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Rudolf Raff

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Kirk S Zigler; Maria Byrne; HA Lessios; Elizabeth C Raff; Rudolf A Raff
Natural hybridization in the sea urchin genus Pseudoboletia between species without apparent barriers to gamete recognition.
John A Cunningham; J V Bailey; Stefan Bengtson; F Marone; E C Raff; Rudolf A Raff; Marco Stampanoni; C-W Thomas; F R Turner; Philip C J Donoghue
Experimental taphonomy of giant sulphur bacteria: implications for the interpretation of the embryo-like Ediacaran Doushantuo fossils.
Sharon B Minsuk; F Rudolf Turner; Mary E Andrews; Rudolf A Raff
Axial patterning of the pentaradial adult echinoderm body plan.

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All Publications

2012: Kirk S Zigler; Maria Byrne; HA Lessios; Elizabeth C Raff; Rudolf A Raff
Natural hybridization in the sea urchin genus Pseudoboletia between species without apparent barriers to gamete recognition.
Evolution; international journal of organic evolution 2012;66(6):1695-708.
2012: John A Cunningham; J V Bailey; Stefan Bengtson; F Marone; E C Raff; Rudolf A Raff; Marco Stampanoni; C-W Thomas; F R Turner; Philip C J Donoghue
Experimental taphonomy of giant sulphur bacteria: implications for the interpretation of the embryo-like Ediacaran Doushantuo fossils.
Proceedings. Biological sciences / The Royal Society 2012;279(1734):1857-64.
2009: Sharon B Minsuk; F Rudolf Turner; Mary E Andrews; Rudolf A Raff
Axial patterning of the pentaradial adult echinoderm body plan.
Development genes and evolution 2009;219(2):89-101.
2009: Rudolf A Raff; Margaret Snoke Smith
Chapter 7. Axis formation and the rapid evolutionary transformation of larval form.
Current topics in developmental biology 2009;86():163-90.
2008: Margaret S Smith; F Rudolf Turner; Rudolf A Raff
Nodal expression and heterochrony in the evolution of dorsal-ventral and left-right axes formation in the direct-developing sea urchin Heliocidaris erythrogramma.
Journal of experimental zoology. Part B, Molecular and developmental evolution 2008;310(8):609-22.
2008: Elizabeth C Raff; Kaila L Schollaert; David E Nelson; Philip C J Donoghue; Ceri-Wyn Thomas; F Rudolf Turner; Barry D Stein; Xiping Dong; Stefan Bengtson; Therese Huldtgren; Marco Stampanoni; Yin Chongyu; Rudolf A Raff
Embryo fossilization is a biological process mediated by microbial biofilms.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(49):19360-5.
2008: Neil J Gostling; Ceri-Wyn Thomas; Jenny M Greenwood; Xiping Dong; Stefan Bengtson; Elizabeth C Raff; Rudolf A Raff; Bernard M Degnan; Marco Stampanoni; Philip C J Donoghue
Deciphering the fossil record of early bilaterian embryonic development in light of experimental taphonomy.
Evolution & development 2008;10(3):339-49.
2008: Rudolf A Raff
Origins of the other metazoan body plans: the evolution of larval forms.
Philosophical transactions of the Royal Society of London. Series B, Biological sciences 2008;363(1496):1473-9.
2008: Alan C Love; Abigail E Lee; Mary E Andrews; Rudolf A Raff
Co-option and dissociation in larval origins and evolution: the sea urchin larval gut.
Evolution & development 2008;10(1):74-88.
2007: Rudolf A Raff
Written in stone: fossils, genes and evo-devo.
Nature reviews. Genetics 2007;8(12):911-20.
2007: Margaret Snoke Smith; Kirk S Zigler; Rudolf A Raff
Evolution of direct-developing larvae: selection vs loss.
BioEssays : news and reviews in molecular, cellular and developmental biology 2007;29(6):566-71.
2007: Rudolf A Raff; Elizabeth C Raff
Tinkering: new embryos from old--rapidly and cheaply.
Novartis Foundation symposium 2007;284():35-45; discussion 45-54, 110-5.
2007: Alan C Love; Mary E Andrews; Rudolf A Raff
Gene expression patterns in a novel animal appendage: the sea urchin pluteus arm.
Evolution & development 2007;9(1):51-68.
