl-coenzyme A synthetases of Saccharomyces cerevisiae differ with respect to kinetic properties and transcriptional regulation.
The Journal of biological chemistry 1996;271(46):28953-9.
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1996: Vanrolleghem P A; de Jong-Gubbels P; van Gulik W M; Pronk J T; van Dijken J P; Heijnen S
Validation of a metabolic network for Saccharomyces cerevisiae using mixed substrate studies.
Biotechnology progress 1996;12(4):434-48.
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1996: de Jong-Gubbels P; van Dijken J P; Pronk J T
Metabolic fluxes in chemostat cultures of Schizosaccharomyces pombe grown on mixtures of glucose and ethanol.
Microbiology (Reading, England) 1996;142 ( Pt 6)():1399-407.
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1996: Castrillo J I; Kaliterna J; Weusthuis R A; van Dijken J P; Pronk J T
High-cell-density cultivation of yeasts on disaccharides in oxygen-limited batch cultures.
Biotechnology and bioengineering 1996;49(6):621-8.
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1996: Flikweert M T; Van Der Zanden L; Janssen W M; Steensma H Y; Van Dijken J P; Pronk J T
Pyruvate decarboxylase: an indispensable enzyme for growth of Saccharomyces cerevisiae on glucose.
Yeast (Chichester, England) 1996;12(3):247-57.
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1995: Kaliterna J; Weusthuis R A; Castrillo J I; van Dijken J P; Pronk J T
Coordination of sucrose uptake and respiration in the yeast Debaryomyces yamadae.
Microbiology (Reading, England) 1995;141 ( Pt 7)():1567-74.
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1995: Kaliterna J; Weusthuis R A; Castrillo J I; Van Dijken J P; Pronk J T
Transient responses of Candida utilis to oxygen limitation: regulation of the Kluyver effect for maltose.
Yeast (Chichester, England) 1995;11(4):317-25.
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1995: de Jong-Gubbels P; Vanrolleghem P; Heijnen S; van Dijken J P; Pronk J T
Regulation of carbon metabolism in chemostat cultures of Saccharomyces cerevisiae grown on mixtures of glucose and ethanol.
Yeast (Chichester, England) 1995;11(5):407-18.
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1995: Hensing M C; Rouwenhorst R J; Heijnen J J; van Dijken J P; Pronk J T
Physiological and technological aspects of large-scale heterologous-protein production with yeasts.
Antonie van Leeuwenhoek 1995;67(3):261-79.
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1995: Visser W; van Spronsen E A; Nanninga N; Pronk J T; Gijs Kuenen J; van Dijken J P
Effects of growth conditions on mitochondrial morphology in Saccharomyces cerevisiae.
Antonie van Leeuwenhoek 1995;67(3):243-53.
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1994: Weusthuis R A; Pronk J T; van den Broek P J; van Dijken J P
Chemostat cultivation as a tool for studies on sugar transport in yeasts.
Microbiological reviews 1994;58(4):616-30.
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1994: Weusthuis R A; Luttik M A; Scheffers W A; van Dijken J P; Pronk J T
Is the Kluyver effect in yeasts caused by product inhibition?
Microbiology (Reading, England) 1994;140 ( Pt 7)():1723-9.
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1994: Weusthuis R A; Visser W; Pronk J T; Scheffers W A; van Dijken J P
Effects of oxygen limitation on sugar metabolism in yeasts: a continuous-culture study of the Kluyver effect.
Microbiology (Reading, England) 1994;140 ( Pt 4)():703-15.
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1994: Pronk J T; van der Linden-Beuman A; Verduyn C; Scheffers W A; van Dijken J P
Propionate metabolism in Saccharomyces cerevisiae: implications for the metabolon hypothesis.
Microbiology (Reading, England) 1994;140 ( Pt 4)():717-22.
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1994: Pronk J T; Wenzel T J; Luttik M A; Klaassen C C; Scheffers W A; Steensma H Y; van Dijken J P
Energetic aspects of glucose metabolism in a pyruvate-dehydrogenase-negative mutant of Saccharomyces cerevisiae.
Microbiology (Reading, England) 1994;140 ( Pt 3)():601-10.
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1993: van Dijken J P; Weusthuis R A; Pronk J T
Kinetics of growth and sugar consumption in yeasts.
Antonie van Leeuwenhoek 1993;63(3-4):343-52.
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