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Shoba Ranganathan

Research Profile

Occupations

Chemicals & Drugs

Concepts & Ideas

Genes & Molecular Sequences

Procedures

Activities & Behaviors

Phenomena

Protein Binding

Geographic Areas

Asia

Co-author Network

Publications

TOP 3
Gaurav Kumar; Edmond J Breen; Shoba Ranganathan
Identification of ovarian cancer associated genes using an integrated approach in a Boolean framework.
Neil D Young; Adhemar Zerlotini; Guojie Zhang; Paul J Brindley; Bronwyn E Campbell; Cinzia Cantacessi; Fangyuan Chen; Xiaodong Fang; Ross S Hall; Andreas Hofmann; Aaron R Jex; Yi Kang; Bo Li; Yingrui Li; Shiping Liu; Alex Loukas; Guilherme Oliveira; Shoba Ranganathan; Gabriel Rinaldi; David Rollinson; Jun Wang; Jian Wang; Xuan Wu; Zijun Xiong; Xun Xu; Huanming Yang; Linfeng Yang; Robin B Gasser
Whole-genome sequence of Schistosoma haematobium.
Ranjeeta Menon; Makedonka Mitreva; Robin B Gasser; Shoba Ranganathan
An analysis of the transcriptome of Teladorsagia circumcincta: its biological and biotechnological implications.

