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Christopher Quince

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Environmental Microbiology

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Publications

TOP 3
Christopher Quince; Joseph Rafter; Nicholas J Talley; Lars Engstrand; Dario Greco; Elin E Lundin; Lars Agreus; Anders F Andersson; Anna N Andreasson; Mauro D'Amato
The impact of Crohn's disease genes on healthy human gut microbiota: a pilot study.
Nicholas J Loman; Martin Aepfelbacher; Jason R Betley; Jacqueline Z-M Chan; Martin Christner; Chrystala Constantinidou; Joshua Quick; Christopher Quince; Holger Rohde; Geoffrey P Smith; Jacqueline C Weir; Mark J Pallen
A culture-independent sequence-based metagenomics approach to the investigation of an outbreak of Shiga-toxigenic Escherichia coli O104:H4.
Ramiro Logares; Alexander J Nederbragt; Christopher Quince; Thomas H A Haverkamp; Surendra Kumar; Anders Lanzen; Håvard Kauserud
Environmental microbiology through the lens of high-throughput DNA sequencing: synopsis of current platforms and bioinformatics approaches.

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All Publications

2013: Christopher Quince; Joseph Rafter; Nicholas J Talley; Lars Engstrand; Dario Greco; Elin E Lundin; Lars Agreus; Anders F Andersson; Anna N Andreasson; Mauro D'Amato
The impact of Crohn's disease genes on healthy human gut microbiota: a pilot study.
Gut 2013;62(6):952-4.
2013: Nicholas J Loman; Martin Aepfelbacher; Jason R Betley; Jacqueline Z-M Chan; Martin Christner; Chrystala Constantinidou; Joshua Quick; Christopher Quince; Holger Rohde; Geoffrey P Smith; Jacqueline C Weir; Mark J Pallen
A culture-independent sequence-based metagenomics approach to the investigation of an outbreak of Shiga-toxigenic Escherichia coli O104:H4.
JAMA : the journal of the American Medical Association 2013;309(14):1502-10.
2012: Ramiro Logares; Alexander J Nederbragt; Christopher Quince; Thomas H A Haverkamp; Surendra Kumar; Anders Lanzen; Håvard Kauserud
Environmental microbiology through the lens of high-throughput DNA sequencing: synopsis of current platforms and bioinformatics approaches.
Journal of microbiological methods 2012;91(1):106-13.
2012: V G Fonseca; D Lallias; B Nichols; D M Power; Christopher Quince; Gary R Carvalho; S Creer
Sample richness and genetic diversity as drivers of chimera formation in nSSU metagenetic analyses.
Nucleic acids research 2012;40(9):e66.
2012: Angélique Gobet; Susan M Huse; Christopher Quince; Simone I Böer; Antje Boetius; Mitchell L Sogin; Justus E E van Beusekom; Alban Ramette
Diversity and dynamics of rare and of resident bacterial populations in coastal sands.
The ISME journal 2012;6(3):542-53.
2012: For Yue Tso; Damien Tully; Sandra Gonzalez; On Ho; Shiu-Lok Hu; Patricia Polacino; Christopher Quince; Ruth Ruprecht; Charles Wood
Dynamics of envelope evolution in clade C SHIV-infected pig-tailed macaques during disease progression analyzed by ultra-deep pyrosequencing.
PloS one 2012;7(3):e32827.
2012: Michiel Vos; Mattias de Hollander; Agata S Pijl; Christopher Quince; George A Kowalchuk
A comparison of rpoB and 16S rRNA as markers in pyrosequencing studies of bacterial diversity.
PloS one 2012;7(2):e30600.
2012: Ian Holmes; Keith Harris; Christopher Quince
Dirichlet multinomial mixtures: generative models for microbial metagenomics.
PloS one 2012;7(2):e30126.
2011: Robert C Edgar; Brian J Haas; Jose C Clemente; Christopher Quince; Rob Knight
UCHIME improves sensitivity and speed of chimera detection.
