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James Prosser

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James I Prosser; Graeme W Nicol
Archaeal and bacterial ammonia-oxidisers in soil: the quest for niche specialisation and differentiation.
William W Gilbertson; Martin Solan; James I Prosser
Differential effects of microorganism-invertebrate interactions on benthic nitrogen cycling.
James I Prosser
Ecosystem processes and interactions in a morass of diversity.

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All Publications

2012: James I Prosser; Graeme W Nicol
Archaeal and bacterial ammonia-oxidisers in soil: the quest for niche specialisation and differentiation.
Trends in microbiology 2012;20(11):523-31.
2012: William W Gilbertson; Martin Solan; James I Prosser
Differential effects of microorganism-invertebrate interactions on benthic nitrogen cycling.
FEMS microbiology ecology 2012;82(1):11-22.
2012: James I Prosser
Ecosystem processes and interactions in a morass of diversity.
FEMS microbiology ecology 2012;81(3):507-19.
2012: Spela Levičnik-Höfferle; Ines Mandić-Mulec; Graeme W Nicol; Luka Ausec; James I Prosser
Stimulation of thaumarchaeal ammonia oxidation by ammonia derived from organic nitrogen but not added inorganic nitrogen.
FEMS microbiology ecology 2012;80(1):114-23.
2012: Silke Langenheder; James I Prosser; Mark T Bulling; Martin Solan
Role of functionally dominant species in varying environmental regimes: evidence for the performance-enhancing effect of biodiversity.
BMC ecology 2012;12():14.
2011: Laura E Lehtovirta-Morley; James I Prosser; Kilian Stoecker; Andreas Vilcinskas; Graeme W Nicol
Cultivation of an obligate acidophilic ammonia oxidizer from a nitrifying acid soil.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(38):15892-7.
2011: Daniel T Verhamme; James I Prosser; Graeme W Nicol
Ammonia concentration determines differential growth of ammonia-oxidising archaea and bacteria in soil microcosms.
The ISME journal 2011;5(6):1067-71.
2010: Robert J Barnes; Christopher J van der Gast; Olga Riba; Laura E Lehtovirta; James I Prosser; Peter J Dobson; Ian P Thompson
The impact of zero-valent iron nanoparticles on a river water bacterial community.
Journal of hazardous materials 2010;184(1-3):73-80.
2010: Cécile Gubry-Rangin; Graeme W Nicol; James I Prosser
Archaea rather than bacteria control nitrification in two agricultural acidic soils.
FEMS microbiology ecology 2010;74(3):566-74.
2010: Špela Höfferle; Graeme W Nicol; Levin Pal; Janez Hacin; James I Prosser; Ines Mandić-Mulec
Ammonium supply rate influences archaeal and bacterial ammonia oxidizers in a wetland soil vertical profile.
FEMS microbiology ecology 2010;74(2):302-15.
2010: Nejc Stopnišek; Cécile Gubry-Rangin; Spela Höfferle; Graeme W Nicol; Ines Mandic-Mulec; James I Prosser
Thaumarchaeal ammonia oxidation in an acidic forest peat soil is not influenced by ammonium amendment.
Applied and environmental microbiology 2010;76(22):7626-34.
2010: Li-Mei Zhang; Pierre R Offre; Ji-Zheng He; Daniel T Verhamme; Graeme W Nicol; James I Prosser
Autotrophic ammonia oxidation by soil thaumarchaea.
Proceedings of the National Academy of Sciences of the United States of America 2010;107(40):17240-5.
2010: Thomas E Freitag; Sylvia Toet; Phil Ineson; James I Prosser
Links between methane flux and transcriptional activities of methanogens and methane oxidizers in a blanket peat bog.
FEMS microbiology ecology 2010;73(1):157-65.
2010: James I Prosser
Replicate or lie.
Environmental microbiology 2010;12(7):1806-10.
