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Samuel Purvine

Research Profile

Occupations

Proteomics

Chemicals & Drugs

Procedures

Genes & Molecular Sequences

Concepts & Ideas

Activities & Behaviors

Software

Physiology

Gene Expression Regulation, Bacterial

Co-author Network

Publications

TOP 3
Dong Wang; Matthew C Chambers; Kan Chen; Chang Y Chung; Surendra Dasari; Jerry D Holman; Daniel C Liebler; Matthew E Monroe; Daniel J Orton; Samuel O Purvine; Kristie L Rose; David L Tabb
Basophile: accurate fragment charge state prediction improves Peptide identification rates.
Charles Ansong; Lacie M Chauvignè-Hines; Suereta Fortuin; Christoph Grundner; Daniel H Haft; Michael P Lewis; Anja R Ollodart; Corrie Ortega; Samuel H Payne; Samuel O Purvine; Anil K Shukla; Richard D Smith; Joshua N Adkins; Aaron T Wright
Identification of widespread adenosine nucleotide binding in Mycobacterium tuberculosis.
Frank O Aylward; Kerrie W Barry; Kristin E Burnum; Sandra M Adams; Lynne A Goodwin; Mary S Lipton; Carrie D Nicora; Paul D Piehowski; Samuel O Purvine; Jarrod J Scott; Richard D Smith; Gabriel J Starrett; Garret Suen; Susannah G Tringe; Cameron R Currie
Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens.