Bioinformatics (Oxford, England) 2011;27(16):2194-200.
2011: R Henrik Nilsson; Kessy Abarenkov; Tom Bruns; Tor Carlsen; Rasmus Kjøller; Urmas Kõljalg; Karl-Henrik Larsson; Björn D Lindahl; Taina Pennanen; Christopher Quince; Jan Stenlid; Leho Tedersoo; Håvard Kauserud
Towards standardization of the description and publication of next-generation sequencing datasets of fungal communities.
The New phytologist 2011;191(2):314-8.
2011: Martin Hartmann; Charles G Howes; Per Johansson; William W Mohn; Christopher Quince; Salome Schneider; Parag A Vaishampayan; Vilmar Veldre; Anthony C Yannarell; Kessy Abarenkov; K Johanna Björkroth; Steven J Hallam; R Henrik Nilsson
V-REVCOMP: automated high-throughput detection of reverse complementary 16S rRNA gene sequences in large environmental and taxonomic datasets.
FEMS microbiology letters 2011;319(2):140-5.
2011: Christopher Quince; Anders Lanzen; Russell J Davenport; Peter J Turnbaugh
Removing noise from pyrosequenced amplicons.
BMC bioinformatics 2011;12():38.
2010: Angélique Gobet; Christopher Quince; Alban Ramette
Multivariate Cutoff Level Analysis (MultiCoLA) of large community data sets.
Nucleic acids research 2010;38(15):e155.
2010: Todd L Parsons; Christopher Quince; Joshua B Plotkin
Some consequences of demographic stochasticity in population genetics.
Genetics 2010;185(4):1345-54.
2010: Jack A Gilbert; Folker Meyer; Dion Antonopoulos; Pavan Balaji; C Titus Brown; Christopher T Brown; Narayan Desai; Jonathan Eisen; Dirk Evers; Dawn Field; Wu Feng; Daniel Huson; Janet Jansson; Rob Knight; James Knight; Eugene Kolker; Kostas Konstantindis; Joel Kostka; Nikos Kyrpides; Rachel Mackelprang; Alice McHardy; Christopher Quince; Jeroen Raes; Alexander Sczyrba; Ashley Shade; Rick Stevens
Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project.
Standards in genomic sciences 2010;3(3):243-8.
2009: Christopher Quince; Anders Lanzen; Thomas P Curtis; Russell J Davenport; Neil Hall; Ian M Head; L Fiona Read; William T Sloan
Accurate determination of microbial diversity from 454 pyrosequencing data.
Nature methods 2009;6(9):639-41.
2008: Todd L Parsons; Christopher Quince; Joshua B Plotkin
Absorption and fixation times for neutral and quasi-neutral populations with density dependence.
Theoretical population biology 2008;74(4):302-10.
2008: Christopher Quince; Thomas P Curtis; William T Sloan
The rational exploration of microbial diversity.
The ISME journal 2008;2(10):997-1006.
2008: Christopher Quince; Peter A Abrams; Brian J Shuter; Nigel P Lester
Biphasic growth in fish I: theoretical foundations.
Journal of theoretical biology 2008;254(2):197-206.
2008: Christopher Quince; Brian J Shuter; Peter A Abrams; Nigel P Lester
Biphasic growth in fish II: empirical assessment.
Journal of theoretical biology 2008;254(2):207-14.
2007: Todd L Parsons; Christopher Quince
Fixation in haploid populations exhibiting density dependence II: the quasi-neutral case.
Theoretical population biology 2007;72(4):468-79.
2007: Todd L Parsons; Christopher Quince
Fixation in haploid populations exhibiting density dependence I: The non-neutral case.
Theoretical population biology 2007;72(1):121-35.
2005: Peter A Abrams; Christopher Quince
The impact of mortality on predator population size and stability in systems with stage-structured prey.
Theoretical population biology 2005;68(4):253-66.
2004: Barbara Drossel; Alan J McKane; Christopher Quince
The impact of nonlinear functional responses on the long-term evolution of food web structure.
Journal of theoretical biology 2004;229(4):539-48.