2010: Maria Tourna; Thomas E Freitag; James I Prosser
Stable isotope probing analysis of interactions between ammonia oxidizers.
Applied and environmental microbiology 2010;76(8):2468-77.
2010: Silke Langenheder; Mark T Bulling; Martin Solan; James I Prosser
Bacterial biodiversity-ecosystem functioning relations are modified by environmental complexity.
PloS one 2010;5(5):e10834.
2009: Laura E Lehtovirta; James I Prosser; Graeme W Nicol
Soil pH regulates the abundance and diversity of Group 1.1c Crenarchaeota.
FEMS microbiology ecology 2009;70(3):367-76.
2009: Thomas E Freitag; James I Prosser
Correlation of methane production and functional gene transcriptional activity in a peat soil.
Applied and environmental microbiology 2009;75(21):6679-87.
2009: Janine B Illian; James I Prosser; Kate L Baker; J Ignacio Rangel-Castro
Functional principal component data analysis: a new method for analysing microbial community fingerprints.
Journal of microbiological methods 2009;79(1):89-95.
2009: Pierre Offre; James I Prosser; Graeme W Nicol
Growth of ammonia-oxidizing archaea in soil microcosms is inhibited by acetylene.
FEMS microbiology ecology 2009;70(1):99-108.
2009: Imke E Mulder; Bettina Schmidt; Christopher R Stokes; Marie Lewis; Mick Bailey; Rustam I Aminov; James I Prosser; Bhupinder P Gill; John R Pluske; Claus-Dieter Mayer; Corran C Musk; Denise Kelly
Environmentally-acquired bacteria influence microbial diversity and natural innate immune responses at gut surfaces.
BMC biology 2009;7():79.
2008: Feth el Zahar Haichar; Christine Marol; Odile Berge; J Ignacio Rangel-Castro; James I Prosser; Jérôme Balesdent; Thierry HEULIN; Wafa Achouak
Plant host habitat and root exudates shape soil bacterial community structure.
The ISME journal 2008;2(12):1221-30.
2008: James I Prosser; Graeme W Nicol
Relative contributions of archaea and bacteria to aerobic ammonia oxidation in the environment.
Environmental microbiology 2008;10(11):2931-41.
2008: Graeme W Nicol; Sven Leininger; Christa Schleper; James I Prosser
The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria.
Environmental microbiology 2008;10(11):2966-78.
2008: Silke Langenheder; James I Prosser
Resource availability influences the diversity of a functional group of heterotrophic soil bacteria.
Environmental microbiology 2008;10(9):2245-56.
2008: Maria Tourna; Thomas E Freitag; Graeme W Nicol; James I Prosser
Growth, activity and temperature responses of ammonia-oxidizing archaea and bacteria in soil microcosms.
Environmental microbiology 2008;10(5):1357-64.
2008: Xavier Le Roux; Franck Poly; Pauline Currey; Claire Commeaux; Brigitte Hai; Graeme W Nicol; James I Prosser; Michael Schloter; Eléonore Attard; Katja Klumpp
Effects of aboveground grazing on coupling among nitrifier activity, abundance and community structure.
The ISME journal 2008;2(2):221-32.
2008: Marina Héry; Andrew Singer; Deepak Kumaresan; Levente Bodrossy; Nancy Stralis-Pavese; James I Prosser; Ian P Thompson; J Colin Murrell
Effect of earthworms on the community structure of active methanotrophic bacteria in a landfill cover soil.
The ISME journal 2008;2(1):92-104.
2007: Aurélie Cébron; Levente Bodrossy; yin chen; Andrew Singer; Ian P Thompson; James I Prosser; J Colin Murrell
Identity of active methanotrophs in landfill cover soil as revealed by DNA-stable isotope probing.
FEMS microbiology ecology 2007;62(1):12-23.
2007: Sophie Wertz; Valérie Degrange; James I Prosser; Franck Poly; Claire Commeaux; Nadine Guillaumaud; Xavier Le Roux
Decline of soil microbial diversity does not influence the resistance and resilience of key soil microbial functional groups following a model disturbance.
