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Alexey Rak
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Network (preview)
18
Pylypenko, Olena
16
Goody, Roger
14
Alexandrov, Kirill
8
Härd, Torleif
7
Garber, Maria
6
Niculae, Anca
5
Waldmann, Herbert
5
Shcherbakov, Dmitry
4
Garber, Maria
4
Sidorovitch, Vadim
4
Thomä, Nicolas
4
Allard, Peter
4
Berglund, Helena
3
Durek, Thomas
3
Brunsveld, Luc
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Geonetwork of Alexey Rak (preview)
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All Publications
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2008: Schwartz Samantha L; Tessema Mathewos; Buranda Tione; Pylypenko Olena; Rak Alexey; Simons Peter C; Surviladze Zurab; Sklar Larry A; Wandinger-Ness Angela
Flow cytometry for real-time measurement of guanine nucleotide binding and exchange by Ras-like GTPases.
Analytical biochemistry 2008;381(2):258-66.
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2008: Schulte Antje; Stolp Bettina; Schönichen André; Pylypenko Olena; Rak Alexey; Fackler Oliver T; Geyer Matthias
The human formin FHOD1 contains a bipartite structure of FH3 and GTPase-binding domains required for activation.
Structure (London, England : 1993) 2008;16(9):1313-23.
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2008: Ignatev Alexander; Kravchenko Sergey; Rak Alexey; Goody Roger S; Pylypenko Olena
A structural model of the GDP dissociation inhibitor rab membrane extraction mechanism.
The Journal of biological chemistry 2008;283(26):18377-84.
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2008: Pylypenko Olena; Ignatev Alexander; Lundmark Richard; Rasmuson Erika; Carlsson Sven R; Rak Alexey
A combinatorial approach to crystallization of PX-BAR unit of the human Sorting Nexin 9.
Journal of structural biology 2008;162(2):356-60.
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2008: Pylypenko Olena; Schönichen André; Ludwig Diana; Ungermann Christian; Goody Roger S; Rak Alexey; Geyer Matthias
Farnesylation of the SNARE protein Ykt6 increases its stability and helical folding.
Journal of molecular biology 2008;377(5):1334-45.
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2007: Schwartz Samantha L; Cao Canhong; Pylypenko Olena; Rak Alexey; Wandinger-Ness Angela
Rab GTPases at a glance.
Journal of cell science 2007;120(Pt 22):3905-10.
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2007: Pylypenko Olena; Lundmark Richard; Rasmuson Erika; Carlsson Sven R; Rak Alexey
The PX-BAR membrane-remodeling unit of sorting nexin 9.
The EMBO journal 2007;26(22):4788-800.
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2007: Schulte Antje; Rak Alexey; Pylypenko Olena; Ludwig Diana; Geyer Matthias
Purification, crystallization and preliminary structural characterization of the N-terminal region of the human formin-homology protein FHOD1.
Acta crystallographica. Section F, Structural biology and crystallization communications 2007;63(Pt 10):878-81.
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2007: Ignatev Alexander; Piatkov Konstantin; Pylypenko Olena; Rak Alexey
A size filtration approach to purify low affinity complexes for crystallization.
Journal of structural biology 2007;159(1):154-7.
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2007: Itzen Aymelt; Rak Alexey; Goody Roger S
Sec2 is a highly efficient exchange factor for the Rab protein Sec4.
Journal of molecular biology 2007;365(5):1359-67.
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2006: Itzen Aymelt; Pylypenko Olena; Goody Roger S; Alexandrov Kirill; Rak Alexey
Nucleotide exchange via local protein unfolding--structure of Rab8 in complex with MSS4.
The EMBO journal 2006;25(7):1445-55.
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2006: Itzen Aymelt; Bleimling Nathalie; Ignatev Alexander; Pylypenko Olena; Rak Alexey
Purification, crystallization and preliminary X-ray crystallographic analysis of mammalian MSS4-Rab8 GTPase protein complex.
Acta crystallographica. Section F, Structural biology and crystallization communications 2006;62(Pt 2):113-6.
