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Venki Ramakrishnan

Research Profile

Concepts & Ideas

Chemicals & Drugs

Genes & Molecular Sequences

Amino Acid Sequences

Physiology

Protein Biosynthesis

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Publications

TOP 3
Rebecca M Voorhees; Caroline Köhrer; Debabrata Mandal; Cajetan Neubauer; Uttam L RajBhandary; Venki Ramakrishnan
The structural basis for specific decoding of AUA by isoleucine tRNA on the ribosome.
Maria Selmer; Albert Weixlbaumer; Yong-Gui Gao; Venki Ramakrishnan
Ribosome engineering to promote new crystal forms.
Cajetan Neubauer; Reynald Gillet; Ann C Kelley; Venki Ramakrishnan
Decoding in the absence of a codon by tmRNA and SmpB in the ribosome.

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All Publications

2013: Rebecca M Voorhees; Caroline Köhrer; Debabrata Mandal; Cajetan Neubauer; Uttam L RajBhandary; Venki Ramakrishnan
The structural basis for specific decoding of AUA by isoleucine tRNA on the ribosome.
Nature structural & molecular biology 2013;20(5):641-3.
2012: Maria Selmer; Albert Weixlbaumer; Yong-Gui Gao; Venki Ramakrishnan
Ribosome engineering to promote new crystal forms.
Acta crystallographica. Section D, Biological crystallography 2012;68(Pt 5):578-83.
2012: Cajetan Neubauer; Reynald Gillet; Ann C Kelley; Venki Ramakrishnan
Decoding in the absence of a codon by tmRNA and SmpB in the ribosome.
Science (New York, N.Y.) 2012;335(6074):1366-9.
2011: Hong Jin; Ann C Kelley; Venki Ramakrishnan
Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(38):15798-803.
2011: T Martin Schmeing; Rebecca M Voorhees; Ann C Kelley; Venki Ramakrishnan
How mutations in tRNA distant from the anticodon affect the fidelity of decoding.
Nature structural & molecular biology 2011;18(4):432-6.
2011: Venki Ramakrishnan
Molecular biology. The eukaryotic ribosome.
Science (New York, N.Y.) 2011;331(6018):681-2.
2010: Rebecca M Voorhees; T Martin Schmeing; Ann C Kelley; Venki Ramakrishnan
The mechanism for activation of GTP hydrolysis on the ribosome.
Science (New York, N.Y.) 2010;330(6005):835-8.
2010: C Leong Ng; Kathrin Lang; Nicola A G Meenan; Amit Sharma; Ann C Kelley; Colin Kleanthous; Venki Ramakrishnan
Structural basis for 16S ribosomal RNA cleavage by the cytotoxic domain of colicin E3.
Nature structural & molecular biology 2010;17(10):1241-6.
2010: Hong Jin; Ann C Kelley; David Loakes; Venki Ramakrishnan
Structure of the 70S ribosome bound to release factor 2 and a substrate analog provides insights into catalysis of peptide release.
Proceedings of the National Academy of Sciences of the United States of America 2010;107(19):8593-8.
2009: Cajetan Neubauer; Yong-Gui Gao; Kasper R Andersen; Christine M. Dunham; Ann C Kelley; Jendrik Hentschel; Kenn Gerdes; Venki Ramakrishnan; Ditlev E Brodersen
The structural basis for mRNA recognition and cleavage by the ribosome-dependent endonuclease RelE.
Cell 2009;139(6):1084-95.
2009: T Martin Schmeing; Rebecca M Voorhees; Ann C Kelley; Yong-Gui Gao; Frank Murphy; John R Weir; Venki Ramakrishnan
The crystal structure of the ribosome bound to EF-Tu and aminoacyl-tRNA.
Science (New York, N.Y.) 2009;326(5953):688-94.
2009: Yong-Gui Gao; Maria Selmer; Christine M. Dunham; Albert Weixlbaumer; Ann C Kelley; Venki Ramakrishnan