Environmental microbiology 2007;9(9):2211-9.
2007: Christoph Stephan Schmidt; Kristine A Hultman; David Robinson; Ken Killham; James I Prosser
PCR profiling of ammonia-oxidizer communities in acidic soils subjected to nitrogen and sulphur deposition.
FEMS microbiology ecology 2007;61(2):305-16.
2007: James I Prosser; Brendan J M Bohannan; Tom P Curtis; Richard J Ellis; Mary K Firestone; Robert P Freckleton; Jessica L Green; Laura E Green; Ken Killham; Jack J Lennon; A Mark Osborn; Martin Solan; Christopher J van der Gast; J Peter W Young
The role of ecological theory in microbial ecology.
Nature reviews. Microbiology 2007;5(5):384-92.
2007: Graeme W Nicol; Colin Campbell; Stephen J Chapman; James I Prosser
Afforestation of moorland leads to changes in crenarchaeal community structure.
FEMS microbiology ecology 2007;60(1):51-9.
2007: Aurélie Cébron; Levente Bodrossy; Nancy Stralis-Pavese; Andrew Singer; Ian P Thompson; James I Prosser; J Colin Murrell
Nutrient amendments in soil DNA stable isotope probing experiments reduce the observed methanotroph diversity.
Applied and environmental microbiology 2007;73(3):798-807.
2007: Paolina Garbeva; Elizabeth M Baggs; James I Prosser
Phylogeny of nitrite reductase (nirK) and nitric oxide reductase (norB) genes from Nitrosospira species isolated from soil.
FEMS microbiology letters 2007;266(1):83-9.
2006: Sophie Wertz; Valérie Degrange; James I Prosser; Franck Poly; Claire Commeaux; Thomas E Freitag; Nadine Guillaumaud; Xavier Le Roux
Maintenance of soil functioning following erosion of microbial diversity.
Environmental microbiology 2006;8(12):2162-9.
2006: S Leininger; Tim Urich; M Schloter; L Schwark; J Qi; Graeme W Nicol; James I Prosser; Stephan C Schuster; Christa Schleper
Archaea predominate among ammonia-oxidizing prokaryotes in soils.
Nature 2006;442(7104):806-9.
2006: Graeme W Nicol; Dagmar Tscherko; Lisa Chang; Ute Hammesfahr; James I Prosser
Crenarchaeal community assembly and microdiversity in developing soils at two sites associated with deglaciation.
Environmental microbiology 2006;8(8):1382-93.
2006: Shahid Mahmood; Thomas E Freitag; James I Prosser
Comparison of PCR primer-based strategies for characterization of ammonia oxidizer communities in environmental samples.
FEMS microbiology ecology 2006;56(3):482-93.
2006: Shahid Mahmood; James I Prosser
The influence of synthetic sheep urine on ammonia oxidizing bacterial communities in grassland soil.
FEMS microbiology ecology 2006;56(3):444-54.
2006: Ashok K Patra; Luc Abbadie; Annie Clays-Josserand; Valérie Degrange; Susan J Grayston; Nadine Guillaumaud; Pierre Loiseau; Frédérique Louault; Shahid Mahmood; Sylvie Nazaret; Laurent Philippot; Franck Poly; James I Prosser; Xavier Le Roux
Effects of management regime and plant species on the enzyme activity and genetic structure of N-fixing, denitrifying and nitrifying bacterial communities in grassland soils.
Environmental microbiology 2006;8(6):1005-16.
2006: Thomas E Freitag; Lisa Chang; James I Prosser
Changes in the community structure and activity of betaproteobacterial ammonia-oxidizing sediment bacteria along a freshwater-marine gradient.
Environmental microbiology 2006;8(4):684-96.
2006: Liz J Shaw; Graeme W Nicol; Zena Smith; Jon Fear; James I Prosser; Elizabeth M Baggs
Nitrosospira spp. can produce nitrous oxide via a nitrifier denitrification pathway.