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All Publications

2013: Dong Wang; Matthew C Chambers; Kan Chen; Chang Y Chung; Surendra Dasari; Jerry D Holman; Daniel C Liebler; Matthew E Monroe; Daniel J Orton; Samuel O Purvine; Kristie L Rose; David L Tabb
Basophile: accurate fragment charge state prediction improves Peptide identification rates.
Genomics, proteomics & bioinformatics 2013;11(2):86-95.
2013: Charles Ansong; Lacie M Chauvignè-Hines; Suereta Fortuin; Christoph Grundner; Daniel H Haft; Michael P Lewis; Anja R Ollodart; Corrie Ortega; Samuel H Payne; Samuel O Purvine; Anil K Shukla; Richard D Smith; Joshua N Adkins; Aaron T Wright
Identification of widespread adenosine nucleotide binding in Mycobacterium tuberculosis.
Chemistry & biology 2013;20(1):123-33.
2012: Frank O Aylward; Kerrie W Barry; Kristin E Burnum; Sandra M Adams; Lynne A Goodwin; Mary S Lipton; Carrie D Nicora; Paul D Piehowski; Samuel O Purvine; Jarrod J Scott; Richard D Smith; Gabriel J Starrett; Garret Suen; Susannah G Tringe; Cameron R Currie
Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens.
The ISME journal 2012;6(9):1688-701.
2012: Joshua F Alfaro; David G Camp; Therese R W Clauss; Cheng-Xin Gong; Gerald W Hart; Donald F Hunt; Matthew E Monroe; Samuel O Purvine; Jeffrey Shabanowitz; Pamela Stanley; Zihao Wang; Feng Yang; Joshua T Aldrich; Richard D Smith
Tandem mass spectrometry identifies many mouse brain O-GlcNAcylated proteins including EGF domain-specific O-GlcNAc transferase targets.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(19):7280-5.
2012: Yufeng Shen; Samuel O Purvine; Nikola Tolić; Richard D Smith
Improving collision induced dissociation (CID), high energy collision dissociation (HCD), and electron transfer dissociation (ETD) fourier transform MS/MS degradome-peptidome identifications using high accuracy mass information.
Journal of proteome research 2012;11(2):668-77.
2012: Alexandra C Schrimpe-Rutledge; Richard D Smith; Charles Ansong; Heather M Brewer; Sadhana Chauhan; Bryan C Frank; Marcus B Jones; Matthew E Monroe; Vladimir L Motin; Samuel H Payne; Scott N Peterson; Samuel O Purvine; James A Sanford; Joshua N Adkins
Comparative omics-driven genome annotation refinement: application across Yersiniae.
PloS one 2012;7(3):e33903.
2011: Shishir P S Chundawat; Venkatesh Balan; Dahai Gao; Mary S Lipton; Samuel O Purvine; Nirmal Uppugundla; Bruce E Dale
Proteomics-based compositional analysis of complex cellulase-hemicellulase mixtures.
Journal of proteome research 2011;10(10):4365-72.
2011: Haizhen Zhang; Eric D Merkley; Roslyn N Brown; James K Fredrickson; Eric E Merkley; Matthew Monroe; Ronald J Moore; Jea H Park; Ljiljana Paša-Tolić; Samuel O Purvine; Wei-Jun Qian; Liang Shi; Richard D Smith; Yuexi Wang; Feng Yang; Mary S Lipton
Identification of c-type heme-containing peptides using nonactivated immobilized metal affinity chromatography resin enrichment and higher-energy collisional dissociation.
Analytical chemistry 2011;83(19):7260-8.
2011: Yufeng Shen; Nikola Tolić; Fang Xie; Rui Zhao; Gordon A Anderson; Ronald J Moore; Samuel O Purvine; Athena A Schepmoes; Richard D Smith
Effectiveness of CID, HCD, and ETD with FT MS/MS for degradomic-peptidomic analysis: comparison of peptide identification methods.
Journal of proteome research 2011;10(9):3929-43.
2011: Jeffrey R Stanley; Joshua N Adkins; Gordon A Anderson; Yuliya V Karpievitch; Matthew E Monroe; Samuel O Purvine; Gordon W Slysz; Richard D Smith; Alan R Dabney
A statistical method for assessing peptide identification confidence in accurate mass and time tag proteomics.
Analytical chemistry 2011;83(16):6135-40.
2011: Benjamin J Polacco; Samuel O Purvine; Anne O Summers; Erika M Zink; Stephen P Lavoie; Mary S Lipton; Susan M Miller
Discovering mercury protein modifications in whole proteomes using natural isotope distributions observed in liquid chromatography-tandem mass spectrometry.
