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Penny Beuning

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Escherichia coli

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TOP 3
Jaylene N Ollivierre; Jacquelyn L Sikora; Penny J Beuning
Dimer exchange and cleavage specificity of the DNA damage response protein UmuD.
Jason M Walsh; Mary Jo Ondrechen; Ramya Parasuram; Pradyumna R Rajput; Eriks Rozners; Penny J Beuning
Effects of non-catalytic, distal amino acid residues on activity of E. coli DinB (DNA polymerase IV).
Michelle C Silva; Philip Nevin; Erin A Ronayne; Penny J Beuning
Selective disruption of the DNA polymerase III α-β complex by the umuD gene products.

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All Publications

2013: Jaylene N Ollivierre; Jacquelyn L Sikora; Penny J Beuning
Dimer exchange and cleavage specificity of the DNA damage response protein UmuD.
Biochimica et biophysica acta 2013;1834(2):611-20.
2012: Jason M Walsh; Mary Jo Ondrechen; Ramya Parasuram; Pradyumna R Rajput; Eriks Rozners; Penny J Beuning
Effects of non-catalytic, distal amino acid residues on activity of E. coli DinB (DNA polymerase IV).
Environmental and molecular mutagenesis 2012;53(9):766-76.
2012: Michelle C Silva; Philip Nevin; Erin A Ronayne; Penny J Beuning
Selective disruption of the DNA polymerase III α-β complex by the umuD gene products.
Nucleic acids research 2012;40(12):5511-22.
2012: Jason M Walsh; Penny J Beuning
Synthetic nucleotides as probes of DNA polymerase specificity.
Journal of nucleic acids 2012;2012():530963.
2011: Jaylene N Ollivierre; David E Budil; Penny J Beuning
Electron spin labeling reveals the highly dynamic N-terminal arms of the SOS mutagenesis protein UmuD.
Molecular bioSystems 2011;7(12):3183-6.
2011: Srinivas Somarowthu; Heather R Brodkin; J Alejandro D'Aquino; Mary Jo Ondrechen; Dagmar Ringe; Penny J Beuning
A tale of two isomerases: compact versus extended active sites in ketosteroid isomerase and phosphoglucose isomerase.
Biochemistry 2011;50(43):9283-95.
2011: Lisa A Hawver; Caitlin A Gillooly; Penny J Beuning
Characterization of Escherichia coli UmuC active-site loops identifies variants that confer UV hypersensitivity.
Journal of bacteriology 2011;193(19):5400-11.
2011: Jing Fang; John R Engen; Penny J Beuning
Escherichia coli processivity clamp β from DNA polymerase III is dynamic in solution.
Biochemistry 2011;50(26):5958-68.
2011: Gye Won Han; Jaeju Ko; Scott A Lesley; Mitchell D Miller; Penny J Beuning; Hsiu-Ju Chiu; Ashley M Deacon; Marc C Deller; Marc-André Elsliger; Carol L Farr; Adam Godzik; Jana Sefcikova; Srinivas Somarowthu; Ian A Wilson; Qingping Xu; Mary Jo Ondrechen
Crystal structure of a metal-dependent phosphoesterase (YP_910028.1) from Bifidobacterium adolescentis: Computational prediction and experimental validation of phosphoesterase activity.
Proteins 2011;79(7):2146-60.
2011: Jason M Walsh; Imenne Bouamaied; Tom Brown; L Marcus Wilhelmsson; Penny J Beuning
Discrimination against the cytosine analog tC by Escherichia coli DNA polymerase IV DinB.
Journal of molecular biology 2011;409(2):89-100.
2011: Jaylene N Ollivierre; Jacquelyn L Sikora; Penny J Beuning
The dimeric SOS mutagenesis protein UmuD is active as a monomer.
The Journal of biological chemistry 2011;286(5):3607-17.
2011: Jason M Walsh; Lisa A Hawver; Penny J Beuning
Escherichia coli Y family DNA polymerases.
Frontiers in bioscience : a journal and virtual library 2011;16():3164-82.
2010: Jing Fang; Kasper D Rand; Michelle C Silva; Thomas E Wales; John R Engen; Penny J Beuning
Conformational dynamics of the Escherichia coli DNA polymerase manager proteins UmuD and UmuD'.
Journal of molecular biology 2010;398(1):40-53.
2010: Jaylene N Ollivierre; Jing Fang; Penny J Beuning
The Roles of UmuD in Regulating Mutagenesis.
Journal of nucleic acids 2010;2010():.
2009: Penny J Beuning; Sarah Chan; Lauren S Waters; Haripriya Addepalli; Jaylene N Ollivierre; Graham C Walker
Characterization of novel alleles of the Escherichia coli umuDC genes identifies additional interaction sites of UmuC with the beta clamp.
Journal of bacteriology 2009;191(19):5910-20.