Environmental microbiology 2006;8(2):214-22.
2006: James I Prosser; J Ignacio Rangel-Castro; Ken Killham
Studying plant-microbe interactions using stable isotope technologies.
Current opinion in biotechnology 2006;17(1):98-102.
2005: Thomas E Freitag; Lisa Chang; Christopher D Clegg; James I Prosser
Influence of inorganic nitrogen management regime on the diversity of nitrite-oxidizing bacteria in agricultural grassland soils.
Applied and environmental microbiology 2005;71(12):8323-34.
2005: Shahid Mahmood; Graeme I Paton; James I Prosser
Cultivation-independent in situ molecular analysis of bacteria involved in degradation of pentachlorophenol in soil.
Environmental microbiology 2005;7(9):1349-60.
2005: J Ignacio Rangel-Castro; Ken Killham; Nick Ostle; Graeme W Nicol; Ian C Anderson; Charlie M Scrimgeour; Philip Ineson; Andrew A Meharg; James I Prosser
Stable isotope probing analysis of the influence of liming on root exudate utilization by soil microorganisms.
Environmental microbiology 2005;7(6):828-38.
2005: Gordon Webster; T Martin Embley; Thomas E Freitag; Zena Smith; James I Prosser
Links between ammonia oxidizer species composition, functional diversity and nitrification kinetics in grassland soils.
Environmental microbiology 2005;7(5):676-84.
2005: J Ignacio Rangel-Castro; James I Prosser; Nick Ostle; Charlie M Scrimgeour; Ken Killham; Andrew A Meharg
Flux and turnover of fixed carbon in soil microbial biomass of limed and unlimed plots of an upland grassland ecosystem.
Environmental microbiology 2005;7(4):544-52.
2005: Graeme W Nicol; Dagmar Tscherko; T Martin Embley; James I Prosser
Primary succession of soil Crenarchaeota across a receding glacier foreland.
Environmental microbiology 2005;7(3):337-47.
2005: M S Girvan; Colin Campbell; Ken Killham; James I Prosser; L Anne Glover
Bacterial diversity promotes community stability and functional resilience after perturbation.
Environmental microbiology 2005;7(3):301-13.
2004: Graeme W Nicol; Gordon Webster; L Anne Glover; James I Prosser
Differential response of archaeal and bacterial communities to nitrogen inputs and pH changes in upland pasture rhizosphere soil.
Environmental microbiology 2004;6(8):861-7.
2004: Thomas E Freitag; James I Prosser
Differences between betaproteobacterial ammonia-oxidizing communities in marine sediments and those in overlying water.
Applied and environmental microbiology 2004;70(6):3789-93.
2003: Graeme W Nicol; L Anne Glover; James I Prosser
Spatial analysis of archaeal community structure in grassland soil.
Applied and environmental microbiology 2003;69(12):7420-9.
2003: Ian C Anderson; Colin Campbell; James I Prosser
Diversity of fungi in organic soils under a moorland--Scots pine (Pinus sylvestris L.) gradient.
Environmental microbiology 2003;5(11):1121-32.
2003: Thomas E Freitag; Thomas Klenke; Wolfgang E Krumbein; Gisela Gerdes; James I Prosser
Effect of anoxia and high sulphide concentrations on heterotrophic microbial communities in reduced surface sediments (Black Spots) in sandy intertidal flats of the German Wadden Sea.
FEMS microbiology ecology 2003;44(3):291-301.
2003: Cristina Lagido; Ian J Wilson; L Anne Glover; James I Prosser
A model for bacterial conjugal gene transfer on solid surfaces.
FEMS microbiology ecology 2003;44(1):67-78.
2003: Thomas E Freitag; James I Prosser
Community structure of ammonia-oxidizing bacteria within anoxic marine sediments.
Applied and environmental microbiology 2003;69(3):1359-71.