Molecular & cellular proteomics : MCP 2011;10(8):M110.004853.
2011: Yingchun Wang; Feng Yang; Yi Fu; Xiahe Huang; Wei Wang; Xinning Jiang; Marina A Gritsenko; Rui Zhao; Matthew E Monore; Olivier Pertz; Samuel O Purvine; Daniel J Orton; Jon M Jacobs; David G Camp; Richard D Smith; Richard L Klemke
Spatial phosphoprotein profiling reveals a compartmentalized extracellular signal-regulated kinase switch governing neurite growth and retraction.
The Journal of biological chemistry 2011;286(20):18190-201.
2011: Lindsay R Dresang; Huichen Feng; Marina A Gritsenko; Jon M Jacobs; Zhihua Li; Patrick S Moore; Samuel O Purvine; Richard D Smith; Bill Sugden; Jeremy R Teuton; David G Camp; Yuan Chang
Coupled transcriptome and proteome analysis of human lymphotropic tumor viruses: insights on the detection and discovery of viral genes.
BMC genomics 2011;12():625.
2011: Charles Ansong; Meagan C Burnet; Fred Heffron; Marcus Jones; Jessica L Martin; Michael McClelland; Matthew E Monroe; Samuel H Payne; Scott N Peterson; Steffen Porwollik; Samuel O Purvine; Richard D Smith; Nikola Tolić; Pratap Venepally; Hyunjin Yoon; Joshua N Adkins
Experimental annotation of post-translational features and translated coding regions in the pathogen Salmonella Typhimurium.
BMC genomics 2011;12():433.
2011: Kristin E Burnum; Stephen J Callister; Carrie D Nicora; Samuel O Purvine; Philip Hugenholtz; Falk Warnecke; Rudolf H Scheffrahn; Richard D Smith; Mary S Lipton
Proteome insights into the symbiotic relationship between a captive colony of Nasutitermes corniger and its hindgut microbiome.
The ISME journal 2011;5(1):161-4.
2010: Hee-Jung Jung; Samuel O Purvine; Hokeun Kim; Vladislav A Petyuk; Seok-Won Hyung; Matthew E Monroe; Dong-Gi Mun; Kyong-Chul Kim; Jong-Moon Park; Su-Jin Kim; Nikola Tolic; Gordon W Slysz; Ronald J Moore; Rui Zhao; Joshua N Adkins; Gordon A Anderson; Hookeun Lee; David G Camp; Myeong-Hee Yu; Richard D Smith; Sang-Won Lee
Integrated post-experiment monoisotopic mass refinement: an integrated approach to accurately assign monoisotopic precursor masses to tandem mass spectrometric data.
Analytical chemistry 2010;82(20):8510-8.
2010: Yufeng Shen; Nikola Tolić; Samuel O Purvine; Richard D Smith
Identification of disulfide bonds in protein proteolytic degradation products using de novo-protein unique sequence tags approach.
Journal of proteome research 2010;9(8):4053-60.
2010: Nathan E Lewis; Kim K Hixson; Tom M Conrad; Joshua A Lerman; Pep Charusanti; Ashoka D Polpitiya; Joshua N Adkins; Gunnar Schramm; Samuel O Purvine; Daniel Lopez-Ferrer; Karl K Weitz; Roland Eils; Rainer König; Richard D Smith; Bernhard Ø Palsson
Omic data from evolved E. coli are consistent with computed optimal growth from genome-scale models.
Molecular systems biology 2010;6():390.
2010: Haizhen Zhang; Roslyn N Brown; Wei-Jun Qian; Matthew Monroe; Samuel O Purvine; Ronald J Moore; Marina A Gritsenko; Liang Shi; Margaret F Romine; James K Fredrickson; Ljiljana Pasa-Tolić; Richard D Smith; Mary S Lipton
Quantitative analysis of cell surface membrane proteins using membrane-impermeable chemical probe coupled with 18O labeling.
Journal of proteome research 2010;9(5):2160-9.
2010: Yufeng Shen; Tao Liu; Nikola Tolić; Brianne O Petritis; Rui Zhao; Ronald J Moore; Samuel O Purvine; David G Camp; Richard D Smith
Strategy for degradomic-peptidomic analysis of human blood plasma.
Journal of proteome research 2010;9(5):2339-46.
2010: Vladislav A Petyuk; Anoop M Mayampurath; Matthew Monroe; Ashoka D Polpitiya; Samuel O Purvine; Gordon A Anderson; David G Camp; Richard D Smith
DtaRefinery, a software tool for elimination of systematic errors from parent ion mass measurements in tandem mass spectra data sets.
Molecular & cellular proteomics : MCP 2010;9(3):486-96.