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All Publications

2013: Gaurav Kumar; Edmond J Breen; Shoba Ranganathan
Identification of ovarian cancer associated genes using an integrated approach in a Boolean framework.
BMC systems biology 2013;7():12.
2012: Neil D Young; Adhemar Zerlotini; Guojie Zhang; Paul J Brindley; Bronwyn E Campbell; Cinzia Cantacessi; Fangyuan Chen; Xiaodong Fang; Ross S Hall; Andreas Hofmann; Aaron R Jex; Yi Kang; Bo Li; Yingrui Li; Shiping Liu; Alex Loukas; Guilherme Oliveira; Shoba Ranganathan; Gabriel Rinaldi; David Rollinson; Jun Wang; Jian Wang; Xuan Wu; Zijun Xiong; Xun Xu; Huanming Yang; Linfeng Yang; Robin B Gasser
Whole-genome sequence of Schistosoma haematobium.
Nature genetics 2012;44(2):221-5.
2012: Ranjeeta Menon; Makedonka Mitreva; Robin B Gasser; Shoba Ranganathan
An analysis of the transcriptome of Teladorsagia circumcincta: its biological and biotechnological implications.
BMC genomics 2012;13 Suppl 7():S10.
2012: Shoba Ranganathan; Tin Wee Tan; Sissades Tongsima; Jonathan Chan; Christian Schönbach
Advances in translational bioinformatics and population genomics in the Asia-Pacific.
BMC genomics 2012;13 Suppl 7():S1.
2012: Ranjeeta Menon; Gagan Garg; Robin B Gasser; Shoba Ranganathan
TranSeqAnnotator: large-scale analysis of transcriptomic data.
BMC bioinformatics 2012;13 Suppl 17():S24.
2012: Christian Schönbach; Tin Wee Tan; Sissades Tongsima; Vladimir Brusic; Jonathan Chan; Shoba Ranganathan
InCoB2012 Conference: from biological data to knowledge to technological breakthroughs.
BMC bioinformatics 2012;13 Suppl 17():S1.
2012: Gagan Garg; Shoba Ranganathan
Helminth secretome database (HSD): a collection of helminth excretory/secretory proteins predicted from expressed sequence tags (ESTs).
BMC genomics 2012;13 Suppl 7():S8.
2012: Javed M Khan; Gaurav Kumar; Shoba Ranganathan
In silico prediction of immunogenic T cell epitopes for HLA-DQ8.
Immunome research 2012;8(1):14.
2012: Antonio Marcilla; Juan Martinez-Blanch; Carla Muñoz-Antolí; Javier Ortiz; Laia Pedrola; Shoba Ranganathan; Javier Sotillo; Rafael Toledo; María Trelis; Dolores Bernal; M Victoria Dominguez; Javier Forment; Gagan Garg; José-Guillermo Esteban
The transcriptome analysis of Strongyloides stercoralis L3i larvae reveals targets for intervention in a neglected disease.
PLoS neglected tropical diseases 2012;6(2):e1513.
2011: Varun Khanna; Shoba Ranganathan
In silico approach to screen compounds active against parasitic nematodes of major socio-economic importance.
BMC bioinformatics 2011;12 Suppl 13():S25.
2011: Shoba Ranganathan; Burkhard Rost; Christian Schönbach; Janet Kelso; Sheila Nathan; Tin Wee Tan
Towards big data science in the decade ahead from ten years of InCoB and the 1st ISCB-Asia Joint Conference.
BMC bioinformatics 2011;12 Suppl 13():S1.
2011: Gagan Garg; Shoba Ranganathan
In silico secretome analysis approach for next generation sequencing transcriptomic data.
BMC genomics 2011;12 Suppl 3():S14.
2011: Christian Schönbach; Tin Wee Tan; Janet Kelso; Sheila Nathan; Burkhard Rost; Shoba Ranganathan
InCoB celebrates its tenth anniversary as first joint conference with ISCB-Asia.
BMC genomics 2011;12 Suppl 3():S1.
2011: Thi Huynh; Javed Mohammed Khan; Shoba Ranganathan
A comparative structural bioinformatics analysis of inherited mutations in β-D-Mannosidase across multiple species reveals a genotype-phenotype correlation.
BMC genomics 2011;12 Suppl 3():S22.
2011: Aaron R Jex; Yi Kang; Bo Li; Yingrui Li; Shiping Liu; Peter Nejsum; Shoba Ranganathan; Erich M Schwarz; Paul W Sternberg; Johnny Vlaminck; Jun Wang; Jian Wang; Tao Wang; Xuan Wu; Zijun Xiong; Xun Xu; Huanming Yang; Linfeng Yang; Neil D Young; Na Zeng; Guojie Zhang; Garry A Anderson; Bronwyn E Campbell; Cinzia Cantacessi; Fangyuan Chen; Xiaodong Fang; Peter Geldhof; Ross S Hall; Todd W Harris; Robin B Gasser