2003: Graeme W Nicol; L Anne Glover; James I Prosser
The impact of grassland management on archaeal community structure in upland pasture rhizosphere soil.
Environmental microbiology 2003;5(3):152-62.
2003: Ian C Anderson; Colin Campbell; James I Prosser
Potential bias of fungal 18S rDNA and internal transcribed spacer polymerase chain reaction primers for estimating fungal biodiversity in soil.
Environmental microbiology 2003;5(1):36-47.
2002: Regin Rønn; Allison E McCaig; Bryan S Griffiths; James I Prosser
Impact of protozoan grazing on bacterial community structure in soil microcosms.
Applied and environmental microbiology 2002;68(12):6094-105.
2002: A C Metcalfe; Martin Krsek; G W Gooday; James I Prosser; Elizabeth M H Wellington
Molecular analysis of a bacterial chitinolytic community in an upland pasture.
Applied and environmental microbiology 2002;68(10):5042-50.
2002: James I Prosser; T Martin Embley
Cultivation-based and molecular approaches to characterisation of terrestrial and aquatic nitrifiers.
Antonie van Leeuwenhoek 2002;81(1-4):165-79.
2002: Rebekka R E Artz; Kirk T Semple; Ken Killham; James I Prosser; Graeme I Paton
The potential for anaerobic mineralisation of hydrocarbon constituents of oily drill cuttings from the North Sea seabed.
Journal of environmental monitoring : JEM 2002;4(4):553-7.
2002: Stefan Radajewski; Gordon Webster; David S Reay; Samantha A Morris; Philip Ineson; David B Nedwell; James I Prosser; J Colin Murrell
Identification of active methylotroph populations in an acidic forest soil by stable-isotope probing.
Microbiology (Reading, England) 2002;148(Pt 8):2331-42.
2002: Nardia J Baxter; Robert Hirt; Levente Bodrossy; Kornel L Kovacs; T Martin Embley; James I Prosser; J Colin Murrell
The ribulose-1,5-bisphosphate carboxylase/oxygenase gene cluster of Methylococcus capsulatus (Bath).
Archives of microbiology 2002;177(4):279-89.
2002: Gordon Webster; T Martin Embley; James I Prosser
Grassland management regimens reduce small-scale heterogeneity and species diversity of beta-proteobacterial ammonia pxidizer populations.
Applied and environmental microbiology 2002;68(1):20-30.
2001: Allison E McCaig; L Anne Glover; James I Prosser
Numerical analysis of grassland bacterial community structure under different land management regimens by using 16S ribosomal DNA sequence data and denaturing gradient gel electrophoresis banding patterns.
Applied and environmental microbiology 2001;67(10):4554-9.
2001: S A Burton; James I Prosser
Autotrophic ammonia oxidation at low pH through urea hydrolysis.
Applied and environmental microbiology 2001;67(7):2952-7.
2000: C J Phillips; D Harris; SL Dollhopf; K L Gross; James I Prosser; Eldor A Paul
Effects of agronomic treatments on structure and function of ammonia-oxidizing communities.
Applied and environmental microbiology 2000;66(12):5410-8.
1999: M A Bruns; John R Stephen; George A Kowalchuk; James I Prosser; Eldor A Paul
Comparative diversity of ammonia oxidizer 16S rRNA gene sequences in native, tilled, and successional soils.
Applied and environmental microbiology 1999;65(7):2994-3000.
1999: Allison E McCaig; L Anne Glover; James I Prosser
Molecular analysis of bacterial community structure and diversity in unimproved and improved upland grass pastures.
Applied and environmental microbiology 1999;65(4):1721-30.
1999: C J Phillips; Zena Smith; T Martin Embley; James I Prosser
Phylogenetic differences between particle-associated and planktonic ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in the Northwestern Mediterranean Sea.
Applied and environmental microbiology 1999;65(2):779-86.