2010: Bryan M Ham; Hemalatha Jayachandran; Feng Yang; Navdeep Jaitly; Ashoka D Polpitiya; Matthew Monroe; Ling Wang; Rui Zhao; Samuel O Purvine; Eric A Livesay; David G Camp; Sandra Rossie; Richard D Smith
Novel Ser/Thr protein phosphatase 5 (PP5) regulated targets during DNA damage identified by proteomics analysis.
Journal of proteome research 2010;9(2):945-53.
2010: Yufeng Shen; Nikola Tolić; Tao Liu; Rui Zhao; Brianne O Petritis; Marina A Gritsenko; David G Camp; Ronald J Moore; Samuel O Purvine; Francisco J Esteva; Richard D Smith
Blood peptidome-degradome profile of breast cancer.
PloS one 2010;5(10):e13133.
2010: Steven E Schutzer; Tao Liu; Benjamin Natelson; Thomas E Angel; Athena A Schepmoes; Samuel O Purvine; Kim K Hixson; Mary S Lipton; David G Camp; Patricia K Coyle; Richard D Smith; Jonas Bergquist
Establishing the proteome of normal human cerebrospinal fluid.
PloS one 2010;5(6):e10980.
2009: Feng Yang; Si Wu; David L Stenoien; Rui Zhao; Matthew Monroe; Marina A Gritsenko; Samuel O Purvine; Ashoka D Polpitiya; Nikola Tolić; Qibin Zhang; Angela D Norbeck; Daniel J Orton; Ronald J Moore; Keqi Tang; Gordon A Anderson; Ljiljana Pasa-Tolić; David G Camp; Richard D Smith
Combined pulsed-Q dissociation and electron transfer dissociation for identification and quantification of iTRAQ-labeled phosphopeptides.
Analytical chemistry 2009;81(10):4137-43.
2009: David L Springer; John H Miller; Sherry L Spinelli; Ljiljana Pasa-Tolic; Samuel O Purvine; Donald S Daly; Richard C Zangar; Shuangshuang Jin; Neil Blumberg; Charles W Francis; Mark B Taubman; Ann E Casey; Steven D Wittlin; Richard P Phipps
Platelet proteome changes associated with diabetes and during platelet storage for transfusion.
Journal of proteome research 2009;8(5):2261-72.
2008: Qibin Zhang; Athena A Schepmoes; Jonathan W C Brock; Si Wu; Ronald J Moore; Samuel O Purvine; John W Baynes; Richard D Smith; Tom Metz
Improved methods for the enrichment and analysis of glycated peptides.
Analytical chemistry 2008;80(24):9822-9.
2008: Aleksey V Tolmachev; Matthew E Monroe; Samuel O Purvine; Ronald J Moore; Navdeep Jaitly; Joshua N Adkins; Gordon A Anderson; Richard D Smith
Characterization of strategies for obtaining confident identifications in bottom-up proteomics measurements using hybrid FTMS instruments.
Analytical chemistry 2008;80(22):8514-25.
2008: Yufeng Shen; Nikola Tolić; Kim K Hixson; Samuel O Purvine; Gordon A Anderson; Richard D Smith
De novo sequencing of unique sequence tags for discovery of post-translational modifications of proteins.
Analytical chemistry 2008;80(20):7742-54.
2008: Shi-Jian Ding; Yingchun Wang; Jon M Jacobs; Wei-Jun Qian; Feng Yang; Aleksey V Tolmachev; Xiuxia Du; Wei Wang; Ronald J Moore; Matthew E Monroe; Samuel O Purvine; Katrina Waters; Tyler H Heibeck; Joshua N Adkins; David G Camp; Richard L Klemke; Richard D Smith
Quantitative phosphoproteome analysis of lysophosphatidic acid induced chemotaxis applying dual-step (18)O labeling coupled with immobilized metal-ion affinity chromatography.
Journal of proteome research 2008;7(10):4215-24.
2008: Yufeng Shen; Kim K Hixson; Nikola Tolić; David G Camp; Samuel O Purvine; Ronald J Moore; Richard D Smith
Mass spectrometry analysis of proteome-wide proteolytic post-translational degradation of proteins.
Analytical chemistry 2008;80(15):5819-28.
2008: Xiuxia Du; Feng Yang; Nathan P Manes; David L Stenoien; Matthew Monroe; Joshua N Adkins; David States; Samuel O Purvine; David G Camp; Richard D Smith
Linear discriminant analysis-based estimation of the false discovery rate for phosphopeptide identifications.
Journal of proteome research 2008;7(6):2195-203.
2008: Bryan M Ham; Feng Yang; Hemalatha Jayachandran; Navdeep Jaitly; Matthew Monroe; Marina A Gritsenko; Eric A Livesay; Rui Zhao; Samuel O Purvine; Daniel Orton; Joshua N Adkins; David G Camp; Sandra Rossie; Richard D Smith
The influence of sample preparation and replicate analyses on HeLa Cell phosphoproteome coverage.