The structure of the ribosome with elongation factor G trapped in the posttranslocational state.
Science (New York, N.Y.) 2009;326(5953):694-9.
2009: T Martin Schmeing; Venki Ramakrishnan
What recent ribosome structures have revealed about the mechanism of translation.
Nature 2009;461(7268):1234-42.
2009: Rebecca M Voorhees; Albert Weixlbaumer; David Loakes; Ann C Kelley; Venki Ramakrishnan
Insights into substrate stabilization from snapshots of the peptidyl transferase center of the intact 70S ribosome.
Nature structural & molecular biology 2009;16(5):528-33.
2009: Venki Ramakrishnan
The ribosome: some hard facts about its structure and hot air about its evolution.
Cold Spring Harbor symposia on quantitative biology 2009;74():25-33.
2008: Albert Weixlbaumer; Hong Jin; Cajetan Neubauer; Rebecca M Voorhees; Sabine Petry; Ann C Kelley; Venki Ramakrishnan
Insights into translational termination from the structure of RF2 bound to the ribosome.
Science (New York, N.Y.) 2008;322(5903):953-6.
2008: Venki Ramakrishnan
What we have learned from ribosome structures.
Biochemical Society transactions 2008;36(Pt 4):567-74.
2008: Shinya Kurata; Albert Weixlbaumer; Takashi Ohtsuki; Tomomi Shimazaki; Takeshi Wada; Yohei Kirino; Kazuyuki Takai; Kimitsuna Watanabe; Venki Ramakrishnan; Tsutomu Suzuki
Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U.G wobble pairing during decoding.
The Journal of biological chemistry 2008;283(27):18801-11.
2008: Sabine Petry; Albert Weixlbaumer; Venki Ramakrishnan
The termination of translation.
Current opinion in structural biology 2008;18(1):70-7.
2007: Albert Weixlbaumer; Sabine Petry; Christine M. Dunham; Maria Selmer; Ann C Kelley; Venki Ramakrishnan
Crystal structure of the ribosome recycling factor bound to the ribosome.
Nature structural & molecular biology 2007;14(8):733-7.
2007: Albert Weixlbaumer; Frank Murphy; Agnieszka Dziergowska; Andrzej Malkiewicz; Franck A P Vendeix; Paul F Agris; Venki Ramakrishnan
Mechanism for expanding the decoding capacity of transfer RNAs by modification of uridines.
Nature structural & molecular biology 2007;14(6):498-502.
2007: Christine M. Dunham; Maria Selmer; Steven S Phelps; Ann C Kelley; Tsutomu Suzuki; Simpson Joseph; Venki Ramakrishnan
Structures of tRNAs with an expanded anticodon loop in the decoding center of the 30S ribosomal subunit.
RNA (New York, N.Y.) 2007;13(6):817-23.
2007: Lori A Passmore; T Martin Schmeing; David Maag; Drew J Applefield; Michael Acker; Mikkel A Algire; Jon R Lorsch; Venki Ramakrishnan
The eukaryotic translation initiation factors eIF1 and eIF1A induce an open conformation of the 40S ribosome.
Molecular cell 2007;26(1):41-50.
2006: Maria Selmer; Christine M. Dunham; Frank Murphy; Albert Weixlbaumer; Sabine Petry; Ann C Kelley; John R Weir; Venki Ramakrishnan
Structure of the 70S ribosome complexed with mRNA and tRNA.
Science (New York, N.Y.) 2006;313(5795):1935-42.
2005: Sabine Petry; Ditlev E Brodersen; Frank Murphy; Christine M. Dunham; Maria Selmer; Michael J Tarry; Ann C Kelley; Venki Ramakrishnan
Crystal structures of the ribosome in complex with release factors RF1 and RF2 bound to a cognate stop codon.
Cell 2005;123(7):1255-66.
2005: Tina Daviter; Frank Murphy; Venki Ramakrishnan
Molecular biology. A renewed focus on transfer RNA.
Science (New York, N.Y.) 2005;308(5725):1123-4.
2005: James M Ogle; Venki Ramakrishnan