Ascaris suum draft genome.
Nature 2011;479(7374):529-33.
2011: Cinzia Cantacessi; Robin Gasser; Christina Strube; Thomas Schnieder; Aaron R Jex; Ross S Hall; Bronwyn E Campbell; Neil D Young; Shoba Ranganathan; Paul W Sternberg; Makedonka Mitreva
Deep insights into Dictyocaulus viviparus transcriptomes provides unique prospects for new drug targets and disease intervention.
Biotechnology advances 2011;29(3):261-71.
2011: Javed Mohammed Khan; Harish Reddy Cheruku; Joo Chuan Tong; Shoba Ranganathan
MPID-T2: a database for sequence-structure-function analyses of pMHC and TR/pMHC structures.
Bioinformatics (Oxford, England) 2011;27(8):1192-3.
2011: Varun Khanna; Shoba Ranganathan
Structural diversity of biologically interesting datasets: a scaffold analysis approach.
Journal of cheminformatics 2011;3():30.
2011: Javed Mohammed Khan; Shoba Ranganathan
Understanding TR binding to pMHC complexes: how does a TR scan many pMHC complexes yet preferentially bind to one.
PloS one 2011;6(2):e17194.
2010: Cinzia Cantacessi; Makedonka Mitreva; Bronwyn E Campbell; Ross S Hall; Neil D Young; Aaron R Jex; Shoba Ranganathan; Robin Gasser
First transcriptomic analysis of the economically important parasitic nematode, Trichostrongylus colubriformis, using a next-generation sequencing approach.
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2010;10(8):1199-207.
2010: Cinzia Cantacessi; Aaron R Jex; Ross S Hall; Neil D Young; Bronwyn E Campbell; Anja Joachim; Matthew J Nolan; Sahar Abubucker; Paul W Sternberg; Shoba Ranganathan; Makedonka Mitreva; Robin Gasser
A practical, bioinformatic workflow system for large data sets generated by next-generation sequencing.
Nucleic acids research 2010;38(17):e171.
2010: Carsten Kettner; Dawn Field; Susanna-Assunta Sansone; Chris Taylor; Jan Aerts; Nigel Binns; Andrew Blake; Cedrik Michael Britten; Ario de Marco; Jennifer Fostel; Pascale Gaudet; Alejandra González-Beltrán; Nigel Hardy; Jan Hellemans; Henning Hermjakob; Nick Juty; Jim Leebens-Mack; Eamonn Maguire; Steffen Neumann; Sandra Orchard; Helen Parkinson; William Piel; Shoba Ranganathan; Philippe Rocca-Serra; Annapaola Santarsiero; David Shotton; Peter Sterk; Andreas Untergasser; Patricia L Whetzel
Meeting Report from the Second "Minimum Information for Biological and Biomedical Investigations" (MIBBI) workshop.
Standards in genomic sciences 2010;3(3):259-66.
2010: Tin Wee Tan; Joo Chuan Tong; Asif M Khan; Mark de Silva; Kuan Siong Lim; Shoba Ranganathan
Advancing standards for bioinformatics activities: persistence, reproducibility, disambiguation and Minimum Information About a Bioinformatics investigation (MIABi).
BMC genomics 2010;11 Suppl 4():S27.
2010: Shoba Ranganathan; Christian Schönbach; Kenta Nakai; Tin Wee Tan
Challenges of the next decade for the Asia Pacific region: 2010 International Conference in Bioinformatics (InCoB 2010).
BMC genomics 2010;11 Suppl 4():S1.
2010: Gaurav Kumar; Shoba Ranganathan
Network analysis of human protein location.
BMC bioinformatics 2010;11 Suppl 7():S9.
2010: Christian Schönbach; Kenta Nakai; Tin Wee Tan; Shoba Ranganathan
InCoB2010 - 9th International Conference on Bioinformatics at Tokyo, Japan, September 26-28, 2010.
BMC bioinformatics 2010;11 Suppl 7():S1.
2010: Javed Mohammed Khan; Shoba Ranganathan
pDOCK: a new technique for rapid and accurate docking of peptide ligands to Major Histocompatibility Complexes.
Immunome research 2010;6 Suppl 1():S2.
2010: Cinzia Cantacessi; Makedonka Mitreva; Aaron R Jex; Neil D Young; Bronwyn E Campbell; Ross S Hall; Maria A Doyle; Stuart A Ralph; Elida M Rabelo; Shoba Ranganathan; Paul W Sternberg; Alex Loukas; Robin Gasser
Massively parallel sequencing and analysis of the Necator americanus transcriptome.
PLoS neglected tropical diseases 2010;4(5):e684.