2006: James W Hagadorn; Shuhai Xiao; Philip C J Donoghue; Stefan Bengtson; Neil J Gostling; Maria Pawlowska; Elizabeth C Raff; Rudolf A Raff; F Rudolf Turner; Yin Chongyu; Chuanming Zhou; Xunlai Yuan; Matthew B McFeely; Marco Stampanoni; Kenneth H Nealson
Cellular and subcellular structure of neoproterozoic animal embryos.
Science (New York, N.Y.) 2006;314(5797):291-4.
2006: Rudolf A Raff; M Byrne
The active evolutionary lives of echinoderm larvae.
Heredity 2006;97(3):244-52.
2006: Elizabeth C Raff; Jeffrey T Villinski; F Rudolf Turner; Philip C J Donoghue; Rudolf A Raff
Experimental taphonomy shows the feasibility of fossil embryos.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(15):5846-51.
2006: Alan C Love; Rudolf A Raff
Larval ectoderm, organizational homology, and the origins of evolutionary novelty.
Journal of experimental zoology. Part B, Molecular and developmental evolution 2006;306(1):18-34.
2005: Keen A Wilson; Mary E Andrews; F Rudolf Turner; Rudolf A Raff
Major regulatory factors in the evolution of development: the roles of goosecoid and Msx in the evolution of the direct-developing sea urchin Heliocidaris erythrogramma.
Evolution & development 2005;7(5):416-28.
2005: Keen A Wilson; Mary E Andrews; Rudolf A Raff
Dissociation of expression patterns of homeodomain transcription factors in the evolution of developmental mode in the sea urchins Heliocidaris tuberculata and H. erythrogramma.
Evolution & development 2005;7(5):401-15.
2005: Sharon B Minsuk; Mary E Andrews; Rudolf A Raff
From larval bodies to adult body plans: patterning the development of the presumptive adult ectoderm in the sea urchin larva.
Development genes and evolution 2005;215(8):383-92.
2005: Sharon B Minsuk; Rudolf A Raff
Co-option of an oral-aboral patterning mechanism to control left-right differentiation: the direct-developing sea urchin Heliocidaris erythrogramma is sinistralized, not ventralized, by NiCl2.
Evolution & development 2005;7(4):289-300.
2004: Rudolf A Raff; Alan C Love
Kowalevsky, comparative evolutionary embryology, and the intellectual lineage of evo-devo.
Journal of experimental zoology. Part B, Molecular and developmental evolution 2004;302(1):19-34.
2003: Na Zhou; Keen A Wilson; Mary E Andrews; Jeffrey S Kauffman; Rudolf A Raff
Evolution of OTP-independent larval skeleton patterning in the direct-developing sea urchin, Heliocidaris erythrogramma.
Journal of experimental zoology. Part B, Molecular and developmental evolution 2003;300(1):58-71.
2003: Jeffrey S Kauffman; Rudolf A Raff
Patterning mechanisms in the evolution of derived developmental life histories: the role of Wnt signaling in axis formation of the direct-developing sea urchin Heliocidaris erythrogramma.
Development genes and evolution 2003;213(12):612-24.
2003: Kirk S Zigler; Elizabeth C Raff; Ellen M Popodi; Rudolf A Raff; HA Lessios
Adaptive evolution of bindin in the genus Heliocidaris is correlated with the shift to direct development.
Evolution; international journal of organic evolution 2003;57(10):2293-302.
2003: Elizabeth C Raff; Ellen M Popodi; Jeffrey S Kauffman; Belinda J Sly; F Rudolf Turner; Valerie B Morris; Rudolf A Raff
Regulatory punctuated equilibrium and convergence in the evolution of developmental pathways in direct-developing sea urchins.
Evolution & development 2003;5(5):478-93.
2003: Alan C Love; Rudolf A Raff
Knowing your ancestors: themes in the history of evo-devo.
Evolution & development 2003;5(4):327-30.
2003: Jeffrey S Kauffman; Anna Zinovyeva; Kasumi Yagi; Kazuhiro W Makabe; Rudolf A Raff
Neural expression of the Huntington's disease gene as a chordate evolutionary novelty.
Journal of experimental zoology. Part B, Molecular and developmental evolution 2003;297(1):57-64.
2003: Mark G Nielsen; Ellen M Popodi; Sharon B Minsuk; Rudolf A Raff
Evolutionary convergence in Otx expression in the pentameral adult rudiment in direct-developing sea urchins.
Development genes and evolution 2003;213(2):73-82.
2003: Belinda J Sly; Margaret S Snoke; Rudolf A Raff
Who came first--larvae or adults? origins of bilaterian metazoan larvae.