Structural insights into translational fidelity.
Annual review of biochemistry 2005;74():129-77.
2004: Frank Murphy; Venki Ramakrishnan; Andrzej Malkiewicz; Paul F Agris
The role of modifications in codon discrimination by tRNA(Lys)UUU.
Nature structural & molecular biology 2004;11(12):1186-91.
2004: Frank Murphy; Venki Ramakrishnan
Structure of a purine-purine wobble base pair in the decoding center of the ribosome.
Nature structural & molecular biology 2004;11(12):1251-2.
2003: Ditlev E Brodersen; William M Clemons; Andrew P Carter; Brian T Wimberly; Venki Ramakrishnan
Phasing the 30S ribosomal subunit structure.
Acta crystallographica. Section D, Biological crystallography 2003;59(Pt 11):2044-50.
2003: James M Ogle; Andrew P Carter; Venki Ramakrishnan
Insights into the decoding mechanism from recent ribosome structures.
Trends in biochemical sciences 2003;28(5):259-66.
2003: Ditlev E Brodersen; Venki Ramakrishnan
Shape can be seductive.
Nature structural biology 2003;10(2):78-80.
2002: James M Ogle; Frank Murphy; Michael J Tarry; Venki Ramakrishnan
Selection of tRNA by the ribosome requires a transition from an open to a closed form.
Cell 2002;111(5):721-32.
2002: Venki Ramakrishnan
Ribosome structure and the mechanism of translation.
Cell 2002;108(4):557-72.
2002: Ditlev E Brodersen; William M Clemons; Andrew P Carter; Brian T Wimberly; Venki Ramakrishnan
Crystal structure of the 30 S ribosomal subunit from Thermus thermophilus: structure of the proteins and their interactions with 16 S RNA.
Journal of molecular biology 2002;316(3):725-68.
2001: William M Clemons; Ditlev E Brodersen; JP McCutcheon; J L May; Andrew P Carter; RJ Morgan-Warren; Brian T Wimberly; Venki Ramakrishnan
Crystal structure of the 30 S ribosomal subunit from Thermus thermophilus: purification, crystallization and structure determination.
Journal of molecular biology 2001;310(4):827-43.
2001: James M Ogle; Ditlev E Brodersen; William M Clemons; Michael J Tarry; Andrew P Carter; Venki Ramakrishnan
Recognition of cognate transfer RNA by the 30S ribosomal subunit.
Science (New York, N.Y.) 2001;292(5518):897-902.
2001: Venki Ramakrishnan; P B Moore
Atomic structures at last: the ribosome in 2000.
Current opinion in structural biology 2001;11(2):144-54.
2001: Andrew P Carter; William M Clemons; Ditlev E Brodersen; RJ Morgan-Warren; T Hartsch; Brian T Wimberly; Venki Ramakrishnan
Crystal structure of an initiation factor bound to the 30S ribosomal subunit.
Science (New York, N.Y.) 2001;291(5503):498-501.
2001: Ditlev E Brodersen; Andrew P Carter; William M Clemons; RJ Morgan-Warren; Frank Murphy; James M Ogle; Michael J Tarry; Brian T Wimberly; Venki Ramakrishnan
Atomic structures of the 30S subunit and its complexes with ligands and antibiotics.
Cold Spring Harbor symposia on quantitative biology 2001;66():17-32.
2000: Ditlev E Brodersen; William M Clemons; Andrew P Carter; RJ Morgan-Warren; Brian T Wimberly; Venki Ramakrishnan
The structural basis for the action of the antibiotics tetracycline, pactamycin, and hygromycin B on the 30S ribosomal subunit.
Cell 2000;103(7):1143-54.
2000: Andrew P Carter; William M Clemons; Ditlev E Brodersen; RJ Morgan-Warren; Brian T Wimberly; Venki Ramakrishnan
Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics.
Nature 2000;407(6802):340-8.