2009: Cinzia Cantacessi; F C Zou; R S Hall; W Zhong; Aaron R Jex; Bronwyn E Campbell; Shoba Ranganathan; P W Sternberg; Xing-Quan Zhu; Robin Gasser
Bioinformatic analysis of abundant, gender-enriched transcripts of adult Ascaris suum (Nematoda) using a semi-automated workflow platform.
Molecular and cellular probes 2009;23(5):205-17.
2009: Mark W Robinson; Ranjeeta Menon; Sheila M Donnelly; John P Dalton; Shoba Ranganathan
An integrated transcriptomics and proteomics analysis of the secretome of the helminth pathogen Fasciola hepatica: proteins associated with invasion and infection of the mammalian host.
Molecular & cellular proteomics : MCP 2009;8(8):1891-907.
2009: Shoba Ranganathan; Ranjeeta Menon; Robin Gasser
Advanced in silico analysis of expressed sequence tag (EST) data for parasitic nematodes of major socio-economic importance--fundamental insights toward biotechnological outcomes.
Biotechnology advances 2009;27(4):439-48.
2009: Elida M Rabelo; Ross S Hall; Alex Loukas; Leanne Cooper; Min Hu; Shoba Ranganathan; Robin Gasser
Improved insights into the transcriptomes of the human hookworm Necator americanus--fundamental and biotechnological implications.
Biotechnology advances 2009;27(2):122-32.
2009: Khar Heng Choo; Tin Wee Tan; Shoba Ranganathan
A comprehensive assessment of N-terminal signal peptides prediction methods.
BMC bioinformatics 2009;10 Suppl 15():S2.
2009: Varun Khanna; Shoba Ranganathan
Physiochemical property space distribution among human metabolites, drugs and toxins.
BMC bioinformatics 2009;10 Suppl 15():S10.
2009: Shoba Ranganathan
Towards a career in bioinformatics.
BMC bioinformatics 2009;10 Suppl 15():S1.
2009: Lawrence J K Wee; Joo Chuan Tong; Tin Wee Tan; Shoba Ranganathan
A multi-factor model for caspase degradome prediction.
BMC genomics 2009;10 Suppl 3():S6.
2009: Tin Wee Tan; Shen Jean Lim; Asif M Khan; Shoba Ranganathan
A proposed minimum skill set for university graduates to meet the informatics needs and challenges of the "-omics" era.
BMC genomics 2009;10 Suppl 3():S36.
2009: Javed Mohammed Khan; Shoba Ranganathan
A multi-species comparative structural bioinformatics analysis of inherited mutations in alpha-D-mannosidase reveals strong genotype-phenotype correlation.
BMC genomics 2009;10 Suppl 3():S33.
2009: Elsa Chacko; Shoba Ranganathan
Genome-wide analysis of alternative splicing in cow: implications in bovine as a model for human diseases.
BMC genomics 2009;10 Suppl 3():S11.
2009: Shoba Ranganathan; Frank Eisenhaber; Joo Chuan Tong; Tin Wee Tan
Extending Asia Pacific bioinformatics into new realms in the "-omics" era.
BMC genomics 2009;10 Suppl 3():S1.
2009: Shoba Ranganathan; Gagan Garg
Secretome: clues into pathogen infection and clinical applications.
Genome medicine 2009;1(11):113.
2009: Elsa Chacko; Shoba Ranganathan
Comprehensive splicing graph analysis of alternative splicing patterns in chicken, compared to human and mouse.
BMC genomics 2009;10 Suppl 1():S5.
2008: Vladimir Brusic; Shoba Ranganathan
Critical technologies for bioinformatics.
Briefings in bioinformatics 2008;9(4):261-2.
2008: Rebecca J Ormsby; Shoba Ranganathan; Joo Chuan Tong; Kim M Griggs; David P Dimasi; Alex W Hewitt; Kathryn P Burdon; Jamie E Craig; Josephine Hoh; David L Gordon
Functional and structural implications of the complement factor H Y402H polymorphism associated with age-related macular degeneration.
Investigative ophthalmology & visual science 2008;49(5):1763-70.
2008: Jitendra Gaikwad; Varun Khanna; Subramanyam Vemulpad; Joanne Jamie; Jim Kohen; Shoba Ranganathan
CMKb: a web-based prototype for integrating Australian Aboriginal customary medicinal plant knowledge.
BMC bioinformatics 2008;9 Suppl 12():S25.
2008: Khar Heng Choo; Shoba Ranganathan
Flanking signal and mature peptide residues influence signal peptide cleavage.
BMC bioinformatics 2008;9 Suppl 12():S15.