Journal of proteome research 2008;7(6):2215-21.
2008: Anoop M Mayampurath; Navdeep Jaitly; Samuel O Purvine; Matthew Monroe; Kenneth J Auberry; Joshua N Adkins; Richard D Smith
DeconMSn: a software tool for accurate parent ion monoisotopic mass determination for tandem mass spectra.
Bioinformatics (Oxford, England) 2008;24(7):1021-3.
2008: Yufeng Shen; Nikola Tolić; Kim K Hixson; Samuel O Purvine; Ljiljana Pasa-Tolić; Wei-Jun Qian; Joshua N Adkins; Ronald J Moore; Richard D Smith
Proteome-wide identification of proteins and their modifications with decreased ambiguities and improved false discovery rates using unique sequence tags.
Analytical chemistry 2008;80(6):1871-82.
2008: Charles Ansong; Samuel O Purvine; Joshua N Adkins; Mary S Lipton; Richard D Smith
Proteogenomics: needs and roles to be filled by proteomics in genome annotation.
Briefings in functional genomics & proteomics 2008;7(1):50-62.
2007: Feng Yang; Navdeep Jaitly; Hemalatha Jayachandran; Quanzhou Luo; Matthew Monroe; Xiuxia Du; Marina A Gritsenko; Rui Zhang; David J Anderson; Samuel O Purvine; Joshua N Adkins; Ronald J Moore; Heather M Mottaz; Shi-Jian Ding; Mary S Lipton; David G Camp; Harold R Udseth; Richard D Smith; Sandra Rossie
Applying a targeted label-free approach using LC-MS AMT tags to evaluate changes in protein phosphorylation following phosphatase inhibition.
Journal of proteome research 2007;6(11):4489-97.
2007: Qibin Zhang; Wei-Jun Qian; Tatyana V Knyushko; Therese R W Clauss; Samuel O Purvine; Ronald J Moore; Colette A Sacksteder; Mark Chin; Desmond J Smith; David G Camp; Diana J Bigelow; Richard D Smith
A method for selective enrichment and analysis of nitrotyrosine-containing peptides in complex proteome samples.
Journal of proteome research 2007;6(6):2257-68.
2007: Nathan P Manes; Jean K Gustin; Joanne Rue; Heather M Mottaz; Samuel O Purvine; Angela D Norbeck; Matthew Monroe; Jennifer S D Zimmer; Tom Metz; Joshua N Adkins; Richard D Smith; Fred Heffron
Targeted protein degradation by Salmonella under phagosome-mimicking culture conditions investigated using comparative peptidomics.
Molecular & cellular proteomics : MCP 2007;6(4):717-27.
2006: Tao Liu; Wei-Jun Qian; Heather M Mottaz; Marina A Gritsenko; Angela D Norbeck; Ronald J Moore; Samuel O Purvine; David G Camp; Richard D Smith
Evaluation of multiprotein immunoaffinity subtraction for plasma proteomics and candidate biomarker discovery using mass spectrometry.
Molecular & cellular proteomics : MCP 2006;5(11):2167-74.
2006: Tao Liu; Wei-Jun Qian; Marina A Gritsenko; wenzhong xiao; Lyle L Moldawer; Amit Kaushal; Matthew Monroe; Susan M Varnum; Ronald J Moore; Samuel O Purvine; Ronald V Maier; Ronald W Davis; Ronald G Tompkins; David G Camp; Richard D Smith
High dynamic range characterization of the trauma patient plasma proteome.
Molecular & cellular proteomics : MCP 2006;5(10):1899-913.
2006: Liang Shi; Joshua N Adkins; James R Coleman; Athena A Schepmoes; Alice Dohnkova; Heather M Mottaz; Angela D Norbeck; Samuel O Purvine; Nathan P Manes; Heather S Smallwood; Haixing Wang; John Forbes; Philippe Gros; Sergio Uzzau; Karin D Rodland; Fred Heffron; Richard D Smith; Thomas C Squier
Proteomic analysis of Salmonella enterica serovar typhimurium isolated from RAW 264.7 macrophages: identification of a novel protein that contributes to the replication of serovar typhimurium inside macrophages.
The Journal of biological chemistry 2006;281(39):29131-40.
2006: Colette A Sacksteder; Jennifer E Whittier; Yijia Xiong; Jinhui Li; Nadezhda A Galeva; Michael E Jacoby; Samuel O Purvine; Todd D Williams; Martin Rechsteiner; Diana J Bigelow; Thomas C Squier
Tertiary structural rearrangements upon oxidation of Methionine145 in calmodulin promotes targeted proteasomal degradation.
Biophysical journal 2006;91(4):1480-93.
2006: Joshua N Adkins; Heather M Mottaz; Angela D Norbeck; Jean K Gustin; Joanne Rue; Therese R W Clauss; Samuel O Purvine; Karin D Rodland; Fred Heffron; Richard D Smith