2009: Sharotka M Simon; Lauren S Waters; Daniel F Jarosz; Penny J Beuning
Song: SOS (To the Tune of ABBA's "SOS").
Biochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology 2009;37(5):316.
2009: Brenna W Shurtleff; Jaylene N Ollivierre; Mohammad Tehrani; Graham C Walker; Penny J Beuning
Steric gate variants of UmuC confer UV hypersensitivity on Escherichia coli.
Journal of bacteriology 2009;191(15):4815-23.
2008: Micah J McCauley; Leila Shokri; Jana Sefcikova; Ceslovas Venclovas; Penny J Beuning; Mark C Williams
Distinct double- and single-stranded DNA binding of E. coli replicative DNA polymerase III alpha subunit.
ACS chemical biology 2008;3(9):577-87.
2007: Daniel F Jarosz; Penny J Beuning; Susan E Cohen; Graham C Walker
Y-family DNA polymerases in Escherichia coli.
Trends in microbiology 2007;15(2):70-7.
2006: Margareta Cruceanu; Andrew G Stephen; Penny J Beuning; Robert J Gorelick; Robert J Fisher; Mark C Williams
Single DNA molecule stretching measures the activity of chemicals that target the HIV-1 nucleocapsid protein.
Analytical biochemistry 2006;358(2):159-70.
2006: Penny J Beuning; Sharotka M Simon; Adam Zemla; Daniel Barsky; Graham C Walker
A non-cleavable UmuD variant that acts as a UmuD' mimic.
The Journal of biological chemistry 2006;281(14):9633-40.
2006: Penny J Beuning; Sharotka M Simon; Veronica G Godoy; Daniel F Jarosz; Graham C Walker
Characterization of Escherichia coli translesion synthesis polymerases and their accessory factors.
Methods in enzymology 2006;408():318-40.
2006: Penny J Beuning; Dorota Sawicka; Daniel Barsky; Graham C Walker
Two processivity clamp interactions differentially alter the dual activities of UmuC.
Molecular microbiology 2006;59(2):460-74.
2003: Fai-Chu Wong; Penny J Beuning; Carmen Silvers; Karin Musier-Forsyth
An isolated class II aminoacyl-tRNA synthetase insertion domain is functional in amino acid editing.
The Journal of biological chemistry 2003;278(52):52857-64.
2002: Fai-Chu Wong; Penny J Beuning; Maria C Nagan; Kiyotaka Shiba; Karin Musier-Forsyth
Functional role of the prokaryotic proline-tRNA synthetase insertion domain in amino acid editing.
Biochemistry 2002;41(22):7108-15.
2002: Penny J Beuning; Maria C Nagan; Christopher J Cramer; Karin Musier-Forsyth; Josep-Lluis Gelpí; Donald Bashford
Efficient aminoacylation of the tRNA(Ala) acceptor stem: dependence on the 2:71 base pair.
RNA (New York, N.Y.) 2002;8(5):659-70.
2002: Richard S A Lipman; Penny J Beuning; Karin Musier-Forsyth; Ya-Ming Hou
Amino acid activation of a dual-specificity tRNA synthetase is independent of tRNA.
Journal of molecular biology 2002;316(3):421-7.
2001: Penny J Beuning; Karin Musier-Forsyth
Species-specific differences in amino acid editing by class II prolyl-tRNA synthetase.
The Journal of biological chemistry 2001;276(33):30779-85.
2000: Penny J Beuning; Karin Musier-Forsyth
Hydrolytic editing by a class II aminoacyl-tRNA synthetase.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(16):8916-20.
2000: Maria C Nagan; Penny J Beuning; Karin Musier-Forsyth; Christopher J Cramer
Importance of discriminator base stacking interactions: molecular dynamics analysis of A73 microhelix(Ala) variants.
Nucleic acids research 2000;28(13):2527-34.
2000: K Musier-Forsyth; Penny J Beuning
Role of zinc ion in translational accuracy becomes crystal clear.
Nature structural biology 2000;7(6):435-6.
1999: A E Fischer; Penny J Beuning; Karin Musier-Forsyth
Identification of discriminator base atomic groups that modulate the alanine aminoacylation reaction.
The Journal of biological chemistry 1999;274(52):37093-6.
1999: Penny J Beuning; MR Tessmer; C G Baumann; DA Kallick; Karin Musier-Forsyth
Sequence-dependent conformational differences of small RNAs revealed by native gel electrophoresis.
Analytical biochemistry 1999;273(2):284-90.
1999: Penny J Beuning; Karin Musier-Forsyth
Transfer RNA recognition by aminoacyl-tRNA synthetases.
Biopolymers 1999;52(1):1-28.
1997: Penny J Beuning; F Yang; P Schimmel; Karin Musier-Forsyth
Specific atomic groups and RNA helix geometry in acceptor stem recognition by a tRNA synthetase.
Proceedings of the National Academy of Sciences of the United States of America 1997;94(19):10150-4.