2008: Shoba Ranganathan; Wen-Lian Hsu; Ueng-Cheng Yang; Tin Wee Tan
Emerging strengths in Asia Pacific bioinformatics.
BMC bioinformatics 2008;9 Suppl 12():S1.
2008: Shivashankar H Nagaraj; Robin Gasser; Shoba Ranganathan
Needles in the EST haystack: large-scale identification and analysis of excretory-secretory (ES) proteins in parasitic nematodes using expressed sequence tags (ESTs).
PLoS neglected tropical diseases 2008;2(9):e301.
2008: Lesheng Kong; Shoba Ranganathan
Tandem duplication, circular permutation, molecular adaptation: how Solanaceae resist pests via inhibitors.
BMC bioinformatics 2008;9 Suppl 1():S22.
2008: Khar Heng Choo; Joo Chuan Tong; Shoba Ranganathan
Modeling Escherichia coli signal peptidase complex with bound substrate: determinants in the mature peptide influencing signal peptide cleavage.
BMC bioinformatics 2008;9 Suppl 1():S15.
2008: Shivashankar H Nagaraj; Robin Gasser; Alasdair J Nisbet; Shoba Ranganathan
In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda): comparison of the automated ESTExplorer workflow platform with conventional database searches.
BMC bioinformatics 2008;9 Suppl 1():S10.
2008: Shoba Ranganathan; Michael Gribskov; Tin Wee Tan
Bioinformatics research in the Asia Pacific: a 2007 update.
BMC bioinformatics 2008;9 Suppl 1():S1.
2008: Bennett J D Datu; Robin Gasser; Shivashankar H Nagaraj; Eng K Ong; Peter O'Donoghue; Russell Leigh McInnes; Shoba Ranganathan; Alex Loukas
Transcriptional changes in the hookworm, Ancylostoma caninum, during the transition from a free-living to a parasitic larva.
PLoS neglected tropical diseases 2008;2(1):e130.
2008: Bronwyn E Campbell; Shivashankar H Nagaraj; Min Hu; Weiwei Zhong; Paul W Sternberg; Eng K Ong; Alex Loukas; Shoba Ranganathan; Ian Beveridge; Russell Leigh McInnes; Gareth W Hutchinson; Robin Gasser
Gender-enriched transcripts in Haemonchus contortus--predicted functions and genetic interactions based on comparative analyses with Caenorhabditis elegans.
International journal for parasitology 2008;38(1):65-83.
2007: Rajaraman Kanagasabai; Khar Heng Choo; Shoba Ranganathan; Christopher J O Baker
A workflow for mutation extraction and structure annotation.
Journal of bioinformatics and computational biology 2007;5(6):1319-37.
2007: Lawrence J K Wee; Tin Wee Tan; Shoba Ranganathan
CASVM: web server for SVM-based prediction of caspase substrates cleavage sites.
Bioinformatics (Oxford, England) 2007;23(23):3241-3.
2007: Min Hu; Bronwyn E Campbell; Mark Pellegrino; Alex Loukas; Ian Beveridge; Shoba Ranganathan; Robin Gasser
Genomic characterization of Tv-ant-1, a Caenorhabditis elegans tag-61 homologue from the parasitic nematode Trichostrongylus vitrinus.
Gene 2007;397(1-2):12-25.
2007: Shivashankar H Nagaraj; Nandan Deshpande; Robin Gasser; Shoba Ranganathan
ESTExplorer: an expressed sequence tag (EST) assembly and annotation platform.
Nucleic acids research 2007;35(Web Server issue):W143-7.
2007: Robin Gasser; Pauline Cottee; Alasdair J Nisbet; Bärbel Ruttkowski; Shoba Ranganathan; Anja Joachim
Oesophagostomum dentatum: potential as a model for genomic studies of strongylid nematodes, with biotechnological prospects.
Biotechnology advances 2007;25(3):281-93.
2007: Joo Chuan Tong; Tin Wee Tan; Shoba Ranganathan
Methods and protocols for prediction of immunogenic epitopes.
Briefings in bioinformatics 2007;8(2):96-108.
2007: Joo Chuan Tong; Tin Wee Tan; Shoba Ranganathan
In silico grouping of peptide/HLA class I complexes using structural interaction characteristics.
Bioinformatics (Oxford, England) 2007;23(2):177-83.
2007: Shoba Ranganathan; Joo Chuan Tong
A practical guide to structure-based prediction of MHC-binding peptides.
Methods in molecular biology (Clifton, N.J.) 2007;409():301-8.
2007: Shoba Ranganathan; Shivashankar H Nagaraj; Min Hu; Christina Strube; Thomas Schnieder; Robin Gasser