2000: Brian T Wimberly; Ditlev E Brodersen; William M Clemons; RJ Morgan-Warren; Andrew P Carter; Clemens Vonrhein; T Hartsch; Venki Ramakrishnan
Structure of the 30S ribosomal subunit.
Nature 2000;407(6802):327-39.
2000: Peter Allard; Alexey Rak; Brian T Wimberly; William M Clemons; A Kalinin; Magnus Helgstrand; Maria B Garber; Venki Ramakrishnan; Torleif Härd
Another piece of the ribosome: solution structure of S16 and its location in the 30S subunit.
Structure (London, England : 1993) 2000;8(8):875-82.
1999: Hill Melinda; RN Dutnall; Stefan Tafrov; Rolf Sternglanz; Venki Ramakrishnan
Crystal structure of the histone acetyltransferase Hpa2: A tetrameric member of the Gcn5-related N-acetyltransferase superfamily.
Journal of molecular biology 1999;294(5):1311-25.
1999: William M Clemons; K Gowda; SD Black; Christian Zwieb; Venki Ramakrishnan
Crystal structure of the conserved subdomain of human protein SRP54M at 2.1 A resolution: evidence for the mechanism of signal peptide binding.
Journal of molecular biology 1999;292(3):697-705.
1999: William M Clemons; J L May; Brian T Wimberly; JP McCutcheon; M S Capel; Venki Ramakrishnan
Structure of a bacterial 30S ribosomal subunit at 5.5 A resolution.
Nature 1999;400(6747):833-40.
1999: Brian T Wimberly; Rebecca Guymon; JP McCutcheon; SW White; Venki Ramakrishnan
A detailed view of a ribosomal active site: the structure of the L11-RNA complex.
Cell 1999;97(4):491-502.
1999: JP McCutcheon; Rajendra K Agrawal; S M Philips; Robert A Grassucci; S E Gerchman; William M Clemons; Venki Ramakrishnan; J Frank
Location of translational initiation factor IF3 on the small ribosomal subunit.
Proceedings of the National Academy of Sciences of the United States of America 1999;96(8):4301-6.
1998: RN Dutnall; Stefan Tafrov; Rolf Sternglanz; Venki Ramakrishnan
Structure of the histone acetyltransferase Hat1: a paradigm for the GCN5-related N-acetyltransferase superfamily.
Cell 1998;94(4):427-38.
1998: Venki Ramakrishnan; S W White
Ribosomal protein structures: insights into the architecture, machinery and evolution of the ribosome.
Trends in biochemical sciences 1998;23(6):208-12.
1998: William M Clemons; Christopher Davies; SW White; Venki Ramakrishnan
Conformational variability of the N-terminal helix in the structure of ribosomal protein S15.
Structure (London, England : 1993) 1998;6(4):429-38.
1998: RN Dutnall; Stefan Tafrov; Rolf Sternglanz; Venki Ramakrishnan
Structure of the yeast histone acetyltransferase Hat1: insights into substrate specificity and implications for the Gcn5-related N-acetyltransferase superfamily.
Cold Spring Harbor symposia on quantitative biology 1998;63():501-7.
1997: RN Dutnall; Venki Ramakrishnan
Twists and turns of the nucleosome: tails without ends.
Structure (London, England : 1993) 1997;5(10):1255-9.
1997: Brian T Wimberly; SW White; Venki Ramakrishnan
The structure of ribosomal protein S7 at 1.9 A resolution reveals a beta-hairpin motif that binds double-stranded nucleic acids.
Structure (London, England : 1993) 1997;5(9):1187-98.
1997: Venki Ramakrishnan
Histone structure and the organization of the nucleosome.
Annual review of biophysics and biomolecular structure 1997;26():83-112.
1995: Venki Ramakrishnan
The histone fold: evolutionary questions.
Proceedings of the National Academy of Sciences of the United States of America 1995;92(25):11328-30.