The International journal of developmental biology 2003;47(7-8):623-32.
2002: Jeffrey T Villinski; Jennifer C Villinski; Maria Byrne; Rudolf A Raff
Convergent maternal provisioning and life-history evolution in echinoderms.
Evolution; international journal of organic evolution 2002;56(9):1764-75.
2002: Sharon B Minsuk; Rudolf A Raff
Pattern formation in a pentameral animal: induction of early adult rudiment development in sea urchins.
Developmental biology 2002;247(2):335-50.
2002: Belinda J Sly; Jill C Hazel; Ellen M Popodi; Rudolf A Raff
Patterns of gene expression in the developing adult sea urchin central nervous system reveal multiple domains and deep-seated neural pentamery.
Evolution & development 2002;4(3):189-204.
2001: Ellen M Popodi; Rudolf A Raff
Hox genes in a pentameral animal.
BioEssays : news and reviews in molecular, cellular and developmental biology 2001;23(3):211-4.
2001: M J Ferkowicz; Rudolf A Raff
Wnt gene expression in sea urchin development: heterochronies associated with the evolution of developmental mode.
Evolution & development 2001;3(1):24-33.
2000: Rudolf A Raff
Evo-devo: the evolution of a new discipline.
Nature reviews. Genetics 2000;1(1):74-9.
2000: Elizabeth C Raff; Rudolf A Raff
Dissociability, modularity, evolvability.
Evolution & development 2000;2(5):235-7.
2000: Mark G Nielsen; Keen A Wilson; Elizabeth C Raff; Rudolf A Raff
Novel gene expression patterns in hybrid embryos between species with different modes of development.
Evolution & development 2000;2(3):133-44.
2000: Rudolf A Raff; Belinda J Sly
Modularity and dissociation in the evolution of gene expression territories in development.
Evolution & development 2000;2(2):102-13.
1999: Eric S Haag; Belinda J Sly; Mary E Andrews; Rudolf A Raff
Apextrin, a novel extracellular protein associated with larval ectoderm evolution in Heliocidaris erythrogramma.
Developmental biology 1999;211(1):77-87.
1999: Maria Byrne; Jeffrey T Villinski; Paula Cisternas; R K Siegel; Ellen M Popodi; Rudolf A Raff
Maternal factors and the evolution of developmental mode: evolution of oogenesis in Heliocidaris erythrogramma.
Development genes and evolution 1999;209(5):275-83.
1999: Elizabeth C Raff; Ellen M Popodi; Belinda J Sly; F Rudolf Turner; Jeffrey T Villinski; Rudolf A Raff
A novel ontogenetic pathway in hybrid embryos between species with different modes of development.
Development (Cambridge, England) 1999;126(9):1937-45.
1999: Rudolf A Raff
Larval homologies and radical evolutionary changes in early development.
Novartis Foundation symposium 1999;222():110-21; discussion 121-4.
1998: M J Ferkowicz; M C Stander; Rudolf A Raff
Phylogenetic relationships and developmental expression of three sea urchin Wnt genes.
Molecular biology and evolution 1998;15(7):809-19.
1998: Eric S Haag; Rudolf A Raff
Isolation and characterization of three mRNAs enriched in embryos of the direct-developing sea urchin Heliocidaris erythrogramma: evolution of larval ectoderm.
Development genes and evolution 1998;208(4):188-204.
1998: Jessica Kissinger; Rudolf A Raff
Evolutionary changes in sites and timing of actin gene expression in embryos of the direct- and indirect-developing sea urchins, Heliocidaris erythrogramma and H. tuberculata.
Development genes and evolution 1998;208(2):82-93.
1997: Jessica Kissinger; J H Hahn; Rudolf A Raff
Rapid evolution in a conserved gene family. Evolution of the actin gene family in the sea urchin genus Heliocidaris and related genera.
Molecular biology and evolution 1997;14(6):654-65.
1997: Kristin M Klueg; M A Harkey; Rudolf A Raff
Mechanisms of evolutionary changes in timing, spatial expression, and mRNA processing in the msp130 gene in a direct-developing sea urchin, Heliocidaris erythrogramma.
Developmental biology 1997;182(1):121-33.
1996: E Popodi; Jessica Kissinger; M E Andrews; Rudolf A Raff
Sea urchin Hox genes: insights into the ancestral Hox cluster.
Molecular biology and evolution 1996;13(8):1078-86.
1995: E Popodi; M E Andrews; Rudolf A Raff
A sea urchin homologue of ceh-19, an unusual homeobox-containing gene from a nematode.