A transcriptomic analysis of the adult stage of the bovine lungworm, Dictyocaulus viviparus.
BMC genomics 2007;8():311.
2007: Joo Chuan Tong; Zong Hong Zhang; Thomas J August; Vladimir Brusic; Tin Wee Tan; Shoba Ranganathan
In silico characterization of immunogenic epitopes presented by HLA-Cw*0401.
Immunome research 2007;3():7.
2007: Shivashankar H Nagaraj; Robin Gasser; Shoba Ranganathan
A hitchhiker's guide to expressed sequence tag (EST) analysis.
Briefings in bioinformatics 2007;8(1):6-21.
2006: Durgaprasad Bollina; Bernett T K Lee; Tin Wee Tan; Shoba Ranganathan
ASGS: an alternative splicing graph web service.
Nucleic acids research 2006;34(Web Server issue):W444-7.
2006: Paul Thiam Joo Tan; Shoba Ranganathan; Vladimir Brusic
Deduction of functional peptide motifs in scorpion toxins.
Journal of peptide science : an official publication of the European Peptide Society 2006;12(6):420-7.
2006: Joo Chuan Tong; Guang Lan Zhang; Tin Wee Tan; Thomas J August; Vladimir Brusic; Shoba Ranganathan
Prediction of HLA-DQ3.2beta ligands: evidence of multiple registers in class II binding peptides.
Bioinformatics (Oxford, England) 2006;22(10):1232-8.
2006: Paul Thiam Joo Tan; Anitha Veeramani; Kellathur N Srinivasan; Shoba Ranganathan; Vladimir Brusic
SCORPION2: a database for structure-function analysis of scorpion toxins.
Toxicon : official journal of the International Society on Toxinology 2006;47(3):356-63.
2006: Joo Chuan Tong; Tin Wee Tan; Animesh Sinha; Shoba Ranganathan
Prediction of desmoglein-3 peptides reveals multiple shared T-cell epitopes in HLA DR4- and DR6-associated pemphigus vulgaris.
BMC bioinformatics 2006;7 Suppl 5():S7.
2006: Lawrence J K Wee; Tin Wee Tan; Shoba Ranganathan
SVM-based prediction of caspase substrate cleavage sites.
BMC bioinformatics 2006;7 Suppl 5():S14.
2006: Joo Chuan Tong; Lesheng Kong; Tin Wee Tan; Shoba Ranganathan
MPID-T: database for sequence-structure-function information on T-cell receptor/peptide/MHC interactions.
Applied bioinformatics 2006;5(2):111-4.
2006: Joo Chuan Tong; Jeff Bramson; Darja Kanduc; Selwyn Chow; Animesh Sinha; Shoba Ranganathan
Modeling the bound conformation of Pemphigus vulgaris-associated peptides to MHC Class II DR and DQ alleles.
Immunome research 2006;2():1.
2006: Johann Lenffer; Frank W Nicholas; Kao Castle; Arjun Rao; Stefan Gregory; Michael Poidinger; Matthew D Mailman; Shoba Ranganathan
OMIA (Online Mendelian Inheritance in Animals): an enhanced platform and integration into the Entrez search interface at NCBI.
Nucleic acids research 2006;34(Database issue):D599-601.
2005: Shoba Ranganathan
Bioinformatics education--perspectives and challenges.
PLoS computational biology 2005;1(6):e52.
2005: Paul Thiam Joo Tan; Kellathur N Srinivasan; Seng Hong Seah; Judice L Y Koh; Tin Wee Tan; Shoba Ranganathan; Vladimir Brusic
Accurate prediction of scorpion toxin functional properties from primary structures.
Journal of molecular graphics & modelling 2005;24(1):17-24.
2005: Han-Chong Ng; Shoba Ranganathan; Kim Lee Chua; Hoon Eng Khoo
Cloning and molecular characterization of the first aquatic hyaluronidase, SFHYA1, from the venom of stonefish (Synanceja horrida).
Gene 2005;346():71-81.
2005: Khar Heng Choo; Tin Wee Tan; Shoba Ranganathan
SPdb--a signal peptide database.
BMC bioinformatics 2005;6():249.
2004: Emilia Tng; Suet-Mien Tan; Shoba Ranganathan; Ming Cheng; S K Alex Law
The integrin alpha L beta 2 hybrid domain serves as a link for the propagation of activation signal from its stalk regions to the I-like domain.
The Journal of biological chemistry 2004;279(52):54334-9.
2004: Bernett T K Lee; Tin Wee Tan; Shoba Ranganathan
DEDB: a database of Drosophila melanogaster exons in splicing graph form.
BMC bioinformatics 2004;5():189.
2004: Joo Chuan Tong; Tin Wee Tan; Shoba Ranganathan