Analysis of the Salmonella typhimurium proteome through environmental response toward infectious conditions.
Molecular & cellular proteomics : MCP 2006;5(8):1450-61.
2004: Samuel O Purvine; Natali Kolker; Eugene Kolker
Spectral quality assessment for high-throughput tandem mass spectrometry proteomics.
Omics : a journal of integrative biology 2004;8(3):255-65.
2004: Eugene Kolker; Kira S Makarova; Svetlana A Shabalina; Alex F Picone; Samuel O Purvine; Ted Holzman; Tim Cherny; David Armbruster; Robert munson; Grigory Kolesov; Dmitrij Frishman; Michael Galperin
Identification and functional analysis of 'hypothetical' genes expressed in Haemophilus influenzae.
Nucleic acids research 2004;32(8):2353-61.
2004: Samuel O Purvine; Alex F Picone; Eugene Kolker
Standard mixtures for proteome studies.
Omics : a journal of integrative biology 2004;8(1):79-92.
2004: Anu Raghunathan; Nathan Price; Michael Galperin; Kira S Makarova; Samuel O Purvine; Alex F Picone; Tim Cherny; Tao Xie; Thomas J Reilly; Robert munson; Ryan E Tyler; Brian Akerley; Arnold L. Smith; Bernhard Ø Palsson; Eugene Kolker
In Silico Metabolic Model and Protein Expression of Haemophilus influenzae Strain Rd KW20 in Rich Medium.
Omics : a journal of integrative biology 2004;8(1):25-41.
2003: Eugene Kolker; Samuel O Purvine; Michael Galperin; Sergey Stolyar; David R Goodlett; Alexey I Nesvizhskii; Andrew Keller; Tao Xie; Jimmy K Eng; Eugene Yi; Leroy Hood; Alex F Picone; Tim Cherny; Brian C Tjaden; Andrew F Siegel; Thomas J Reilly; Kira S Makarova; Bernhard Ø Palsson; Arnold L. Smith
Initial proteome analysis of model microorganism Haemophilus influenzae strain Rd KW20.
Journal of bacteriology 2003;185(15):4593-602.
2003: Tina Guina; Manhong Wu; Samuel I Miller; Samuel O Purvine; Eugene C Yi; Jimmy Eng; David R Goodlett; Ruedi Aebersold; Robert Ernst; Kimberly A Lee
Proteomic analysis of Pseudomonas aeruginosa grown under magnesium limitation.
Journal of the American Society for Mass Spectrometry 2003;14(7):742-51.
2003: Samuel O Purvine; Jason-Thomas Eppel; Eugene C Yi; David R Goodlett
Shotgun collision-induced dissociation of peptides using a time of flight mass analyzer.
Proteomics 2003;3(6):847-50.
2003: Tina Guina; Samuel O Purvine; Eugene C Yi; Jimmy Eng; David R Goodlett; Ruedi Aebersold; Samuel I Miller
Quantitative proteomic analysis indicates increased synthesis of a quinolone by Pseudomonas aeruginosa isolates from cystic fibrosis airways.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(5):2771-6.
2003: Jeffrey A Ranish; Eugene C Yi; Deena M Leslie; Samuel O Purvine; David R Goodlett; Jimmy Eng; Ruedi Aebersold
The study of macromolecular complexes by quantitative proteomics.
Nature genetics 2003;33(3):349-55.
2002: Eugene C Yi; Marcello Marelli; Hookeun Lee; Samuel O Purvine; Ruedi Aebersold; John D Aitchison; David R Goodlett
Approaching complete peroxisome characterization by gas-phase fractionation.
Electrophoresis 2002;23(18):3205-16.
2002: Eugene Kolker; Samuel O Purvine; Alex F Picone; Tim Cherny; Brian Akerley; Robert munson; Bernhard Ø Palsson; Dayle A Daines; Arnold L. Smith
H. influenzae Consortium: integrative study of H. influenzae-human interactions.
Omics : a journal of integrative biology 2002;6(4):341-8.
2002: Andrew Keller; Samuel O Purvine; Alexey I Nesvizhskii; Sergey Stolyar; David R Goodlett; Eugene Kolker
Experimental protein mixture for validating tandem mass spectral analysis.
Omics : a journal of integrative biology 2002;6(2):207-12.
2001: David R Goodlett; Andrew Keller; Julian D Watts; R Newitt; Eugene C Yi; Samuel O Purvine; Jimmy K Eng; Priska D von Haller; Ruedi Aebersold; Eugene Kolker
Differential stable isotope labeling of peptides for quantitation and de novo sequence derivation.
Rapid communications in mass spectrometry : RCM 2001;15(14):1214-21.