1999: Allison E McCaig; C J Phillips; John R Stephen; George A Kowalchuk; S M Harvey; R A Herbert; T Martin Embley; James I Prosser
Nitrogen cycling and community structure of proteobacterial beta-subgroup ammonia-oxidizing bacteria within polluted marine fish farm sediments.
Applied and environmental microbiology 1999;65(1):213-20.
1997: S E Batchelor; M Cooper; Siri Ram Chhabra; L Anne Glover; GS Stewart; P Williams; James I Prosser
Cell density-regulated recovery of starved biofilm populations of ammonia-oxidizing bacteria.
Applied and environmental microbiology 1997;63(6):2281-6.
1997: George A Kowalchuk; John R Stephen; Wietse de Boer; James I Prosser; T Martin Embley; JW Woldendorp
Analysis of ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments.
Applied and environmental microbiology 1997;63(4):1489-97.
1996: John R Stephen; Allison E McCaig; Z Smith; James I Prosser; T Martin Embley
Molecular diversity of soil and marine 16S rRNA gene sequences related to beta-subgroup ammonia-oxidizing bacteria.
Applied and environmental microbiology 1996;62(11):4147-54.
1996: A J Tough; James I Prosser
Experimental verification of a mathematical model for pelleted growth of Streptomyces coelicolor A3(2) in submerged batch culture.
Microbiology (Reading, England) 1996;142 ( Pt 3)():639-48.
1996: James I Prosser; Ken Killham; L Anne Glover; E A Rattray
Luminescence-based systems for detection of bacteria in the environment.
Critical reviews in biotechnology 1996;16(2):157-83.
1995: E A Rattray; James I Prosser; L Anne Glover; Ken Killham
Characterization of rhizosphere colonization by luminescent Enterobacter cloacae at the population and single-cell levels.
Applied and environmental microbiology 1995;61(8):2950-7.
1994: Allison E McCaig; T Martin Embley; James I Prosser
Molecular analysis of enrichment cultures of marine ammonia oxidisers.
FEMS microbiology letters 1994;120(3):363-7.
1994: S Duncan; L Anne Glover; Ken Killham; James I Prosser
Luminescence-based detection of activity of starved and viable but nonculturable bacteria.
Applied and environmental microbiology 1994;60(4):1308-16.
1994: James I Prosser
Molecular marker systems for detection of genetically engineered micro-organisms in the environment.
Microbiology (Reading, England) 1994;140 ( Pt 1)():5-17.
1993: N Cook; D J Silcock; R N Waterhouse; James I Prosser; L Anne Glover; Ken Killham
Construction and detection of bioluminescent strains of Bacillus subtilis.
The Journal of applied bacteriology 1993;75(4):350-9.
1992: A Meikle; Ken Killham; James I Prosser; L Anne Glover
Luminometric measurement of population activity of genetically modified Pseudomonas fluorescens in the soil.
FEMS microbiology letters 1992;78(2-3):217-20.
1992: D J Silcock; R N Waterhouse; L Anne Glover; James I Prosser; Ken Killham
Detection of a single genetically modified bacterial cell in soil by using charge coupled device-enhanced microscopy.
Applied and environmental microbiology 1992;58(8):2444-8.
1991: S J Powell; James I Prosser
Protection of Nitrosomonas europaea colonizing clay minerals from inhibition by nitrapyrin.
Journal of general microbiology 1991;137(8):1923-9.
1990: E A Rattray; James I Prosser; Ken Killham; L Anne Glover
Luminescence-based nonextractive technique for in situ detection of Escherichia coli in soil.
Applied and environmental microbiology 1990;56(11):3368-74.
1990: D I Gray; Graham W Gooday; James I Prosser
Apical hyphal extension in Streptomyces coelicolor A3(2).
Journal of general microbiology 1990;136(6):1077-84.
1986: S J Powell; James I Prosser
Inhibition of ammonium oxidation by nitrapyrin in soil and liquid culture.
Applied and environmental microbiology 1986;52(4):782-7.