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2006: Pylypenko Olena; Rak Alexey; Durek Thomas; Kushnir Susanna; Dursina Beatrice E; Thomae Nicolas H; Constantinescu Alexandru T; Brunsveld Luc; Watzke Anja; Waldmann Herbert; Goody Roger S; Alexandrov Kirill
Structure of doubly prenylated Ypt1:GDI complex and the mechanism of GDI-mediated Rab recycling.
The EMBO journal 2006;25(1):13-23.
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2005: Bergbrede Tim; Pylypenko Olena; Rak Alexey; Alexandrov Kirill
Structure of the extremely slow GTPase Rab6A in the GTP bound form at 1.8A resolution.
Journal of structural biology 2005;152(3):235-8.
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2005: Goody R S; Rak A; Alexandrov K
The structural and mechanistic basis for recycling of Rab proteins between membrane compartments.
Cellular and molecular life sciences : CMLS 2005;62(15):1657-70.
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2005: Watzke Anja; Brunsveld Luc; Durek Thomas; Alexandrov Kirill; Rak Alexey; Goody Roger S; Waldmann Herbert
Chemical biology of protein lipidation: semi-synthesis and structure elucidation of prenylated RabGTPases.
Organic & biomolecular chemistry 2005;3(7):1157-64.
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2004: Rak Alexey; Pylypenko Olena; Niculae Anca; Pyatkov Konstantin; Goody Roger S; Alexandrov Kirill
Structure of the Rab7:REP-1 complex: insights into the mechanism of Rab prenylation and choroideremia disease.
Cell 2004;117(6):749-60.
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2003: Rak Alexey; Pylypenko Olena; Durek Thomas; Watzke Anja; Kushnir Susanna; Brunsveld Lucas; Waldmann Herbert; Goody Roger S; Alexandrov Kirill
Structure of Rab GDP-dissociation inhibitor in complex with prenylated YPT1 GTPase.
Science (New York, N.Y.) 2003;302(5645):646-50.
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2003: Ohman Anders; Rak Alexey; Dontsova Maria; Garber Maria B; Härd Torleif
NMR structure of the ribosomal protein L23 from Thermus thermophilus.
Journal of biomolecular NMR 2003;26(2):131-7.
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2003: Pylypenko Olena; Rak Alexey; Reents Reinhard; Niculae Anca; Sidorovitch Vadim; Cioaca Maria Daniela; Bessolitsyna Ekaterina; Thomä Nicolas H; Waldmann Herbert; Schlichting Ilme; Goody Roger S; Alexandrov Kirill
Structure of Rab escort protein-1 in complex with Rab geranylgeranyltransferase.
Molecular cell 2003;11(2):483-94.
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2003: Rak Alexey; Pylypenko Olena; Niculae Anca; Goody Roger S; Alexandrov Kirill
Crystallization and preliminary X-ray diffraction analysis of monoprenylated Rab7 GTPase in complex with Rab escort protein 1.
Journal of structural biology 2003;141(1):93-5.
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2002: Rak Alexey; Kalinin Alexander; Shcherbakov Dmitry; Bayer Peter
Solution structure of the ribosome-associated cold shock response protein Yfia of Escherichia coli.
Biochemical and biophysical research communications 2002;299(5):710-4.
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2002: Raibaud Sophie; Lebars Isabelle; Guillier Maude; Chiaruttini Claude; Bontems François; Rak Alexey; Garber Maria; Allemand Frédéric; Springer Mathias; Dardel Frédéric
NMR structure of bacterial ribosomal protein l20: implications for ribosome assembly and translational control.
Journal of molecular biology 2002;323(1):143-51.
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2002: Kalinin Alexander; Rak Alexej; Shcherbakov Dmitry; Bayer Peter
1H, 13C and 15N resonance assignments of the ribosome-associated cold shock response protein Yfia of Escherichia coli.
Journal of biomolecular NMR 2002;23(4):335-6.
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2002: Rak Alexey; Niculae Anca; Kalinin Alexandr; Thomä Nicolas H; Sidorovitch Vadim; Goody Roger S; Alexandrov Kirill
In vitro assembly, purification, and crystallization of the rab geranylgeranyl transferase:substrate complex.
Protein expression and purification 2002;25(1):23-30.