Gene 1995;164(2):367-8.
1995: B W Bisgrove; M E Andrews; Rudolf A Raff
Evolution of the fibropellin gene family and patterns of fibropellin gene expression in sea urchin phylogeny.
Journal of molecular evolution 1995;41(1):34-45.
1995: M A Harkey; Kristin M Klueg; P Sheppard; Rudolf A Raff
Structure, expression, and extracellular targeting of PM27, a skeletal protein associated specifically with growth of the sea urchin larval spicule.
Developmental biology 1995;168(2):549-66.
1995: J H Hahn; Jessica Kissinger; Rudolf A Raff
Structure and evolution of CyI cytoplasmic actin-encoding genes in the indirect- and direct-developing sea urchins Heliocidaris tuberculata and Heliocidaris erythrogramma.
Gene 1995;153(2):219-24.
1994: C R Marshall; Elizabeth C Raff; Rudolf A Raff
Dollo's law and the death and resurrection of genes.
Proceedings of the National Academy of Sciences of the United States of America 1994;91(25):12283-7.
1994: J M Turbeville; J R Schulz; Rudolf A Raff
Deuterostome phylogeny and the sister group of the chordates: evidence from molecules and morphology.
Molecular biology and evolution 1994;11(4):648-55.
1993: Venu Raman; M E Andrews; M A Harkey; Rudolf A Raff
Protein-DNA interactions at putative regulatory regions of two coordinately expressed genes, msp130 and PM27, during skeletogenesis in sea urchin embryos.
The International journal of developmental biology 1993;37(4):499-507.
1993: B W Bisgrove; Rudolf A Raff
The SpEGF III gene encodes a member of the fibropellins: EGF repeat-containing proteins that form the apical lamina of the sea urchin embryo.
Developmental biology 1993;157(2):526-38.
1992: Joseph Jonathan Henry; Kristin M Klueg; Rudolf A Raff
Evolutionary dissociation between cleavage, cell lineage and embryonic axes in sea urchin embryos.
Development (Cambridge, England) 1992;114(4):931-8.
1992: Rudolf A Raff
Direct-developing sea urchins and the evolutionary reorganization of early development.
BioEssays : news and reviews in molecular, cellular and developmental biology 1992;14(4):211-8.
1992: J M Turbeville; K G Field; Rudolf A Raff
Phylogenetic position of phylum Nemertini, inferred from 18S rRNA sequences: molecular data as a test of morphological character homology.
Molecular biology and evolution 1992;9(2):235-49.
1992: Rudolf A Raff
Evolution of developmental decisions and morphogenesis: the view from two camps.
Development (Cambridge, England). Supplement 1992;():15-22.
1991: J M Turbeville; D M Pfeifer; K G Field; Rudolf A Raff
The phylogenetic status of arthropods, as inferred from 18S rRNA sequences.
Molecular biology and evolution 1991;8(5):669-86.
1991: B W Bisgrove; M E Andrews; Rudolf A Raff
Fibropellins, products of an EGF repeat-containing gene, form a unique extracellular matrix structure that surrounds the sea urchin embryo.
Developmental biology 1991;146(1):89-99.
1990: Joseph Jonathan Henry; G A Wray; Rudolf A Raff
The dorsoventral axis is specified prior to first cleavage in the direct developing sea urchin Heliocidaris erythrogramma.
Development (Cambridge, England) 1990;110(3):875-84.
1990: Joseph Jonathan Henry; Rudolf A Raff
Evolutionary change in the process of dorsoventral axis determination in the direct developing sea urchin, Heliocidaris erythrogramma.
Developmental biology 1990;141(1):55-69.
1990: G A Wray; Rudolf A Raff
Novel origins of lineage founder cells in the direct-developing sea urchin Heliocidaris erythrogramma.
Developmental biology 1990;141(1):41-54.
1990: Rudolf A Raff
A sea urchin gene containing multiple EGF repeats is similar to vertebrate EGF-containing genes.
Molecular reproduction and development 1990;27(1):66-72.
1990: L B Scott; W J Lennarz; Rudolf A Raff; G A Wray
The "lecithotrophic" sea urchin Heliocidaris erythrogramma lacks typical yolk platelets and yolk glycoproteins.
Developmental biology 1990;138(1):188-93.
1990: B A Parr; A L Parks; Rudolf A Raff
Promoter structure and protein sequence of msp130, a lipid-anchored sea urchin glycoprotein.