Modeling the structure of bound peptide ligands to major histocompatibility complex.
Protein science : a publication of the Protein Society 2004;13(9):2523-32.
2004: Lesheng Kong; Bernett T K Lee; Joo Chuan Tong; Tin Wee Tan; Shoba Ranganathan
SDPMOD: an automated comparative modeling server for small disulfide-bonded proteins.
Nucleic acids research 2004;32(Web Server issue):W356-9.
2004: Lesheng Kong; Shoba Ranganathan
Delineation of modular proteins: domain boundary prediction from sequence information.
Briefings in bioinformatics 2004;5(2):179-92.
2004: Vivek Gopalan; Tin Wee Tan; Bernett T K Lee; Shoba Ranganathan
Xpro: database of eukaryotic protein-encoding genes.
Nucleic acids research 2004;32(Database issue):D59-63.
2003: Bernett T K Lee; Tin Wee Tan; Shoba Ranganathan
MGAlignIt: A web service for the alignment of mRNA/EST and genomic sequences.
Nucleic acids research 2003;31(13):3533-6.
2003: Eleni Giannakis; T. Sakari Jokiranta; Dean A Male; Shoba Ranganathan; Rebecca J Ormsby; Vincent Fischetti; Carolyn Mold; David L Gordon
A common site within factor H SCR 7 responsible for binding heparin, C-reactive protein and streptococcal M protein.
European journal of immunology 2003;33(4):962-9.
2003: Kunde Ramamoorthy Govindarajan; Pandjassarame Kangueane; Tin Wee Tan; Shoba Ranganathan
MPID: MHC-Peptide Interaction Database for sequence-structure-function information on peptides binding to MHC molecules.
Bioinformatics (Oxford, England) 2003;19(2):309-10.
2003: Vivek Gopalan; Tin Wee Tan; Shoba Ranganathan
XdomView: protein domain and exon position visualization.
Bioinformatics (Oxford, England) 2003;19(1):159-60.
2002: Kellathur N Srinivasan; Vaithiyalingam Sivaraja; Isabelle Huys; Toru Sasaki; Betty Cheng; Thallampuranam Krishnaswamy S Kumar; Kazuki Sato; Jan Tytgat; Chin Yu; B Chia Cheng San; Shoba Ranganathan; H John Bowie; R Manjunatha Kini; Ponnampalam Gopalakrishnakone
kappa-Hefutoxin1, a novel toxin from the scorpion Heterometrus fulvipes with unique structure and function. Importance of the functional diad in potassium channel selectivity.
The Journal of biological chemistry 2002;277(33):30040-7.
2002: Shoba Ranganathan; Sunita Singh; Chit Laa Poh; Vincent T K Chow
The hand, foot and mouth disease virus capsid: sequence analysis and prediction of antigenic sites from homology modelling.
Applied bioinformatics 2002;1(1):43-52.
2002: Shoba Ranganathan; Subramanian Subbiah; Tin Wee Tan
APBioNet: the Asia-Pacific regional consortium for bioinformatics.
Applied bioinformatics 2002;1(2):101-5.
2001: Eleni Giannakis; Dean A Male; Rebecca J Ormsby; C Mold; T. Sakari Jokiranta; Shoba Ranganathan; David L Gordon
Multiple ligand binding sites on domain seven of human complement factor H.
International immunopharmacology 2001;1(3):433-43.
2000: K J Simpson; Shoba Ranganathan; J A Fisher; P A Janssens; Denis C Shaw; Kevin R Nicholas
The gene for a novel member of the whey acidic protein family encodes three four-disulfide core domains and is asynchronously expressed during lactation.
The Journal of biological chemistry 2000;275(30):23074-81.
2000: Shoba Ranganathan; Dean A Male; Rebecca J Ormsby; Eleni Giannakis; David L Gordon
Pinpointing the putative heparin/sialic acid-binding residues in the 'sushi' domain 7 of factor H: a molecular modeling study.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2000;():155-67.
2000: Dean A Male; Rebecca J Ormsby; Shoba Ranganathan; Eleni Giannakis; David L Gordon
Complement factor H: sequence analysis of 221 kb of human genomic DNA containing the entire fH, fHR-1 and fHR-3 genes.
Molecular immunology 2000;37(1-2):41-52.
1999: Shoba Ranganathan; K J Simpson; Denis C Shaw; Kevin R Nicholas
The whey acidic protein family: a new signature motif and three-dimensional structure by comparative modeling.
Journal of molecular graphics & modelling 1999;17(2):106-13, 134-6.