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Upinder Bhalla

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TOP 3
Kalyanasundaram Parthasarathy; Upinder S Bhalla
Laterality and symmetry in rat olfactory behavior and in physiology of olfactory input.
Dhanya Parameshwaran; Upinder S Bhalla
Theta frequency background tunes transmission but not summation of spiking responses.
Dhanya Parameshwaran; Upinder S Bhalla
Summation in the Hippocampal CA3-CA1 Network Remains Robustly Linear Following Inhibitory Modulation and Plasticity, but Undergoes Scaling and Offset Transformations.

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All Publications

2013: Kalyanasundaram Parthasarathy; Upinder S Bhalla
Laterality and symmetry in rat olfactory behavior and in physiology of olfactory input.
The Journal of neuroscience : the official journal of the Society for Neuroscience 2013;33(13):5750-60.
2013: Dhanya Parameshwaran; Upinder S Bhalla
Theta frequency background tunes transmission but not summation of spiking responses.
PloS one 2013;8(1):e55607.
2012: Dhanya Parameshwaran; Upinder S Bhalla
Summation in the Hippocampal CA3-CA1 Network Remains Robustly Linear Following Inhibitory Modulation and Plasticity, but Undergoes Scaling and Offset Transformations.
Frontiers in computational neuroscience 2012;6():71.
2012: Adil Ghani Khan; Manaswini Sarangi; Upinder S Bhalla
Rats track odour trails accurately using a multi-layered strategy with near-optimal sampling.
Nature communications 2012;3():703.
2011: Upinder S Bhalla
Multiscale interactions between chemical and electric signaling in LTP induction, LTP reversal and dendritic excitability.
Neural networks : the official journal of the International Neural Network Society 2011;24(9):943-9.
2011: Dagmar Waltemath; Richard Adams; Daniel A Beard; Frank T Bergmann; Upinder S Bhalla; Randall Britten; Vijayalakshmi Chelliah; Michael T Cooling; Jonathan Cooper; Edmund J Crampin; Alan Garny; Stefan Hoops; Michael Hucka; Peter Hunter; Edda Klipp; Camille Laibe; Andrew K Miller; Ion Moraru; David Nickerson; Poul Fønss Nielsen; Macha Nikolski; Sven Sahle; Herbert M Sauro; Henning Schmidt; Jacky L Snoep; Dominic Tolle; Olaf Wolkenhauer; Nicolas Le Novère
Minimum Information About a Simulation Experiment (MIASE).
PLoS computational biology 2011;7(4):e1001122.
2010: Ashesh K Dhawale; Akari Hagiwara; Upinder S Bhalla; Venkatesh N Murthy; Dinu F Albeanu
Non-redundant odor coding by sister mitral cells revealed by light addressable glomeruli in the mouse.
Nature neuroscience 2010;13(11):1404-12.
2010: Padraig Gleeson; Sharon Crook; Robert C Cannon; Michael L Hines; Guy O Billings; Matteo Farinella; Thomas M Morse; Andrew P Davison; Subhasis Ray; Upinder S Bhalla; Simon R Barnes; Yoana D Dimitrova; R Angus Silver
NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail.
PLoS computational biology 2010;6(6):e1000815.
2010: Mikael Djurfeldt; Johannes Hjorth; Jochen M Eppler; Niraj Dudani; Moritz Helias; Tobias C Potjans; Upinder S Bhalla; Markus Diesmann; Jeanette Hellgren Kotaleski; Orjan Ekeberg
Run-time interoperability between neuronal network simulators based on the MUSIC framework.
Neuroinformatics 2010;8(1):43-60.
2009: Pragati Jain; Upinder S Bhalla
Signaling logic of activity-triggered dendritic protein synthesis: an mTOR gate but not a feedback switch.
PLoS computational biology 2009;5(2):e1000287.
2008: Upinder S Bhalla
How to record a million synaptic weights in a hippocampal slice.
PLoS computational biology 2008;4(6):e1000098.
2008: Adil G Khan; Mukund Thattai; Upinder S Bhalla
Odor representations in the rat olfactory bulb change smoothly with morphing stimuli.
Neuron 2008;57(4):571-85.
2008: Ashesh Dhawale; Upinder S Bhalla
The network and the synapse: 100 years after Cajal.
HFSP journal 2008;2(1):12-6.
2008: Subhasis Ray; Upinder S Bhalla
PyMOOSE: Interoperable Scripting in Python for MOOSE.
Frontiers in neuroinformatics 2008;2():6.
2008: Naren Ramakrishnan; Upinder S Bhalla
Memory switches in chemical reaction space.
PLoS computational biology 2008;4(7):e1000122.
2007: Sriram M Ajay; Upinder S Bhalla
A propagating ERKII switch forms zones of elevated dendritic activation correlated with plasticity.
HFSP journal 2007;1(1):49-66.
2007: Robert C Cannon; Marc-Oliver Gewaltig; Padraig Gleeson; Upinder S Bhalla; Hugo Cornelis; Michael L Hines; Fredrick W Howell; Eilif Muller; Joel R Stiles; Stefan Wils; Erik De Schutter
Interoperability of neuroscience modeling software: current status and future directions.