The Journal of biological chemistry 1990;265(3):1408-13.
1989: Joseph Jonathan Henry; S Amemiya; G A Wray; Rudolf A Raff
Early inductive interactions are involved in restricting cell fates of mesomeres in sea urchin embryos.
Developmental biology 1989;136(1):140-53.
1989: M G Delgadillo-Reynoso; D R Rollo; D A Hursh; Rudolf A Raff
Structural analysis of the uEGF gene in the sea urchin strongylocentrotus purpuratus reveals more similarity to vertebrate than to invertebrate genes with EGF-like repeats.
Journal of molecular evolution 1989;29(4):314-27.
1989: G A Wray; Rudolf A Raff
Evolutionary modification of cell lineage in the direct-developing sea urchin Heliocidaris erythrogramma.
Developmental biology 1989;132(2):458-70.
1988: J A Anstrom; Rudolf A Raff
Sea urchin primary mesenchyme cells: relation of cell polarity to the epithelial-mesenchymal transformation.
Developmental biology 1988;130(1):57-66.
1988: K G Field; Gary J Olsen; D J Lane; Stephen J Giovannoni; M T Ghiselin; Elizabeth C Raff; N R Pace; Rudolf A Raff
Molecular phylogeny of the animal kingdom.
Science (New York, N.Y.) 1988;239(4841 Pt 1):748-53.
1988: J A Anstrom; J E Chin; D S Leaf; A L Parks; Rudolf A Raff
Immunocytochemical evidence suggesting heterogeneity in the population of sea urchin egg cortical granules.
Developmental biology 1988;125(1):1-7.
1987: A B Shyu; T Blumenthal; Rudolf A Raff
A single gene encoding vitellogenin in the sea urchin Strongylocentrotus purpuratus: sequence at the 5' end.
Nucleic acids research 1987;15(24):10405-17.
1987: J A Anstrom; J E Chin; D S Leaf; A L Parks; Rudolf A Raff
Localization and expression of msp130, a primary mesenchyme lineage-specific cell surface protein in the sea urchin embryo.
Development (Cambridge, England) 1987;101(2):255-65.
1987: D A Hursh; M E Andrews; Rudolf A Raff
A sea urchin gene encodes a polypeptide homologous to epidermal growth factor.
Science (New York, N.Y.) 1987;237(4821):1487-90.
1987: D S Leaf; J A Anstrom; J E Chin; M A Harkey; R M Showman; Rudolf A Raff
Antibodies to a fusion protein identify a cDNA clone encoding msp130, a primary mesenchyme-specific cell surface protein of the sea urchin embryo.
Developmental biology 1987;121(1):29-40.
1987: R M Showman; D S Leaf; J A Anstrom; Rudolf A Raff
Translation of maternal histone mRNAs in sea urchin embryos: a test of control by 5' cap methylation.
Developmental biology 1987;121(1):284-7.
1986: A B Shyu; Rudolf A Raff; T Blumenthal
Expression of the vitellogenin gene in female and male sea urchin.
Proceedings of the National Academy of Sciences of the United States of America 1986;83(11):3865-9.
1984: Rudolf A Raff; J A Anstrom; C J Huffman; D S Leaf; J H Loo; R M Showman; D E Wells
Origin of a gene regulatory mechanism in the evolution of echinoderms.
Nature 1984;310(5975):312-4.
1984: Lynne M Angerer; D V DeLeon; Robert Clifford Angerer; R M Showman; D E Wells; Rudolf A Raff
Delayed accumulation of maternal histone mRNA during sea urchin oogenesis.
Developmental biology 1984;101(2):477-84.
1982: R M Showman; D E Wells; J Anstrom; D A Hursh; Rudolf A Raff
Message-specific sequestration of maternal histone mRNA in the sea urchin egg.
Proceedings of the National Academy of Sciences of the United States of America 1982;79(19):5944-7.
1981: Rudolf A Raff; J W Brandis; C J Huffman; A L Koch; D E Leister
Protein synthesis as an early response to fertilization of the sea urchin egg: a model.
Developmental biology 1981;86(2):265-71.
1981: J E Loyd; Elizabeth C Raff; Rudolf A Raff
Site and timing of synthesis of tubulin and other proteins during oogenesis in Drosophila melanogaster.
Developmental biology 1981;86(2):272-84.
1981: D E Wells; R M Showman; William H Klein; Rudolf A Raff
Delayed recruitment of maternal histone H3 mRNA in sea urchin embryos.
Nature 1981;292(5822):477-8.