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2002: Dursina Beatrice; Thomä Nicolas H; Sidorovitch Vadim; Niculae Anca; Iakovenko Andrei; Rak Alexy; Albert Stefan; Ceacareanu Alice-Corina; Kölling Ralf; Herrmann Christian; Goody Roger S; Alexandrov Kirill
Interaction of yeast Rab geranylgeranyl transferase with its protein and lipid substrates.
Biochemistry 2002;41(21):6805-16.
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2002: Woestenenk Esmeralda A; Gongadze George M; Shcherbakov Dmitry V; Rak Alexey V; Garber Maria B; Härd Torleif; Berglund Helena
The solution structure of ribosomal protein L18 from Thermus thermophilus reveals a conserved RNA-binding fold.
The Biochemical journal 2002;363(Pt 3):553-61.
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2002: Constantinescu Alexandru-Tudor; Rak Alexey; Alexandrov Kirill; Esters Heike; Goody Roger S; Scheidig Axel J
Rab-subfamily-specific regions of Ypt7p are structurally different from other RabGTPases.
Structure (London, England : 1993) 2002;10(4):569-79.
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2001: Rak A; Reents R; Pylypenko O; Niculae A; Sidorovitch V; Thomä N H; Waldmann H; Schlichting I; Goody R S; Alexandrov K
Crystallization and preliminary X-ray diffraction analysis of the Rab escort protein-1 in complex with Rab geranylgeranyltransferase.
Journal of structural biology 2001;136(2):158-61.
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2001: Gongadze G M; Perederina A A; Meshcheriakov V A; Fedorov R V; Moskalenko S E; Rak A V; Serganov A A; Shcherbakov D V; Nikonov S V; Garber M B
[The Thermus thermophilus 5S rRNA-protein complex: Identifications of specific binding sites for proteins L5 and L18 in 5S rRNA]
Molekuliarnaia biologiia 2001;35(4):610-6.
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2000: Rak A; Fedorov R; Alexandrov K; Albert S; Goody R S; Gallwitz D; Scheidig A J
Crystal structure of the GAP domain of Gyp1p: first insights into interaction with Ypt/Rab proteins.
The EMBO journal 2000;19(19):5105-13.
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2000: Allard P; Rak A V; Wimberly B T; Clemons W M; Kalinin A; Helgstrand M; Garber M B; Ramakrishnan V; Härd T
Another piece of the ribosome: solution structure of S16 and its location in the 30S subunit.
Structure (London, England : 1993) 2000;8(8):875-82.
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2000: Woestenenk E A; Allard P; Gongadze G M; Moskalenko S E; Shcherbakov D V; Rak A V; Garber M B; Härd T; Berglund H
Letter to the editor: assignment and secondary structure identification of the ribosomal protein L18 from Thermus thermophilus.
Journal of biomolecular NMR 2000;17(3):273-4.
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2000: Härd T; Rak A; Allard P; Kloo L; Garber M
The solution structure of ribosomal protein L36 from Thermus thermophilus reveals a zinc-ribbon-like fold.
Journal of molecular biology 2000;296(1):169-80.
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1999: Helgstrand M; Rak A V; Allard P; Davydova N; Garber M B; Härd T
Solution structure of the ribosomal protein S19 from Thermus thermophilus.
Journal of molecular biology 1999;292(5):1071-81.
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1997: Davydova N L; Rak A V; Gryaznova O I; Liljas A; Jonsson B H; Berglund H; Härd T; Garber M B
Preliminary NMR studies of Thermus thermophilus ribosomal protein S19 overproduced in Escherichia coli.
FEBS letters 1997;415(2):155-9.
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1997: Serganov A; Rak A; Garber M; Reinbolt J; Ehresmann B; Ehresmann C; Grunberg-Manago M; Portier C
Ribosomal protein S15 from Thermus thermophilus--cloning, sequencing, overexpression of the gene and RNA-binding properties of the protein.
European journal of biochemistry / FEBS 1997;246(2):291-300.
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1997: Berglund H; Rak A; Serganov A; Garber M; Härd T
Solution structure of the ribosomal RNA binding protein S15 from Thermus thermophilus.
Nature structural biology 1997;4(1):20-3.
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