Neuroinformatics 2007;5(2):127-38.
2006: Sriram M Ajay; Upinder S Bhalla
Synaptic plasticity in vitro and in silico: insights into an intracellular signaling maze.
Physiology (Bethesda, Md.) 2006;21():289-96.
2006: Raghav Rajan; James P Clement; Upinder S Bhalla
Rats smell in stereo.
Science (New York, N.Y.) 2006;311(5761):666-70.
2005: Nicolas Le Novère; Andrew Finney; Michael Hucka; Upinder S Bhalla; Fabien Campagne; Julio Collado-Vides; Edmund J Crampin; Matt Halstead; Edda Klipp; Pedro Mendes; Poul Fønss Nielsen; Herbert M Sauro; Bruce Shapiro; Jacky L Snoep; Hugh D Spence; Barry L Wanner
Minimum information requested in the annotation of biochemical models (MIRIAM).
Nature biotechnology 2005;23(12):1509-15.
2005: Priyamvada Rajasethupathy; Sharat Vayttaden; Upinder S Bhalla
Systems modeling: a pathway to drug discovery.
Current opinion in chemical biology 2005;9(4):400-6.
2005: Arnold Hayer; Upinder S Bhalla
Molecular switches at the synapse emerge from receptor and kinase traffic.
PLoS computational biology 2005;1(2):137-54.
2005: G V HarshaRani; Sharat Vayttaden; Upinder S Bhalla
Electronic data sources for kinetic models of cell signaling.
Journal of biochemistry 2005;137(6):653-7.
2004: Sriram M Ajay; Upinder S Bhalla
A role for ERKII in synaptic pattern selectivity on the time-scale of minutes.
The European journal of neuroscience 2004;20(10):2671-80.
2004: Sharat Vayttaden; Sriram M Ajay; Upinder S Bhalla
A spectrum of models of signaling pathways.
Chembiochem : a European journal of chemical biology 2004;5(10):1365-74.
2004: Upinder S Bhalla
Signaling in small subcellular volumes. II. Stochastic and diffusion effects on synaptic network properties.
Biophysical journal 2004;87(2):745-53.
2004: Upinder S Bhalla
Signaling in small subcellular volumes. I. Stochastic and diffusion effects on individual pathways.
Biophysical journal 2004;87(2):733-44.
2004: Upinder S Bhalla
Models of cell signaling pathways.
Current opinion in genetics & development 2004;14(4):375-81.
2004: Sharat Vayttaden; Upinder S Bhalla
Developing complex signaling models using GENESIS/Kinetikit.
Science's STKE : signal transduction knowledge environment 2004;2004(219):pl4.
2004: Karan Vasudeva; Upinder S Bhalla
Adaptive stochastic-deterministic chemical kinetic simulations.
Bioinformatics (Oxford, England) 2004;20(1):78-84.
2003: Upinder S Bhalla
Temporal computation by synaptic signaling pathways.
Journal of chemical neuroanatomy 2003;26(2):81-6.
2003: Sachin S Deshmukh; Upinder S Bhalla
Representation of odor habituation and timing in the hippocampus.
The Journal of neuroscience : the official journal of the Society for Neuroscience 2003;23(5):1903-15.
2003: Sudhir Sivakumaran; Sridhar Hariharaputran; Jyoti Mishra; Upinder S Bhalla
The Database of Quantitative Cellular Signaling: management and analysis of chemical kinetic models of signaling networks.
Bioinformatics (Oxford, England) 2003;19(3):408-15.
2003: Upinder S Bhalla
Understanding complex signaling networks through models and metaphors.
Progress in biophysics and molecular biology 2003;81(1):45-65.
2002: Jyoti Mishra; Upinder S Bhalla
Simulations of inositol phosphate metabolism and its interaction with InsP(3)-mediated calcium release.
Biophysical journal 2002;83(3):1298-316.
2002: Upinder S Bhalla; Prahlad T Ram; Ravi Iyengar
MAP kinase phosphatase as a locus of flexibility in a mitogen-activated protein kinase signaling network.
Science (New York, N.Y.) 2002;297(5583):1018-23.
2002: Upinder S Bhalla
Mechanisms for temporal tuning and filtering by postsynaptic signaling pathways.
Biophysical journal 2002;83(2):740-52.
2002: Upinder S Bhalla
Biochemical signaling networks decode temporal patterns of synaptic input.
Journal of computational neuroscience 2002;13(1):49-62.
2002: Upinder S Bhalla
The chemical organization of signaling interactions.
Bioinformatics (Oxford, England) 2002;18(6):855-63.
2002: Upinder S Bhalla
Use of Kinetikit and GENESIS for modeling signaling pathways.
Methods in enzymology 2002;345():3-23.
2001: Upinder S Bhalla; Ravi Iyengar
Functional modules in biological signalling networks.
Novartis Foundation symposium 2001;239():4-13; discussion 13-5, 45-51.
1999: Gehzi Weng; Upinder S Bhalla; Ravi Iyengar
Complexity in biological signaling systems.
Science (New York, N.Y.) 1999;284(5411):92-6.
1999: Upinder S Bhalla; Ravi Iyengar
Emergent properties of networks of biological signaling pathways.
Science (New York, N.Y.) 1999;283(5400):381-7.